Gcaud1935.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1935.t2
Unique Name	Gcaud1935.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	471

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:34928..36403 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1935	Gcaud1935	Gracilaria caudata M_176_S67 male	gene	NODE_105_length_50300_cov_4.471768 34928..37504 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1935.t2	Gcaud1935.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_105_length_50300_cov_4.471768 34928..36403 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1935.t2.stop1	Gcaud1935.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_105_length_50300_cov_4.471768 34928..34930 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1935.t2.CDS1	Gcaud1935.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_105_length_50300_cov_4.471768 34928..36052 -
Gcaud1935.t2.CDS2	Gcaud1935.t2.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_105_length_50300_cov_4.471768 36116..36403 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1935.t2.exon1	Gcaud1935.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_105_length_50300_cov_4.471768 34928..36052 -
Gcaud1935.t2.exon2	Gcaud1935.t2.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_105_length_50300_cov_4.471768 36116..36403 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1935.t2.intron1	Gcaud1935.t2.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_105_length_50300_cov_4.471768 36053..36115 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1935.t2.start1	Gcaud1935.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_105_length_50300_cov_4.471768 36401..36403 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_105_length_50300_cov_4.471768:34928..36403-
coding sequence from alignment at NODE_105_length_50300_cov_4.471768:34928..36403-

mRNA sequence

>Gcaud1935.t2 ID=Gcaud1935.t2|Name=Gcaud1935.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=471bp
MQTPTPTAVPPGGSAQTPQPVRTIPGHANLPPLSHEGLINVRMPKPADDE
DWDRFVFFKHRPRRHDFGKNCYLSDYSPFAALAPAVADEPPSTICACMAP
YPVTTSPWYCKGCRSAGLPDGQPIRIPDPPSNLSLAAQALHRPIIDAREG
NPMDLVLHPSLMAMFREHYGGRDWLQCYTCKRRRIVPSGLLSESVKIPFV
CSGMFWVPESERNCTSHMDAETQRIEKYINQQAALRGERRKALLESFGNG
SDDESESSLRNDPSNVKLSARSSTHHPGQPKKPLSNHTAIPNGTSVQDPV
PKTVPSVQANTESLIERTKAVSIGQPSPEIAQANGFTPMEVDTMVAAQPV
HSNTNRTQPGDDMTGTTPQQSTATQAQRPVLGPGTATETKKEDTKQEDSV
SAPSMKPEDVQQELLVFIAELELDEPTEDLLTDLALTNNKTLAQIYIAFR
SNKERFKRQAIRFAKRTAKP*

spliced messenger RNA

>Gcaud1935.t2 ID=Gcaud1935.t2|Name=Gcaud1935.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1413bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:34928..36403- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGACCCCCACACCAACGGCGGTACCACCAGGTGGTTCTGCGCAAAC
CCCTCAACCAGTACGAACGATTCCCGGACATGCGAACTTGCCACCGCTAT
CACATGAGGGCCTCATTAATGTTCGCATGCCAAAGCCTGCTGATGATGAG
GACTGGGATCGCTTCGTTTTCTTTAAGCATAGACCGCGACGCCATGACTT
CGGAAAGAACTGCTATCTTTCTGACTATTCTCCTTTTGCGGCACTGGCTC
CAGCAGTAGCGGACGAACCACCTTCAACAATTTGTGCGTGTATGGCCCCC
TATCCGGTCACGACCTCCCCATGGTATTGCAAGGGGTGTCGCTCTGCCGG
ACTGCCGGATGGCCAACCGATACGGATACCGGACCCTCCTTCAAATCTAT
CTCTCGCTGCACAGGCATTACATCGCCCTATCATTGACGCAAGGGAAGGC
AACCCAATGGATTTGGTGCTGCATCCTTCCTTGATGGCCATGTTTCGCGA
GCATTACGGGGGACGTGATTGGCTCCAATGTTACACATGCAAGCGACGGA
GAATTGTCCCGAGCGGGTTACTCTCAGAGTCTGTGAAGATCCCTTTCGTA
TGTAGCGGGATGTTTTGGGTACCTGAGAGCGAGCGGAATTGTACGTCACA
TATGGACGCTGAAACGCAGCGCATTGAGAAGTACATTAACCAACAAGCGG
CCCTGCGCGGCGAGCGAAGAAAGGCTCTACTGGAAAGCTTTGGTAACGGT
TCGGATGACGAAAGTGAGAGTTCGTTACGCAACGACCCGTCAAACGTGAA
GCTGTCAGCAAGATCGAGCACTCATCATCCTGGACAGCCAAAGAAGCCAC
TCTCCAATCACACAGCGATTCCAAACGGAACCTCTGTTCAAGATCCGGTT
CCAAAAACTGTCCCGTCAGTACAAGCCAACACTGAGAGTCTCATTGAGCG
AACAAAAGCTGTAAGTATTGGGCAACCGTCTCCCGAAATCGCTCAAGCTA
ATGGATTTACCCCAATGGAAGTGGACACAATGGTTGCAGCGCAACCCGTC
CACTCAAATACGAACCGCACACAGCCTGGGGATGATATGACTGGCACAAC
ACCGCAACAGTCGACCGCTACTCAAGCTCAGAGACCCGTGCTAGGCCCAG
GGACCGCCACCGAGACCAAAAAGGAAGATACTAAACAAGAGGATAGCGTT
AGTGCACCTAGCATGAAGCCAGAGGACGTACAACAGGAATTGCTGGTATT
CATTGCAGAGTTGGAACTTGACGAGCCTACGGAAGATTTATTAACAGATC
TAGCTTTGACTAACAACAAGACTTTGGCTCAAATTTACATCGCATTCCGA
TCGAACAAGGAGCGATTCAAACGTCAAGCTATTCGATTCGCAAAAAGAAC
AGCAAAACCTTGA

