Gcaud1936.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1936.t1
Unique NameGcaud1936.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:38156..38930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704887.1
PFAMsFer4
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03941,ko:K09534
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0046872,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
Evalue2.23e-73
EggNOG OGsCOG1143@1|root,KOG3256@2759|Eukaryota
EC1.6.5.3,1.6.99.3
DescriptionNADH dehydrogenase activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1936Gcaud1936Gracilaria caudata M_176_S67 malegeneNODE_105_length_50300_cov_4.471768 38156..38930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1936.t1Gcaud1936.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_105_length_50300_cov_4.471768 38156..38930 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1936.t1.start1Gcaud1936.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_105_length_50300_cov_4.471768 38156..38158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1936.t1.CDS1Gcaud1936.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 38156..38309 +
Gcaud1936.t1.CDS2Gcaud1936.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 38449..38930 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1936.t1.exon1Gcaud1936.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 38156..38309 +
Gcaud1936.t1.exon2Gcaud1936.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 38449..38930 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1936.t1.intron1Gcaud1936.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_105_length_50300_cov_4.471768 38310..38448 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1936.t1.stop1Gcaud1936.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_105_length_50300_cov_4.471768 38928..38930 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1936.t1 ID=Gcaud1936.t1|Name=Gcaud1936.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=212bp
MLTVRSVVRSARILQPGVRSIFSITPRLNEGEKKPTEPSTAETPLQTNTQ
HLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEH
ALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDGSRRTTRYDIDMTK
CIFCGACQEACPVDAIVEGPNYEYATETHEELLYNKEKLLANGDRWESEI
AKNIANESMYR*
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spliced messenger RNA

>Gcaud1936.t1 ID=Gcaud1936.t1|Name=Gcaud1936.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=636bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:38156..38930+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTACTGTGAGAAGCGTCGTGCGGTCAGCGCGCATTCTGCAGCCGGG
TGTGCGCTCAATCTTCTCGATCACCCCCCGATTAAACGAGGGTGAGAAGA
AACCAACCGAGCCTTCTACTGCTGAGACTCCGCTTCAGACTAATACACAA
CACCTCGTCACACGCACCGCAGAGGCTCTCTTCCTCACGGAGATGTTCCG
TGGCCTTGCATTAACGCTGCAGTACTTCTTCCAACCCAAGGTCACGCTCA
ATTACCCAATGGAGAAGGGCCCCCTCTCTCCCCGCTTTCGAGGCGAACAT
GCATTGCGTCGCTATCCGTCTGGCGAGGAGCGTTGTATCGCGTGCAAACT
CTGTGAGGCCGTTTGTCCGGCACAGGCCATCACCATTGAAGCCGAGCCAC
GCCCTGACGGATCGAGACGAACGACTAGATATGATATCGACATGACTAAG
TGCATCTTCTGCGGTGCTTGTCAGGAGGCTTGTCCTGTTGATGCTATTGT
AGAAGGACCCAACTATGAGTACGCGACCGAGACGCATGAGGAGCTTTTAT
ACAACAAGGAGAAGTTATTAGCCAATGGCGATAGATGGGAGTCTGAAATC
GCTAAGAACATTGCCAACGAGAGCATGTACCGCTGA
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protein sequence of Gcaud1936.t1

>Gcaud1936.t1 ID=Gcaud1936.t1|Name=Gcaud1936.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=212bp
MLTVRSVVRSARILQPGVRSIFSITPRLNEGEKKPTEPSTAETPLQTNTQ
HLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEH
ALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDGSRRTTRYDIDMTK
CIFCGACQEACPVDAIVEGPNYEYATETHEELLYNKEKLLANGDRWESEI
AKNIANESMYR*
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mRNA from alignment at NODE_105_length_50300_cov_4.471768:38156..38930+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1936.t1 ID=Gcaud1936.t1|Name=Gcaud1936.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=775bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:38156..38930+ (Gracilaria caudata M_176_S67 male)
ATGCTTACTGTGAGAAGCGTCGTGCGGTCAGCGCGCATTCTGCAGCCGGG
TGTGCGCTCAATCTTCTCGATCACCCCCCGATTAAACGAGGGTGAGAAGA
AACCAACCGAGCCTTCTACTGCTGAGACTCCGCTTCAGACTAATACACAA
CACCGTACGTTCTCTTTCGCATTGGTTCGCGATAATTCGATCGGAATCAA
CCCAACTGCTTAACCTCTCACCATATTTACTGTTTCCCTTTTCACTCCGT
TTCCATGCGATTTGTTTCTGTTCGTTTCTTCCTTCCTTCACAGTCGTCAC
ACGCACCGCAGAGGCTCTCTTCCTCACGGAGATGTTCCGTGGCCTTGCAT
TAACGCTGCAGTACTTCTTCCAACCCAAGGTCACGCTCAATTACCCAATG
GAGAAGGGCCCCCTCTCTCCCCGCTTTCGAGGCGAACATGCATTGCGTCG
CTATCCGTCTGGCGAGGAGCGTTGTATCGCGTGCAAACTCTGTGAGGCCG
TTTGTCCGGCACAGGCCATCACCATTGAAGCCGAGCCACGCCCTGACGGA
TCGAGACGAACGACTAGATATGATATCGACATGACTAAGTGCATCTTCTG
CGGTGCTTGTCAGGAGGCTTGTCCTGTTGATGCTATTGTAGAAGGACCCA
ACTATGAGTACGCGACCGAGACGCATGAGGAGCTTTTATACAACAAGGAG
AAGTTATTAGCCAATGGCGATAGATGGGAGTCTGAAATCGCTAAGAACAT
TGCCAACGAGAGCATGTACCGCTGA
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Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:38156..38930+

>Gcaud1936.t1 ID=Gcaud1936.t1|Name=Gcaud1936.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=636bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:38156..38930+ (Gracilaria caudata M_176_S67 male)
ATGCTTACTGTGAGAAGCGTCGTGCGGTCAGCGCGCATTCTGCAGCCGGG
TGTGCGCTCAATCTTCTCGATCACCCCCCGATTAAACGAGGGTGAGAAGA
AACCAACCGAGCCTTCTACTGCTGAGACTCCGCTTCAGACTAATACACAA
CACCTCGTCACACGCACCGCAGAGGCTCTCTTCCTCACGGAGATGTTCCG
TGGCCTTGCATTAACGCTGCAGTACTTCTTCCAACCCAAGGTCACGCTCA
ATTACCCAATGGAGAAGGGCCCCCTCTCTCCCCGCTTTCGAGGCGAACAT
GCATTGCGTCGCTATCCGTCTGGCGAGGAGCGTTGTATCGCGTGCAAACT
CTGTGAGGCCGTTTGTCCGGCACAGGCCATCACCATTGAAGCCGAGCCAC
GCCCTGACGGATCGAGACGAACGACTAGATATGATATCGACATGACTAAG
TGCATCTTCTGCGGTGCTTGTCAGGAGGCTTGTCCTGTTGATGCTATTGT
AGAAGGACCCAACTATGAGTACGCGACCGAGACGCATGAGGAGCTTTTAT
ACAACAAGGAGAAGTTATTAGCCAATGGCGATAGATGGGAGTCTGAAATC
GCTAAGAACATTGCCAACGAGAGCATGTACCGCTGA
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