Gcaud1918.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1918.t1
Unique NameGcaud1918.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length583
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:4327..6335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FXW7
PFAMsmTERF
Max annot lvl2759|Eukaryota
KEGG koko:K15032
Evalue5.76e-16
EggNOG OGsKOG1267@1|root,KOG1267@2759|Eukaryota
Descriptiontermination of mitochondrial transcription
COG categoryS
BRITEko00000,ko03012,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1918Gcaud1918Gracilaria caudata M_176_S67 malegeneNODE_105_length_50300_cov_4.471768 4327..6335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1918.t1Gcaud1918.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_105_length_50300_cov_4.471768 4327..6335 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1918.t1.start1Gcaud1918.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_105_length_50300_cov_4.471768 4327..4329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1918.t1.CDS1Gcaud1918.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 4327..4492 +
Gcaud1918.t1.CDS2Gcaud1918.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 4634..4639 +
Gcaud1918.t1.CDS3Gcaud1918.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 4759..6335 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1918.t1.exon1Gcaud1918.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 4327..4492 +
Gcaud1918.t1.exon2Gcaud1918.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 4634..4639 +
Gcaud1918.t1.exon3Gcaud1918.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 4759..6335 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1918.t1.intron1Gcaud1918.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_105_length_50300_cov_4.471768 4493..4633 +
Gcaud1918.t1.intron2Gcaud1918.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_105_length_50300_cov_4.471768 4640..4758 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1918.t1.stop1Gcaud1918.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_105_length_50300_cov_4.471768 6333..6335 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1918.t1 ID=Gcaud1918.t1|Name=Gcaud1918.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=583bp
MRNTGYRSRDLSHAPAINICDTLAAAIMTSLVSGMSDVGKSSRDVEAAFA
WGDSHLEDRTRGKRSALSRKHQKEETLWLRTLELGRTLLLFMRTATLVPS
SVAFCSPTLWSSFSKALIESPKTRAATCATPRFSSVQTRARLIESSERRT
QVMSIEAKLRSLGAQYAADQAHCLLATKAFDIPETWPALLSVLNEHGITN
LTLSRITSKLGVVKLLNVSPASASNLFHLFGKSLMLSTDQQKQILSTKPG
ILDMDVNLISATLQVLFEDGMRFKDVKRVVLRRPHILLLHPTSISRLAKF
