Gcaud1949.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1949.t1
Unique NameGcaud1949.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length73
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_821_length_17530_cov_5.307414contigNODE_821_length_17530_cov_5.307414:4477..4827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705063.1
Preferred nameTMEM167A
PFAMsDUF1242
Max annot lvl2759|Eukaryota
GOsGO:0000139,GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0031090,GO:0031984,GO:0032940,GO:0033036,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0071702,GO:0071705,GO:0098588,GO:0098791
Evalue2.01e-33
EggNOG OGsKOG3808@1|root,KOG3808@2759|Eukaryota
Descriptionprotein secretion
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1949Gcaud1949Gracilaria caudata M_176_S67 malegeneNODE_821_length_17530_cov_5.307414 4477..4827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1949.t1Gcaud1949.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_821_length_17530_cov_5.307414 4477..4827 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1949.t1.start1Gcaud1949.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_821_length_17530_cov_5.307414 4477..4479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1949.t1.CDS1Gcaud1949.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_821_length_17530_cov_5.307414 4477..4624 +
Gcaud1949.t1.CDS2Gcaud1949.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_821_length_17530_cov_5.307414 4757..4827 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1949.t1.exon1Gcaud1949.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_821_length_17530_cov_5.307414 4477..4624 +
Gcaud1949.t1.exon2Gcaud1949.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_821_length_17530_cov_5.307414 4757..4827 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1949.t1.intron1Gcaud1949.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_821_length_17530_cov_5.307414 4625..4756 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1949.t1.stop1Gcaud1949.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_821_length_17530_cov_5.307414 4825..4827 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1949.t1 ID=Gcaud1949.t1|Name=Gcaud1949.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=73bp
MSAIFNFQSLLIVILLVICTCAYIRSMYPSLLDRNKQGFLGVFWKAARIG
ERLSATVAACCAIMALALLFGK*
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spliced messenger RNA

>Gcaud1949.t1 ID=Gcaud1949.t1|Name=Gcaud1949.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=219bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:4477..4827+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCGATTTTTAACTTTCAAAGTCTACTCATCGTCATTCTGCTCGT
CATCTGCACCTGTGCGTACATACGATCTATGTACCCTTCTCTACTAGATC
GGAACAAACAAGGCTTTCTAGGAGTATTTTGGAAAGCAGCAAGAATAGGG
GAAAGATTAAGTGCAACAGTGGCTGCGTGTTGCGCAATAATGGCTCTCGC
CCTTCTCTTTGGCAAGTGA
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protein sequence of Gcaud1949.t1

>Gcaud1949.t1 ID=Gcaud1949.t1|Name=Gcaud1949.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=73bp
MSAIFNFQSLLIVILLVICTCAYIRSMYPSLLDRNKQGFLGVFWKAARIG
ERLSATVAACCAIMALALLFGK*
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mRNA from alignment at NODE_821_length_17530_cov_5.307414:4477..4827+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1949.t1 ID=Gcaud1949.t1|Name=Gcaud1949.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=351bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:4477..4827+ (Gracilaria caudata M_176_S67 male)
ATGTCCGCGATTTTTAACTTTCAAAGTCTACTCATCGTCATTCTGCTCGT
CATCTGCACCTGTGCGTACATACGATCTATGTACCCTTCTCTACTAGATC
GGAACAAACAAGGCTTTCTAGGAGTATTTTGGAAAGCAGCAAGAATAGGT
ATGTTTGACAAAGGCAGTGCGTCAATTCTGATCCGCGAGGCCTGGCGCGG
TTCGAAGCGTGCATAACGAAGAAAGCTTGATGGACCTGACTTTCGTACTT
AATGATAATGTCTGTACATTTGACATGTAGGGGAAAGATTAAGTGCAACA
GTGGCTGCGTGTTGCGCAATAATGGCTCTCGCCCTTCTCTTTGGCAAGTG
A
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Coding sequence (CDS) from alignment at NODE_821_length_17530_cov_5.307414:4477..4827+

>Gcaud1949.t1 ID=Gcaud1949.t1|Name=Gcaud1949.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=219bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:4477..4827+ (Gracilaria caudata M_176_S67 male)
ATGTCCGCGATTTTTAACTTTCAAAGTCTACTCATCGTCATTCTGCTCGT
CATCTGCACCTGTGCGTACATACGATCTATGTACCCTTCTCTACTAGATC
GGAACAAACAAGGCTTTCTAGGAGTATTTTGGAAAGCAGCAAGAATAGGG
GAAAGATTAAGTGCAACAGTGGCTGCGTGTTGCGCAATAATGGCTCTCGC
CCTTCTCTTTGGCAAGTGA
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