Gcaud1947.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1947.t1
Unique Name	Gcaud1947.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	323

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_804_length_17738_cov_4.544908	contig	NODE_804_length_17738_cov_4.544908:13452..15746 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1947	Gcaud1947	Gracilaria caudata M_176_S67 male	gene	NODE_804_length_17738_cov_4.544908 13452..15746 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1947.t1	Gcaud1947.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_804_length_17738_cov_4.544908 13452..15746 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1947.t1.stop1	Gcaud1947.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_804_length_17738_cov_4.544908 13452..13454 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1947.t1.CDS1	Gcaud1947.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_804_length_17738_cov_4.544908 13452..13977 -
Gcaud1947.t1.CDS2	Gcaud1947.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_804_length_17738_cov_4.544908 15043..15085 -
Gcaud1947.t1.CDS3	Gcaud1947.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_804_length_17738_cov_4.544908 15347..15746 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1947.t1.exon1	Gcaud1947.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_804_length_17738_cov_4.544908 13452..13977 -
Gcaud1947.t1.exon2	Gcaud1947.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_804_length_17738_cov_4.544908 15043..15085 -
Gcaud1947.t1.exon3	Gcaud1947.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_804_length_17738_cov_4.544908 15347..15746 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1947.t1.intron1	Gcaud1947.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_804_length_17738_cov_4.544908 13978..15042 -
Gcaud1947.t1.intron2	Gcaud1947.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_804_length_17738_cov_4.544908 15086..15346 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1947.t1.start1	Gcaud1947.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_804_length_17738_cov_4.544908 15744..15746 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_804_length_17738_cov_4.544908:13452..15746-
coding sequence from alignment at NODE_804_length_17738_cov_4.544908:13452..15746-

mRNA sequence

>Gcaud1947.t1 ID=Gcaud1947.t1|Name=Gcaud1947.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=323bp
MKIICSLFILGSAVLFGTALAAESYPDGMPDTSERQKSSGCSLPPHVAYC
ADVMRVGSQLDHETAEHFADLQEEFVDRAIDDCSWESFDGKMGLDECVST
LSRFVEENPVEDEGEMAEMSIAERGIKIRCFPKYDIFHAVQYAPWIVPLT
GMLGKAVGADPGEGIEQTMKEKAVEEMIQDKVEEIAGETVANSEQVETIA
EKIADAVADKVPTSMLGAGAMASMRDDDKGGSGLMEQASSLLGGGGSGEQ
KKSDASDLMGQAASFLGGGGGDSGEQKKTDASDLMGQAASFLGSGGGGDD
DEKKKDAAEDLMGQAASFFGKQ*

spliced messenger RNA

>Gcaud1947.t1 ID=Gcaud1947.t1|Name=Gcaud1947.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=969bp|location=Sequence derived from alignment at NODE_804_length_17738_cov_4.544908:13452..15746- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATTATCTGTTCTCTATTCATTCTGGGTAGTGCCGTTCTGTTTGG
TACTGCTTTGGCTGCGGAGAGCTACCCTGATGGCATGCCCGATACATCAG
AGAGGCAGAAATCTTCCGGCTGCTCTTTGCCACCACATGTGGCCTACTGC
GCCGATGTGATGAGAGTGGGAAGTCAGCTGGATCACGAGACCGCCGAGCA
CTTTGCTGATCTGCAGGAAGAGTTTGTTGACCGTGCTATTGATGACTGTT
CCTGGGAGTCGTTTGATGGAAAGATGGGTTTGGATGAGTGTGTCTCAACT
TTGTCTCGTTTCGTGGAAGAGAACCCTGTTGAAGATGAGGGTGAGATGGC
AGAGATGAGCATTGCGGAGCGAGGAATCAAAATCAGATGCTTCCCTAAAT
ATGATATCTTTCATGCTGTACAGTATGCCCCTTGGATTGTACCGCTTACC
GGAATGCTGGGAAAGGCGGTGGGCGCCGATCCGGGAGAGGGCATCGAGCA
AACCATGAAGGAGAAGGCCGTCGAGGAAATGATTCAAGACAAGGTCGAGG
AAATTGCGGGCGAAACGGTTGCCAATTCTGAGCAGGTGGAGACCATCGCT
GAGAAGATTGCTGACGCTGTCGCCGATAAGGTGCCTACCTCTATGCTCGG
CGCGGGAGCTATGGCAAGCATGCGCGATGATGACAAGGGTGGCTCTGGTC
TGATGGAACAGGCTTCCAGTTTGTTGGGTGGTGGTGGTAGTGGCGAGCAG
AAGAAGAGTGACGCTAGTGACTTGATGGGACAGGCTGCTAGTTTTCTTGG
TGGTGGTGGTGGTGATAGTGGTGAACAGAAGAAGACTGACGCCAGTGACC
TGATGGGACAGGCTGCCAGTTTTCTCGGTAGCGGCGGTGGTGGTGATGAT
GATGAAAAGAAGAAGGACGCCGCCGAGGATCTGATGGGACAGGCTGCCAG
CTTCTTCGGCAAGCAATAG

