Gcaud1951.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1951.t1
Unique Name	Gcaud1951.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	263

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_821_length_17530_cov_5.307414	contig	NODE_821_length_17530_cov_5.307414:7761..8549 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706000.1
Max annot lvl	2759\|Eukaryota
Evalue	2.62e-61
EggNOG OGs	2C0HR@1\|root,2SC52@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1951	Gcaud1951	Gracilaria caudata M_176_S67 male	gene	NODE_821_length_17530_cov_5.307414 7761..8549 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1951.t1.stop1	Gcaud1951.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_821_length_17530_cov_5.307414 7761..7763 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1951.t1.CDS1	Gcaud1951.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_821_length_17530_cov_5.307414 7761..8549 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1951.t1.exon1	Gcaud1951.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_821_length_17530_cov_5.307414 7761..8549 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1951.t1.start1	Gcaud1951.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_821_length_17530_cov_5.307414 8547..8549 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1951.t1	Gcaud1951.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_821_length_17530_cov_5.307414 7761..8549 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_821_length_17530_cov_5.307414:7761..8549-
coding sequence from alignment at NODE_821_length_17530_cov_5.307414:7761..8549-

mRNA sequence

>Gcaud1951.t1 ID=Gcaud1951.t1|Name=Gcaud1951.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=263bp
MVAPIVPIGVMLGKADSAFKMVGGSSIIFNAIRSRIFGKVLRAIEYPDGE
LNSIKIYRMNLYRLKANIADTQPPPFPTAFVEPYDIKQISVFTSPHFTEP
VRTDADVSALPENAWLFWSKDTFEEAPIPTRGVKLDGSHIKKVIKPKEEP
SKSELMLQDEAISLAKKIRKTQQFSRWQYDRIVDLAIDRDPGLLAVTRNF
SSNDNEFQVHCTRLLRRRDPRSILMGDGLTPEEDLREVSDEDSAEDGPKR
NLEAQVELTSRE*

spliced messenger RNA

>Gcaud1951.t1 ID=Gcaud1951.t1|Name=Gcaud1951.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=789bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:7761..8549- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCGCCAATTGTTCCTATTGGCGTAATGCTCGGGAAGGCCGACAG
TGCCTTCAAGATGGTAGGAGGCTCATCTATCATCTTTAATGCCATCAGGT
CACGAATTTTTGGCAAGGTCCTTCGAGCAATCGAATATCCAGACGGCGAG
CTTAATAGCATCAAGATTTATCGCATGAACCTATATCGACTAAAGGCTAA
CATCGCAGATACTCAACCACCTCCGTTTCCAACTGCATTTGTAGAACCGT
ATGATATTAAGCAAATATCTGTGTTCACTTCGCCTCACTTTACTGAACCA
GTCAGAACTGATGCCGATGTTTCTGCGTTGCCTGAGAACGCGTGGCTTTT
CTGGAGTAAGGATACTTTTGAAGAAGCTCCAATTCCGACACGGGGCGTAA
AGCTTGACGGCTCTCATATCAAGAAAGTGATAAAACCAAAAGAGGAACCT
TCAAAGAGCGAATTAATGTTACAAGATGAAGCCATATCTTTGGCTAAGAA
GATCAGGAAAACGCAGCAGTTCTCCCGATGGCAGTACGATCGAATTGTTG
ACCTTGCTATTGATCGTGATCCTGGTTTATTGGCGGTGACGCGAAACTTT
TCCTCTAATGACAACGAGTTTCAAGTTCATTGCACGCGATTGCTGAGGCG
ACGAGATCCGCGGAGTATCCTGATGGGAGATGGCTTGACACCAGAAGAAG
ACCTTAGAGAGGTTTCAGACGAAGACAGTGCCGAAGATGGTCCGAAACGG
AACCTCGAAGCTCAAGTGGAACTAACGTCTCGAGAATGA

protein sequence of Gcaud1951.t1

>Gcaud1951.t1 ID=Gcaud1951.t1|Name=Gcaud1951.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=263bp
MVAPIVPIGVMLGKADSAFKMVGGSSIIFNAIRSRIFGKVLRAIEYPDGE
LNSIKIYRMNLYRLKANIADTQPPPFPTAFVEPYDIKQISVFTSPHFTEP
VRTDADVSALPENAWLFWSKDTFEEAPIPTRGVKLDGSHIKKVIKPKEEP
SKSELMLQDEAISLAKKIRKTQQFSRWQYDRIVDLAIDRDPGLLAVTRNF
SSNDNEFQVHCTRLLRRRDPRSILMGDGLTPEEDLREVSDEDSAEDGPKR
NLEAQVELTSRE*