LQSSPLSLPDYKVRSLLRRSPWIFTIDIDTYMAPSIDWLTEYVIQPSRKP
VLAKLILSAPALLGTKRASLHSVMRLLEHEAYLKAKDRVSVVNSLPRILT
CSPEKQLRPVLSFLRNTLQLRYYELRKIVRAFPYILTLDVDQQLIPVVDF
FTQRGVSDVSRLVTRFPPILGNDLQNETLPTVEYLIHELGLTMDEILKFP
ASFSYDLATRIVPRTQFIQKRGGSVREIGLSRILSPSDAEFCQFLQVQLH
FYISFCEARMGAFNESILPEQLESAKRVRKGI*
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spliced messenger RNA

>Gcaud1918.t1 ID=Gcaud1918.t1|Name=Gcaud1918.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:4327..6335+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAACACTGGCTATCGTTCGCGCGATCTGTCCCACGCCCCGGCCAT
AAATATATGTGATACGCTTGCAGCAGCAATTATGACTTCCCTTGTCAGTG
GGATGTCCGACGTCGGCAAGAGCTCCCGAGATGTTGAAGCGGCTTTTGCT
TGGGGCGACTCGCATCTTGAAGATCGTACCAGAGGAAAACGTTCGGCCCT
GTCAAGAAAACATCAGAAGGAGGAAACTTTGTGGCTGCGCACCTTGGAAC
TCGGAAGAACGCTCCTACTTTTCATGCGCACAGCAACTCTCGTTCCTTCA
TCCGTTGCATTCTGTTCTCCTACTCTATGGAGCTCCTTCTCCAAAGCGTT
GATTGAGAGCCCAAAGACCCGAGCCGCAACATGTGCTACACCCCGTTTCT
CATCCGTTCAGACACGCGCGCGACTCATCGAGAGTTCCGAACGTCGGACT
CAAGTTATGAGCATCGAAGCCAAGCTGCGCTCTTTAGGAGCGCAGTATGC
GGCAGATCAAGCTCACTGTCTGTTGGCTACAAAAGCTTTTGACATTCCTG
AGACCTGGCCAGCATTATTGTCTGTTCTAAACGAGCATGGGATCACCAAT
TTGACGCTGTCGCGAATTACTTCGAAGCTTGGAGTCGTCAAGCTGCTCAA
TGTTTCACCTGCTTCTGCTTCAAATTTGTTTCATCTCTTCGGCAAATCTT
TGATGCTGTCTACCGATCAGCAGAAGCAAATCCTTTCAACAAAGCCGGGC
ATTCTCGATATGGACGTGAATTTAATTTCCGCTACACTGCAAGTGCTCTT
TGAAGATGGAATGCGGTTCAAAGATGTTAAACGTGTCGTATTGAGACGCC
CGCACATTCTTTTGCTGCATCCCACTTCAATATCTCGTCTAGCAAAGTTC
TTGCAAAGCTCGCCATTGTCCTTACCTGATTACAAAGTTCGGTCTCTTCT
GCGACGCTCTCCATGGATCTTCACCATCGATATTGACACCTACATGGCTC
CGAGTATCGATTGGCTTACCGAATATGTAATACAGCCATCTCGGAAACCT
GTTCTAGCTAAACTTATTCTTTCGGCACCTGCACTTCTTGGAACGAAAAG
AGCAAGTCTACACTCCGTAATGCGACTCTTAGAACATGAAGCTTATTTGA
AGGCGAAAGACCGAGTATCGGTCGTAAACAGTCTTCCGCGAATTCTCACT
TGTTCTCCTGAGAAGCAGCTAAGACCGGTTCTTTCATTTTTGCGAAACAC
ACTACAACTCCGATATTATGAGCTCCGCAAAATTGTTCGAGCATTTCCGT
ACATATTAACCCTGGATGTAGACCAGCAACTGATTCCCGTTGTGGACTTC
TTTACACAAAGAGGTGTGTCAGATGTTTCTCGGTTGGTCACTCGTTTCCC
TCCAATACTTGGAAATGATCTACAAAACGAGACACTTCCTACTGTGGAGT
ACCTCATTCATGAACTTGGGCTCACTATGGATGAGATTTTGAAGTTCCCA
GCGAGCTTTTCGTACGACTTGGCAACTCGAATTGTACCCAGGACTCAGTT
CATTCAGAAAAGGGGTGGTTCCGTGCGGGAAATTGGTCTCAGTCGAATTT
TGTCTCCATCGGATGCAGAGTTTTGTCAGTTCCTTCAAGTACAGCTTCAT
TTTTATATATCATTCTGCGAAGCAAGGATGGGAGCCTTCAATGAGAGTAT
TCTTCCAGAACAGCTGGAGTCGGCGAAGCGCGTCAGAAAGGGGATATAG
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protein sequence of Gcaud1918.t1

>Gcaud1918.t1 ID=Gcaud1918.t1|Name=Gcaud1918.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=583bp
MRNTGYRSRDLSHAPAINICDTLAAAIMTSLVSGMSDVGKSSRDVEAAFA