protein sequence of Gcaud1935.t2

>Gcaud1935.t2 ID=Gcaud1935.t2|Name=Gcaud1935.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=471bp
MQTPTPTAVPPGGSAQTPQPVRTIPGHANLPPLSHEGLINVRMPKPADDE
DWDRFVFFKHRPRRHDFGKNCYLSDYSPFAALAPAVADEPPSTICACMAP
YPVTTSPWYCKGCRSAGLPDGQPIRIPDPPSNLSLAAQALHRPIIDAREG
NPMDLVLHPSLMAMFREHYGGRDWLQCYTCKRRRIVPSGLLSESVKIPFV
CSGMFWVPESERNCTSHMDAETQRIEKYINQQAALRGERRKALLESFGNG
SDDESESSLRNDPSNVKLSARSSTHHPGQPKKPLSNHTAIPNGTSVQDPV
PKTVPSVQANTESLIERTKAVSIGQPSPEIAQANGFTPMEVDTMVAAQPV
HSNTNRTQPGDDMTGTTPQQSTATQAQRPVLGPGTATETKKEDTKQEDSV
SAPSMKPEDVQQELLVFIAELELDEPTEDLLTDLALTNNKTLAQIYIAFR
SNKERFKRQAIRFAKRTAKP*

mRNA from alignment at NODE_105_length_50300_cov_4.471768:34928..36403-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1935.t2 ID=Gcaud1935.t2|Name=Gcaud1935.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:34928..36403- (Gracilaria caudata M_176_S67 male)
ATGCAGACCCCCACACCAACGGCGGTACCACCAGGTGGTTCTGCGCAAAC
CCCTCAACCAGTACGAACGATTCCCGGACATGCGAACTTGCCACCGCTAT
CACATGAGGGCCTCATTAATGTTCGCATGCCAAAGCCTGCTGATGATGAG
GACTGGGATCGCTTCGTTTTCTTTAAGCATAGACCGCGACGCCATGACTT
CGGAAAGAACTGCTATCTTTCTGACTATTCTCCTTTTGCGGCACTGGCTC
CAGCAGTAGCGGACGAACCACCTTCAACAATTTGTGCGGTATGTGGCGGA
GGTTATAATCTCATTCCTTGTAGCTCCTGCGTTTGCGCTTTTCATGCGAA
GTGTATGGCCCCCTATCCGGTCACGACCTCCCCATGGTATTGCAAGGGGT
GTCGCTCTGCCGGACTGCCGGATGGCCAACCGATACGGATACCGGACCCT
CCTTCAAATCTATCTCTCGCTGCACAGGCATTACATCGCCCTATCATTGA
CGCAAGGGAAGGCAACCCAATGGATTTGGTGCTGCATCCTTCCTTGATGG
CCATGTTTCGCGAGCATTACGGGGGACGTGATTGGCTCCAATGTTACACA
TGCAAGCGACGGAGAATTGTCCCGAGCGGGTTACTCTCAGAGTCTGTGAA
GATCCCTTTCGTATGTAGCGGGATGTTTTGGGTACCTGAGAGCGAGCGGA
ATTGTACGTCACATATGGACGCTGAAACGCAGCGCATTGAGAAGTACATT
AACCAACAAGCGGCCCTGCGCGGCGAGCGAAGAAAGGCTCTACTGGAAAG
CTTTGGTAACGGTTCGGATGACGAAAGTGAGAGTTCGTTACGCAACGACC
CGTCAAACGTGAAGCTGTCAGCAAGATCGAGCACTCATCATCCTGGACAG
CCAAAGAAGCCACTCTCCAATCACACAGCGATTCCAAACGGAACCTCTGT
TCAAGATCCGGTTCCAAAAACTGTCCCGTCAGTACAAGCCAACACTGAGA
GTCTCATTGAGCGAACAAAAGCTGTAAGTATTGGGCAACCGTCTCCCGAA
ATCGCTCAAGCTAATGGATTTACCCCAATGGAAGTGGACACAATGGTTGC
AGCGCAACCCGTCCACTCAAATACGAACCGCACACAGCCTGGGGATGATA
TGACTGGCACAACACCGCAACAGTCGACCGCTACTCAAGCTCAGAGACCC
GTGCTAGGCCCAGGGACCGCCACCGAGACCAAAAAGGAAGATACTAAACA
AGAGGATAGCGTTAGTGCACCTAGCATGAAGCCAGAGGACGTACAACAGG
AATTGCTGGTATTCATTGCAGAGTTGGAACTTGACGAGCCTACGGAAGAT
TTATTAACAGATCTAGCTTTGACTAACAACAAGACTTTGGCTCAAATTTA
CATCGCATTCCGATCGAACAAGGAGCGATTCAAACGTCAAGCTATTCGAT
TCGCAAAAAGAACAGCAAAACCTTGA

Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:34928..36403-

>Gcaud1935.t2 ID=Gcaud1935.t2|Name=Gcaud1935.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1413bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:34928..36403- (Gracilaria caudata M_176_S67 male)
ATGCAGACCCCCACACCAACGGCGGTACCACCAGGTGGTTCTGCGCAAAC
CCCTCAACCAGTACGAACGATTCCCGGACATGCGAACTTGCCACCGCTAT
CACATGAGGGCCTCATTAATGTTCGCATGCCAAAGCCTGCTGATGATGAG
GACTGGGATCGCTTCGTTTTCTTTAAGCATAGACCGCGACGCCATGACTT
CGGAAAGAACTGCTATCTTTCTGACTATTCTCCTTTTGCGGCACTGGCTC
CAGCAGTAGCGGACGAACCACCTTCAACAATTTGTGCGTGTATGGCCCCC
TATCCGGTCACGACCTCCCCATGGTATTGCAAGGGGTGTCGCTCTGCCGG
ACTGCCGGATGGCCAACCGATACGGATACCGGACCCTCCTTCAAATCTAT
CTCTCGCTGCACAGGCATTACATCGCCCTATCATTGACGCAAGGGAAGGC
AACCCAATGGATTTGGTGCTGCATCCTTCCTTGATGGCCATGTTTCGCGA
GCATTACGGGGGACGTGATTGGCTCCAATGTTACACATGCAAGCGACGGA
GAATTGTCCCGAGCGGGTTACTCTCAGAGTCTGTGAAGATCCCTTTCGTA
TGTAGCGGGATGTTTTGGGTACCTGAGAGCGAGCGGAATTGTACGTCACA
TATGGACGCTGAAACGCAGCGCATTGAGAAGTACATTAACCAACAAGCGG
CCCTGCGCGGCGAGCGAAGAAAGGCTCTACTGGAAAGCTTTGGTAACGGT
TCGGATGACGAAAGTGAGAGTTCGTTACGCAACGACCCGTCAAACGTGAA
GCTGTCAGCAAGATCGAGCACTCATCATCCTGGACAGCCAAAGAAGCCAC
TCTCCAATCACACAGCGATTCCAAACGGAACCTCTGTTCAAGATCCGGTT
CCAAAAACTGTCCCGTCAGTACAAGCCAACACTGAGAGTCTCATTGAGCG
AACAAAAGCTGTAAGTATTGGGCAACCGTCTCCCGAAATCGCTCAAGCTA
ATGGATTTACCCCAATGGAAGTGGACACAATGGTTGCAGCGCAACCCGTC
CACTCAAATACGAACCGCACACAGCCTGGGGATGATATGACTGGCACAAC
ACCGCAACAGTCGACCGCTACTCAAGCTCAGAGACCCGTGCTAGGCCCAG
GGACCGCCACCGAGACCAAAAAGGAAGATACTAAACAAGAGGATAGCGTT
AGTGCACCTAGCATGAAGCCAGAGGACGTACAACAGGAATTGCTGGTATT
CATTGCAGAGTTGGAACTTGACGAGCCTACGGAAGATTTATTAACAGATC
TAGCTTTGACTAACAACAAGACTTTGGCTCAAATTTACATCGCATTCCGA
TCGAACAAGGAGCGATTCAAACGTCAAGCTATTCGATTCGCAAAAAGAAC
AGCAAAACCTTGA