mRNA from alignment at NODE_821_length_17530_cov_5.307414:7761..8549-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1951.t1 ID=Gcaud1951.t1|Name=Gcaud1951.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=789bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:7761..8549- (Gracilaria caudata M_176_S67 male)
ATGGTGGCGCCAATTGTTCCTATTGGCGTAATGCTCGGGAAGGCCGACAG
TGCCTTCAAGATGGTAGGAGGCTCATCTATCATCTTTAATGCCATCAGGT
CACGAATTTTTGGCAAGGTCCTTCGAGCAATCGAATATCCAGACGGCGAG
CTTAATAGCATCAAGATTTATCGCATGAACCTATATCGACTAAAGGCTAA
CATCGCAGATACTCAACCACCTCCGTTTCCAACTGCATTTGTAGAACCGT
ATGATATTAAGCAAATATCTGTGTTCACTTCGCCTCACTTTACTGAACCA
GTCAGAACTGATGCCGATGTTTCTGCGTTGCCTGAGAACGCGTGGCTTTT
CTGGAGTAAGGATACTTTTGAAGAAGCTCCAATTCCGACACGGGGCGTAA
AGCTTGACGGCTCTCATATCAAGAAAGTGATAAAACCAAAAGAGGAACCT
TCAAAGAGCGAATTAATGTTACAAGATGAAGCCATATCTTTGGCTAAGAA
GATCAGGAAAACGCAGCAGTTCTCCCGATGGCAGTACGATCGAATTGTTG
ACCTTGCTATTGATCGTGATCCTGGTTTATTGGCGGTGACGCGAAACTTT
TCCTCTAATGACAACGAGTTTCAAGTTCATTGCACGCGATTGCTGAGGCG
ACGAGATCCGCGGAGTATCCTGATGGGAGATGGCTTGACACCAGAAGAAG
ACCTTAGAGAGGTTTCAGACGAAGACAGTGCCGAAGATGGTCCGAAACGG
AACCTCGAAGCTCAAGTGGAACTAACGTCTCGAGAATGA

Coding sequence (CDS) from alignment at NODE_821_length_17530_cov_5.307414:7761..8549-

>Gcaud1951.t1 ID=Gcaud1951.t1|Name=Gcaud1951.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=789bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:7761..8549- (Gracilaria caudata M_176_S67 male)
ATGGTGGCGCCAATTGTTCCTATTGGCGTAATGCTCGGGAAGGCCGACAG
TGCCTTCAAGATGGTAGGAGGCTCATCTATCATCTTTAATGCCATCAGGT
CACGAATTTTTGGCAAGGTCCTTCGAGCAATCGAATATCCAGACGGCGAG
CTTAATAGCATCAAGATTTATCGCATGAACCTATATCGACTAAAGGCTAA
CATCGCAGATACTCAACCACCTCCGTTTCCAACTGCATTTGTAGAACCGT
ATGATATTAAGCAAATATCTGTGTTCACTTCGCCTCACTTTACTGAACCA
GTCAGAACTGATGCCGATGTTTCTGCGTTGCCTGAGAACGCGTGGCTTTT
CTGGAGTAAGGATACTTTTGAAGAAGCTCCAATTCCGACACGGGGCGTAA
AGCTTGACGGCTCTCATATCAAGAAAGTGATAAAACCAAAAGAGGAACCT
TCAAAGAGCGAATTAATGTTACAAGATGAAGCCATATCTTTGGCTAAGAA
GATCAGGAAAACGCAGCAGTTCTCCCGATGGCAGTACGATCGAATTGTTG
ACCTTGCTATTGATCGTGATCCTGGTTTATTGGCGGTGACGCGAAACTTT
TCCTCTAATGACAACGAGTTTCAAGTTCATTGCACGCGATTGCTGAGGCG
ACGAGATCCGCGGAGTATCCTGATGGGAGATGGCTTGACACCAGAAGAAG
ACCTTAGAGAGGTTTCAGACGAAGACAGTGCCGAAGATGGTCCGAAACGG
AACCTCGAAGCTCAAGTGGAACTAACGTCTCGAGAATGA