WGDSHLEDRTRGKRSALSRKHQKEETLWLRTLELGRTLLLFMRTATLVPS
SVAFCSPTLWSSFSKALIESPKTRAATCATPRFSSVQTRARLIESSERRT
QVMSIEAKLRSLGAQYAADQAHCLLATKAFDIPETWPALLSVLNEHGITN
LTLSRITSKLGVVKLLNVSPASASNLFHLFGKSLMLSTDQQKQILSTKPG
ILDMDVNLISATLQVLFEDGMRFKDVKRVVLRRPHILLLHPTSISRLAKF
LQSSPLSLPDYKVRSLLRRSPWIFTIDIDTYMAPSIDWLTEYVIQPSRKP
VLAKLILSAPALLGTKRASLHSVMRLLEHEAYLKAKDRVSVVNSLPRILT
CSPEKQLRPVLSFLRNTLQLRYYELRKIVRAFPYILTLDVDQQLIPVVDF
FTQRGVSDVSRLVTRFPPILGNDLQNETLPTVEYLIHELGLTMDEILKFP
ASFSYDLATRIVPRTQFIQKRGGSVREIGLSRILSPSDAEFCQFLQVQLH
FYISFCEARMGAFNESILPEQLESAKRVRKGI*
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mRNA from alignment at NODE_105_length_50300_cov_4.471768:4327..6335+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1918.t1 ID=Gcaud1918.t1|Name=Gcaud1918.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2009bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:4327..6335+ (Gracilaria caudata M_176_S67 male)
ATGCGAAACACTGGCTATCGTTCGCGCGATCTGTCCCACGCCCCGGCCAT
AAATATATGTGATACGCTTGCAGCAGCAATTATGACTTCCCTTGTCAGTG
GGATGTCCGACGTCGGCAAGAGCTCCCGAGATGTTGAAGCGGCTTTTGCT
TGGGGCGACTCGCATCGTGCGAGTGATCATACTCTTCGTCAGGGATGATA
CACATCGATAGCGTTGCAGACGGGAATAACTGCTGAGAGCACAAGCTGTG
AAGCACGAGGTGCTAGGGCCACAACAAAATAGCTACAGAGTACATTAGGC
CCATGAGTTGAAGGTATGTGAGTAGATACTTTGTATTATTTTTATCTTTG
CGAACCTCACCTGTCAATCTCCGAACGTGGGCTCAAATCGGCTAGGATCT
GAGTCGTTTCCCTTTTGCCTCACGTCCGACAGATCGTACCAGAGGAAAAC
GTTCGGCCCTGTCAAGAAAACATCAGAAGGAGGAAACTTTGTGGCTGCGC
ACCTTGGAACTCGGAAGAACGCTCCTACTTTTCATGCGCACAGCAACTCT
CGTTCCTTCATCCGTTGCATTCTGTTCTCCTACTCTATGGAGCTCCTTCT
CCAAAGCGTTGATTGAGAGCCCAAAGACCCGAGCCGCAACATGTGCTACA
CCCCGTTTCTCATCCGTTCAGACACGCGCGCGACTCATCGAGAGTTCCGA
ACGTCGGACTCAAGTTATGAGCATCGAAGCCAAGCTGCGCTCTTTAGGAG
CGCAGTATGCGGCAGATCAAGCTCACTGTCTGTTGGCTACAAAAGCTTTT
GACATTCCTGAGACCTGGCCAGCATTATTGTCTGTTCTAAACGAGCATGG
GATCACCAATTTGACGCTGTCGCGAATTACTTCGAAGCTTGGAGTCGTCA
AGCTGCTCAATGTTTCACCTGCTTCTGCTTCAAATTTGTTTCATCTCTTC
GGCAAATCTTTGATGCTGTCTACCGATCAGCAGAAGCAAATCCTTTCAAC
AAAGCCGGGCATTCTCGATATGGACGTGAATTTAATTTCCGCTACACTGC
AAGTGCTCTTTGAAGATGGAATGCGGTTCAAAGATGTTAAACGTGTCGTA
TTGAGACGCCCGCACATTCTTTTGCTGCATCCCACTTCAATATCTCGTCT
AGCAAAGTTCTTGCAAAGCTCGCCATTGTCCTTACCTGATTACAAAGTTC
GGTCTCTTCTGCGACGCTCTCCATGGATCTTCACCATCGATATTGACACC
TACATGGCTCCGAGTATCGATTGGCTTACCGAATATGTAATACAGCCATC
TCGGAAACCTGTTCTAGCTAAACTTATTCTTTCGGCACCTGCACTTCTTG
GAACGAAAAGAGCAAGTCTACACTCCGTAATGCGACTCTTAGAACATGAA
GCTTATTTGAAGGCGAAAGACCGAGTATCGGTCGTAAACAGTCTTCCGCG
AATTCTCACTTGTTCTCCTGAGAAGCAGCTAAGACCGGTTCTTTCATTTT
TGCGAAACACACTACAACTCCGATATTATGAGCTCCGCAAAATTGTTCGA
GCATTTCCGTACATATTAACCCTGGATGTAGACCAGCAACTGATTCCCGT