protein sequence of Gcaud1947.t1

>Gcaud1947.t1 ID=Gcaud1947.t1|Name=Gcaud1947.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=323bp
MKIICSLFILGSAVLFGTALAAESYPDGMPDTSERQKSSGCSLPPHVAYC
ADVMRVGSQLDHETAEHFADLQEEFVDRAIDDCSWESFDGKMGLDECVST
LSRFVEENPVEDEGEMAEMSIAERGIKIRCFPKYDIFHAVQYAPWIVPLT
GMLGKAVGADPGEGIEQTMKEKAVEEMIQDKVEEIAGETVANSEQVETIA
EKIADAVADKVPTSMLGAGAMASMRDDDKGGSGLMEQASSLLGGGGSGEQ
KKSDASDLMGQAASFLGGGGGDSGEQKKTDASDLMGQAASFLGSGGGGDD
DEKKKDAAEDLMGQAASFFGKQ*

mRNA from alignment at NODE_804_length_17738_cov_4.544908:13452..15746-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1947.t1 ID=Gcaud1947.t1|Name=Gcaud1947.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2295bp|location=Sequence derived from alignment at NODE_804_length_17738_cov_4.544908:13452..15746- (Gracilaria caudata M_176_S67 male)
ATGAAGATTATCTGTTCTCTATTCATTCTGGGTAGTGCCGTTCTGTTTGG
TACTGCTTTGGCTGCGGAGAGCTACCCTGATGGCATGCCCGATACATCAG
AGAGGCAGAAATCTTCCGGCTGCTCTTTGCCACCACATGTGGCCTACTGC
GCCGATGTGATGAGAGTGGGAAGTCAGCTGGATCACGAGACCGCCGAGCA
CTTTGCTGATCTGCAGGAAGAGTTTGTTGACCGTGCTATTGATGACTGTT
CCTGGGAGTCGTTTGATGGAAAGATGGGTTTGGATGAGTGTGTCTCAACT
TTGTCTCGTTTCGTGGAAGAGAACCCTGTTGAAGATGAGGGTGAGATGGC
AGAGATGAGCATTGCGGAGCGAGGAATCAAAATCAGATGCTTCCCTAAAT
GTATGAAGGTCTGCCGAAGGAGGAGGTCTTTCAGGATCTGCCGATTGAGG
TGCCGACGTGTGTGCAGAATCACTCGCCACTAGAGTGAGTGCATGGAAGC
ATTCGTTCCCGCCGTCTACTCGGACATGGGGGCGTTGAGGTGGGTGATAA
ATGGAAGACAAGCAATAGTGTCAACTAGCTGTTGAGAACTATGTCTAGAA
CCGTACATGCTTAGCTAGCTTGTTAGGTTCAAATGCCCGTAAAACTTTCT
CGAGAAAGAAGATGATATCTTTCATGCTGTACAGTATGCCCCTTGGATTG
TACCGTAAGTCTCTCCTACAAAATGTTGACATTTCGCAATGGCTCGAGGA
TTTGAAGGCATGTAGTGGGCTAAAGAGTTGTCCTGTGCACAGAAGAGCTT
CTCAGTGCTTGAGGTCAGGGCAAAAGTTTGGTTGAATAGAAACGCTCTAC
CCTTGTACACTACCCTTACGTCGTACTTAGAATGTGAAAAAAGTGGAGGG
CAATTTCTCGGCGCAAGCAATGTTTGTTGCTGCTTCTCCATTGGCCACAT
GGGTTTGGCATAAAATAGGCTTGCCCCACAGGACCAGCAAAGTGAGAGCT
ATCTTCTTCCAACTTTCTTTACTCTGCTCTTGACCGTTCTAGTTGTTTCA
CTGTGCGACAAGAACACAGAAGGGACAAAAGATGTTGGGGGTTCGCAGAC
GTTCTTTGACACTTTCCTGTACAGTATCATCATGATCACGGATTATTTGC
TCTTGATCGTATTGTACTGTCAATCGGGTCCGGCGGGGTAACCGAGAAGG
CGTGGTGCCATCGGTAGTCGCCGGGCCTAATGATGAACACACCATGCTTG
TAAACAAAGCTCGTGTTCAGTCGTGCGCTTCATGAATGCGTGGCGAGTAC
TAAGCCCGGTGGGCGAAGGGTCAAAATGTAAGTCGAAAATGGCAACTTGA
TACAAGTGTAGACGCCACCGCCCGCACAACGGAAGGTGGGGGAACGTGAA
CCGGTCATGAGGTTAATGCTCCGCCCTGTCACGGTGACAAGAGCGACCGC
TTCCATTCGAGCGTCACTGCACGTCGAATGGCTGTAAGTGGGCCGCATCT
GTAAGTCCGATCACTTTTGGCGCGTGCGTTGGATTTTTGTGCGGCCAATC
ATAACGATGCAGCGCCCCTTGGAAGGCGCAGATATTTCATCCCACAAAGA
ACCAGCAGTCTCGGGAGCGAGAAGCATTGCCGCATCGCCTACAAGGGTAT
AAGAGCGCCCAGTTCGCACCCGCCCGACACTAACCTTCCGTCCCATTACC
CAAGTTCACGCCCGCATCGAAACACTTTCAAATCGTTTGAGACCACTTAA
ACCACAAAAACATGGACAGGCTTACCGGAATGCTGGGAAAGGCGGTGGGC
GCCGATCCGGGAGAGGGCATCGAGCAAACCATGAAGGAGAAGGCCGTCGA
GGAAATGATTCAAGACAAGGTCGAGGAAATTGCGGGCGAAACGGTTGCCA
ATTCTGAGCAGGTGGAGACCATCGCTGAGAAGATTGCTGACGCTGTCGCC
GATAAGGTGCCTACCTCTATGCTCGGCGCGGGAGCTATGGCAAGCATGCG
CGATGATGACAAGGGTGGCTCTGGTCTGATGGAACAGGCTTCCAGTTTGT
TGGGTGGTGGTGGTAGTGGCGAGCAGAAGAAGAGTGACGCTAGTGACTTG
ATGGGACAGGCTGCTAGTTTTCTTGGTGGTGGTGGTGGTGATAGTGGTGA
ACAGAAGAAGACTGACGCCAGTGACCTGATGGGACAGGCTGCCAGTTTTC
TCGGTAGCGGCGGTGGTGGTGATGATGATGAAAAGAAGAAGGACGCCGCC
GAGGATCTGATGGGACAGGCTGCCAGCTTCTTCGGCAAGCAATAG

