Gcaud1931.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1931.t1
Unique Name	Gcaud1931.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	304

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:28996..29907 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDP05184
Max annot lvl	3041\|Chlorophyta
Evalue	1.31e-15
EggNOG OGs	2E99Q@1\|root,2SFNQ@2759\|Eukaryota,37XZY@33090\|Viridiplantae,34ISZ@3041\|Chlorophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1931	Gcaud1931	Gracilaria caudata M_176_S67 male	gene	NODE_105_length_50300_cov_4.471768 28996..29907 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1931.t1.start1	Gcaud1931.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_105_length_50300_cov_4.471768 28996..28998 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1931.t1.CDS1	Gcaud1931.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_105_length_50300_cov_4.471768 28996..29907 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1931.t1.exon1	Gcaud1931.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_105_length_50300_cov_4.471768 28996..29907 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1931.t1.stop1	Gcaud1931.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_105_length_50300_cov_4.471768 29905..29907 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1931.t1	Gcaud1931.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_105_length_50300_cov_4.471768 28996..29907 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_105_length_50300_cov_4.471768:28996..29907+
coding sequence from alignment at NODE_105_length_50300_cov_4.471768:28996..29907+

mRNA sequence

>Gcaud1931.t1 ID=Gcaud1931.t1|Name=Gcaud1931.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=304bp
MSLPGASQQPEQVSAESRNQPASLPCAQPVEGPAQTQDPAPNNGSSPMLL
PMNSNDITSHQPSTDDKAIFSAQKPSCDNTVSSSGTSSVQKVISPPLGSR
IEVLWRIDYDSDEADKMDVDPSAEGPQAVTRWWGATIQDCLKETVGSRCP
QHADRKVYVLLYDAYQEFAEDTATVAFVSDDSLIDLSQLDDVNHGELQWR
MENASDKQAGSNAEDIAQLVSLEQYAAQVSAAVEGAGLSEEADLQVLSTL
PPHVQAQVASGYRRFADHIKSSLATFMQEKPKDYIVTKADVQQMFASMHS
KPT*

spliced messenger RNA

>Gcaud1931.t1 ID=Gcaud1931.t1|Name=Gcaud1931.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=912bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:28996..29907+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTACCCGGCGCCTCGCAACAGCCAGAGCAGGTCTCCGCTGAGTC
AAGAAACCAGCCTGCATCTTTACCTTGTGCTCAGCCTGTGGAGGGTCCCG
CGCAAACACAGGACCCGGCTCCAAACAATGGTTCGTCGCCGATGTTATTA
CCGATGAACTCGAACGATATTACTTCACATCAGCCTTCGACAGACGACAA
GGCAATATTCTCTGCGCAGAAACCCTCATGTGACAACACTGTGTCATCGT
CCGGTACGAGCAGCGTTCAGAAAGTCATCTCTCCGCCGTTAGGGAGTCGC
ATAGAGGTCTTATGGCGCATTGATTACGATTCTGATGAGGCTGATAAAAT
GGATGTCGATCCAAGCGCTGAAGGTCCGCAGGCGGTCACAAGATGGTGGG
GTGCTACCATCCAGGATTGTCTGAAAGAGACGGTCGGTTCAAGATGCCCA
CAACACGCCGACAGAAAAGTATACGTGCTGCTTTACGATGCGTACCAAGA
GTTCGCTGAGGACACCGCAACCGTGGCATTTGTCTCGGATGATAGTCTAA
TTGATTTGTCTCAGCTCGATGATGTGAACCACGGCGAACTGCAATGGCGT
ATGGAAAACGCTAGCGACAAACAAGCTGGATCAAACGCTGAGGACATCGC
ACAGCTCGTCTCGCTTGAACAATACGCTGCTCAGGTTTCCGCTGCTGTGG
AGGGCGCCGGGCTTAGCGAGGAGGCAGATTTACAGGTTCTCAGCACGCTG
CCACCGCACGTTCAGGCGCAAGTAGCGTCAGGTTATCGACGCTTCGCAGA
TCACATAAAGAGCTCGTTGGCAACCTTCATGCAGGAGAAGCCAAAGGACT
ACATCGTAACCAAGGCTGACGTGCAACAGATGTTTGCAAGCATGCACTCA
AAACCCACGTAA

protein sequence of Gcaud1931.t1

>Gcaud1931.t1 ID=Gcaud1931.t1|Name=Gcaud1931.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=304bp
MSLPGASQQPEQVSAESRNQPASLPCAQPVEGPAQTQDPAPNNGSSPMLL
PMNSNDITSHQPSTDDKAIFSAQKPSCDNTVSSSGTSSVQKVISPPLGSR
IEVLWRIDYDSDEADKMDVDPSAEGPQAVTRWWGATIQDCLKETVGSRCP
QHADRKVYVLLYDAYQEFAEDTATVAFVSDDSLIDLSQLDDVNHGELQWR
MENASDKQAGSNAEDIAQLVSLEQYAAQVSAAVEGAGLSEEADLQVLSTL
PPHVQAQVASGYRRFADHIKSSLATFMQEKPKDYIVTKADVQQMFASMHS
KPT*