TGTGGACTTCTTTACACAAAGAGGTGTGTCAGATGTTTCTCGGTTGGTCA
CTCGTTTCCCTCCAATACTTGGAAATGATCTACAAAACGAGACACTTCCT
ACTGTGGAGTACCTCATTCATGAACTTGGGCTCACTATGGATGAGATTTT
GAAGTTCCCAGCGAGCTTTTCGTACGACTTGGCAACTCGAATTGTACCCA
GGACTCAGTTCATTCAGAAAAGGGGTGGTTCCGTGCGGGAAATTGGTCTC
AGTCGAATTTTGTCTCCATCGGATGCAGAGTTTTGTCAGTTCCTTCAAGT
ACAGCTTCATTTTTATATATCATTCTGCGAAGCAAGGATGGGAGCCTTCA
ATGAGAGTATTCTTCCAGAACAGCTGGAGTCGGCGAAGCGCGTCAGAAAG
GGGATATAG
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Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:4327..6335+

>Gcaud1918.t1 ID=Gcaud1918.t1|Name=Gcaud1918.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1749bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:4327..6335+ (Gracilaria caudata M_176_S67 male)
ATGCGAAACACTGGCTATCGTTCGCGCGATCTGTCCCACGCCCCGGCCAT
AAATATATGTGATACGCTTGCAGCAGCAATTATGACTTCCCTTGTCAGTG
GGATGTCCGACGTCGGCAAGAGCTCCCGAGATGTTGAAGCGGCTTTTGCT
TGGGGCGACTCGCATCTTGAAGATCGTACCAGAGGAAAACGTTCGGCCCT
GTCAAGAAAACATCAGAAGGAGGAAACTTTGTGGCTGCGCACCTTGGAAC
TCGGAAGAACGCTCCTACTTTTCATGCGCACAGCAACTCTCGTTCCTTCA
TCCGTTGCATTCTGTTCTCCTACTCTATGGAGCTCCTTCTCCAAAGCGTT
GATTGAGAGCCCAAAGACCCGAGCCGCAACATGTGCTACACCCCGTTTCT
CATCCGTTCAGACACGCGCGCGACTCATCGAGAGTTCCGAACGTCGGACT
CAAGTTATGAGCATCGAAGCCAAGCTGCGCTCTTTAGGAGCGCAGTATGC
GGCAGATCAAGCTCACTGTCTGTTGGCTACAAAAGCTTTTGACATTCCTG
AGACCTGGCCAGCATTATTGTCTGTTCTAAACGAGCATGGGATCACCAAT
TTGACGCTGTCGCGAATTACTTCGAAGCTTGGAGTCGTCAAGCTGCTCAA
TGTTTCACCTGCTTCTGCTTCAAATTTGTTTCATCTCTTCGGCAAATCTT
TGATGCTGTCTACCGATCAGCAGAAGCAAATCCTTTCAACAAAGCCGGGC
ATTCTCGATATGGACGTGAATTTAATTTCCGCTACACTGCAAGTGCTCTT
TGAAGATGGAATGCGGTTCAAAGATGTTAAACGTGTCGTATTGAGACGCC
CGCACATTCTTTTGCTGCATCCCACTTCAATATCTCGTCTAGCAAAGTTC
TTGCAAAGCTCGCCATTGTCCTTACCTGATTACAAAGTTCGGTCTCTTCT
GCGACGCTCTCCATGGATCTTCACCATCGATATTGACACCTACATGGCTC
CGAGTATCGATTGGCTTACCGAATATGTAATACAGCCATCTCGGAAACCT
GTTCTAGCTAAACTTATTCTTTCGGCACCTGCACTTCTTGGAACGAAAAG
AGCAAGTCTACACTCCGTAATGCGACTCTTAGAACATGAAGCTTATTTGA
AGGCGAAAGACCGAGTATCGGTCGTAAACAGTCTTCCGCGAATTCTCACT
TGTTCTCCTGAGAAGCAGCTAAGACCGGTTCTTTCATTTTTGCGAAACAC
ACTACAACTCCGATATTATGAGCTCCGCAAAATTGTTCGAGCATTTCCGT
ACATATTAACCCTGGATGTAGACCAGCAACTGATTCCCGTTGTGGACTTC
TTTACACAAAGAGGTGTGTCAGATGTTTCTCGGTTGGTCACTCGTTTCCC
TCCAATACTTGGAAATGATCTACAAAACGAGACACTTCCTACTGTGGAGT
ACCTCATTCATGAACTTGGGCTCACTATGGATGAGATTTTGAAGTTCCCA
GCGAGCTTTTCGTACGACTTGGCAACTCGAATTGTACCCAGGACTCAGTT
CATTCAGAAAAGGGGTGGTTCCGTGCGGGAAATTGGTCTCAGTCGAATTT
TGTCTCCATCGGATGCAGAGTTTTGTCAGTTCCTTCAAGTACAGCTTCAT
TTTTATATATCATTCTGCGAAGCAAGGATGGGAGCCTTCAATGAGAGTAT
TCTTCCAGAACAGCTGGAGTCGGCGAAGCGCGTCAGAAAGGGGATATAG
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