Coding sequence (CDS) from alignment at NODE_804_length_17738_cov_4.544908:13452..15746-

>Gcaud1947.t1 ID=Gcaud1947.t1|Name=Gcaud1947.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=969bp|location=Sequence derived from alignment at NODE_804_length_17738_cov_4.544908:13452..15746- (Gracilaria caudata M_176_S67 male)
ATGAAGATTATCTGTTCTCTATTCATTCTGGGTAGTGCCGTTCTGTTTGG
TACTGCTTTGGCTGCGGAGAGCTACCCTGATGGCATGCCCGATACATCAG
AGAGGCAGAAATCTTCCGGCTGCTCTTTGCCACCACATGTGGCCTACTGC
GCCGATGTGATGAGAGTGGGAAGTCAGCTGGATCACGAGACCGCCGAGCA
CTTTGCTGATCTGCAGGAAGAGTTTGTTGACCGTGCTATTGATGACTGTT
CCTGGGAGTCGTTTGATGGAAAGATGGGTTTGGATGAGTGTGTCTCAACT
TTGTCTCGTTTCGTGGAAGAGAACCCTGTTGAAGATGAGGGTGAGATGGC
AGAGATGAGCATTGCGGAGCGAGGAATCAAAATCAGATGCTTCCCTAAAT
ATGATATCTTTCATGCTGTACAGTATGCCCCTTGGATTGTACCGCTTACC
GGAATGCTGGGAAAGGCGGTGGGCGCCGATCCGGGAGAGGGCATCGAGCA
AACCATGAAGGAGAAGGCCGTCGAGGAAATGATTCAAGACAAGGTCGAGG
AAATTGCGGGCGAAACGGTTGCCAATTCTGAGCAGGTGGAGACCATCGCT
GAGAAGATTGCTGACGCTGTCGCCGATAAGGTGCCTACCTCTATGCTCGG
CGCGGGAGCTATGGCAAGCATGCGCGATGATGACAAGGGTGGCTCTGGTC
TGATGGAACAGGCTTCCAGTTTGTTGGGTGGTGGTGGTAGTGGCGAGCAG
AAGAAGAGTGACGCTAGTGACTTGATGGGACAGGCTGCTAGTTTTCTTGG
TGGTGGTGGTGGTGATAGTGGTGAACAGAAGAAGACTGACGCCAGTGACC
TGATGGGACAGGCTGCCAGTTTTCTCGGTAGCGGCGGTGGTGGTGATGAT
GATGAAAAGAAGAAGGACGCCGCCGAGGATCTGATGGGACAGGCTGCCAG
CTTCTTCGGCAAGCAATAG