mRNA from alignment at NODE_105_length_50300_cov_4.471768:28996..29907+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1931.t1 ID=Gcaud1931.t1|Name=Gcaud1931.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=912bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:28996..29907+ (Gracilaria caudata M_176_S67 male)
ATGAGCTTACCCGGCGCCTCGCAACAGCCAGAGCAGGTCTCCGCTGAGTC
AAGAAACCAGCCTGCATCTTTACCTTGTGCTCAGCCTGTGGAGGGTCCCG
CGCAAACACAGGACCCGGCTCCAAACAATGGTTCGTCGCCGATGTTATTA
CCGATGAACTCGAACGATATTACTTCACATCAGCCTTCGACAGACGACAA
GGCAATATTCTCTGCGCAGAAACCCTCATGTGACAACACTGTGTCATCGT
CCGGTACGAGCAGCGTTCAGAAAGTCATCTCTCCGCCGTTAGGGAGTCGC
ATAGAGGTCTTATGGCGCATTGATTACGATTCTGATGAGGCTGATAAAAT
GGATGTCGATCCAAGCGCTGAAGGTCCGCAGGCGGTCACAAGATGGTGGG
GTGCTACCATCCAGGATTGTCTGAAAGAGACGGTCGGTTCAAGATGCCCA
CAACACGCCGACAGAAAAGTATACGTGCTGCTTTACGATGCGTACCAAGA
GTTCGCTGAGGACACCGCAACCGTGGCATTTGTCTCGGATGATAGTCTAA
TTGATTTGTCTCAGCTCGATGATGTGAACCACGGCGAACTGCAATGGCGT
ATGGAAAACGCTAGCGACAAACAAGCTGGATCAAACGCTGAGGACATCGC
ACAGCTCGTCTCGCTTGAACAATACGCTGCTCAGGTTTCCGCTGCTGTGG
AGGGCGCCGGGCTTAGCGAGGAGGCAGATTTACAGGTTCTCAGCACGCTG
CCACCGCACGTTCAGGCGCAAGTAGCGTCAGGTTATCGACGCTTCGCAGA
TCACATAAAGAGCTCGTTGGCAACCTTCATGCAGGAGAAGCCAAAGGACT
ACATCGTAACCAAGGCTGACGTGCAACAGATGTTTGCAAGCATGCACTCA
AAACCCACGTAA

Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:28996..29907+

>Gcaud1931.t1 ID=Gcaud1931.t1|Name=Gcaud1931.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=912bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:28996..29907+ (Gracilaria caudata M_176_S67 male)
ATGAGCTTACCCGGCGCCTCGCAACAGCCAGAGCAGGTCTCCGCTGAGTC
AAGAAACCAGCCTGCATCTTTACCTTGTGCTCAGCCTGTGGAGGGTCCCG
CGCAAACACAGGACCCGGCTCCAAACAATGGTTCGTCGCCGATGTTATTA
CCGATGAACTCGAACGATATTACTTCACATCAGCCTTCGACAGACGACAA
GGCAATATTCTCTGCGCAGAAACCCTCATGTGACAACACTGTGTCATCGT
CCGGTACGAGCAGCGTTCAGAAAGTCATCTCTCCGCCGTTAGGGAGTCGC
ATAGAGGTCTTATGGCGCATTGATTACGATTCTGATGAGGCTGATAAAAT
GGATGTCGATCCAAGCGCTGAAGGTCCGCAGGCGGTCACAAGATGGTGGG
GTGCTACCATCCAGGATTGTCTGAAAGAGACGGTCGGTTCAAGATGCCCA
CAACACGCCGACAGAAAAGTATACGTGCTGCTTTACGATGCGTACCAAGA
GTTCGCTGAGGACACCGCAACCGTGGCATTTGTCTCGGATGATAGTCTAA
TTGATTTGTCTCAGCTCGATGATGTGAACCACGGCGAACTGCAATGGCGT
ATGGAAAACGCTAGCGACAAACAAGCTGGATCAAACGCTGAGGACATCGC
ACAGCTCGTCTCGCTTGAACAATACGCTGCTCAGGTTTCCGCTGCTGTGG
AGGGCGCCGGGCTTAGCGAGGAGGCAGATTTACAGGTTCTCAGCACGCTG
CCACCGCACGTTCAGGCGCAAGTAGCGTCAGGTTATCGACGCTTCGCAGA
TCACATAAAGAGCTCGTTGGCAACCTTCATGCAGGAGAAGCCAAAGGACT
ACATCGTAACCAAGGCTGACGTGCAACAGATGTTTGCAAGCATGCACTCA
AAACCCACGTAA