Gcaud1933.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1933.t1
Unique NameGcaud1933.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:31773..32210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog383381.EH30_02975
Preferred namerpmA
PFAMsRibosomal_L27
Max annot lvl204457|Sphingomonadales
KEGG koko:K02899
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Evalue1.18e-23
EggNOG OGsCOG0211@1|root,COG0211@2|Bacteria,1MZGH@1224|Proteobacteria,2UBUX@28211|Alphaproteobacteria,2K60H@204457|Sphingomonadales
DescriptionBelongs to the bacterial ribosomal protein bL27 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1933Gcaud1933Gracilaria caudata M_176_S67 malegeneNODE_105_length_50300_cov_4.471768 31773..32210 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1933.t1.stop1Gcaud1933.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_105_length_50300_cov_4.471768 31773..31775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1933.t1.CDS1Gcaud1933.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 31773..32210 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1933.t1.exon1Gcaud1933.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 31773..32210 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1933.t1.start1Gcaud1933.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_105_length_50300_cov_4.471768 32208..32210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1933.t1Gcaud1933.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_105_length_50300_cov_4.471768 31773..32210 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1933.t1 ID=Gcaud1933.t1|Name=Gcaud1933.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=146bp
MQTLISGFRRIASSIPSQATFVRHATKKAKGSSGNGRDSVGKRLGPKVSN
GEYVETGHILVRQRGTKMFPGMDVGCGRDHTLYALTNGIARFCRAKPRPG
SKKSKKGRVYVSVEPAPEWRWKSIQRKIRRLEIARYRGPILHAPR*
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spliced messenger RNA

>Gcaud1933.t1 ID=Gcaud1933.t1|Name=Gcaud1933.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=438bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:31773..32210- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAACTTTGATCTCCGGTTTTCGCCGCATCGCGTCCTCGATCCCCTC
TCAAGCTACATTCGTTCGACACGCAACCAAGAAAGCAAAAGGCTCAAGCG
GCAACGGAAGGGACTCCGTCGGCAAAAGACTAGGCCCAAAAGTGAGCAAC
GGTGAGTATGTCGAGACAGGGCATATTCTGGTGCGGCAACGCGGTACAAA
GATGTTTCCTGGCATGGATGTCGGTTGTGGTCGTGATCATACTTTGTATG
CACTGACGAACGGAATCGCGAGGTTTTGTCGCGCAAAGCCGCGCCCTGGG
TCTAAGAAGTCTAAGAAAGGTCGCGTTTATGTCAGCGTGGAACCGGCACC
GGAGTGGCGATGGAAGTCGATACAGCGGAAGATTAGGAGACTGGAGATCG
CGAGGTATCGTGGACCTATTCTACATGCTCCGAGATAG
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protein sequence of Gcaud1933.t1

>Gcaud1933.t1 ID=Gcaud1933.t1|Name=Gcaud1933.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=146bp
MQTLISGFRRIASSIPSQATFVRHATKKAKGSSGNGRDSVGKRLGPKVSN
GEYVETGHILVRQRGTKMFPGMDVGCGRDHTLYALTNGIARFCRAKPRPG
SKKSKKGRVYVSVEPAPEWRWKSIQRKIRRLEIARYRGPILHAPR*
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mRNA from alignment at NODE_105_length_50300_cov_4.471768:31773..32210-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1933.t1 ID=Gcaud1933.t1|Name=Gcaud1933.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=438bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:31773..32210- (Gracilaria caudata M_176_S67 male)
ATGCAAACTTTGATCTCCGGTTTTCGCCGCATCGCGTCCTCGATCCCCTC
TCAAGCTACATTCGTTCGACACGCAACCAAGAAAGCAAAAGGCTCAAGCG
GCAACGGAAGGGACTCCGTCGGCAAAAGACTAGGCCCAAAAGTGAGCAAC
GGTGAGTATGTCGAGACAGGGCATATTCTGGTGCGGCAACGCGGTACAAA
GATGTTTCCTGGCATGGATGTCGGTTGTGGTCGTGATCATACTTTGTATG
CACTGACGAACGGAATCGCGAGGTTTTGTCGCGCAAAGCCGCGCCCTGGG
TCTAAGAAGTCTAAGAAAGGTCGCGTTTATGTCAGCGTGGAACCGGCACC
GGAGTGGCGATGGAAGTCGATACAGCGGAAGATTAGGAGACTGGAGATCG
CGAGGTATCGTGGACCTATTCTACATGCTCCGAGATAG
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Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:31773..32210-

>Gcaud1933.t1 ID=Gcaud1933.t1|Name=Gcaud1933.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=438bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:31773..32210- (Gracilaria caudata M_176_S67 male)
ATGCAAACTTTGATCTCCGGTTTTCGCCGCATCGCGTCCTCGATCCCCTC
TCAAGCTACATTCGTTCGACACGCAACCAAGAAAGCAAAAGGCTCAAGCG
GCAACGGAAGGGACTCCGTCGGCAAAAGACTAGGCCCAAAAGTGAGCAAC
GGTGAGTATGTCGAGACAGGGCATATTCTGGTGCGGCAACGCGGTACAAA
GATGTTTCCTGGCATGGATGTCGGTTGTGGTCGTGATCATACTTTGTATG
CACTGACGAACGGAATCGCGAGGTTTTGTCGCGCAAAGCCGCGCCCTGGG
TCTAAGAAGTCTAAGAAAGGTCGCGTTTATGTCAGCGTGGAACCGGCACC
GGAGTGGCGATGGAAGTCGATACAGCGGAAGATTAGGAGACTGGAGATCG
CGAGGTATCGTGGACCTATTCTACATGCTCCGAGATAG
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