Gcaud1916.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1916.t1
Unique NameGcaud1916.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:421..996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1916Gcaud1916Gracilaria caudata M_176_S67 malegeneNODE_105_length_50300_cov_4.471768 421..996 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1916.t1.start1Gcaud1916.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_105_length_50300_cov_4.471768 421..423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1916.t1.CDS1Gcaud1916.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 421..996 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1916.t1.exon1Gcaud1916.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 421..996 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1916.t1.stop1Gcaud1916.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_105_length_50300_cov_4.471768 994..996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1916.t1Gcaud1916.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_105_length_50300_cov_4.471768 421..996 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1916.t1 ID=Gcaud1916.t1|Name=Gcaud1916.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=192bp
MSQGEATRRTDVPQVAMANENDDFDGLLEDFGRRPSVGRRLLYVFFAVEA
VAAAALFFVRVFLIDVNASPVTLAVSVLLSVVILSMSYHNLAFAQAARIR
RTASPPTKGAFKGQLDRFEKAKARFESRISSAALWYSCAYNNALFMIVAP
FLGLYMLSDKLSGDLNLLVSAAAAASLALFNSKSALKAIGE*
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spliced messenger RNA

>Gcaud1916.t1 ID=Gcaud1916.t1|Name=Gcaud1916.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=576bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:421..996+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCAGGGAGAAGCCACTCGTAGAACAGACGTACCTCAGGTAGCAAT
GGCGAACGAAAACGACGACTTCGACGGGCTGCTGGAGGACTTTGGACGTC
GACCGTCCGTTGGGCGCCGGCTGCTGTATGTGTTTTTTGCCGTCGAGGCC
GTGGCCGCGGCCGCGCTGTTCTTCGTGCGAGTATTTCTCATCGATGTCAA
TGCGTCGCCGGTTACGTTGGCAGTAAGCGTGCTGCTGTCCGTCGTTATTC
TGTCCATGTCATACCACAACCTTGCCTTCGCCCAAGCCGCCCGCATTCGA
CGCACGGCCTCACCACCCACCAAGGGCGCGTTCAAGGGCCAGCTGGATCG
CTTCGAAAAGGCCAAGGCGCGCTTTGAATCGCGCATTTCCAGCGCTGCTT
TATGGTACTCTTGCGCTTATAATAATGCCCTCTTCATGATCGTGGCGCCC
TTTCTCGGCTTGTATATGCTTTCTGACAAGCTCAGTGGCGACTTAAATCT
ACTTGTCTCTGCCGCCGCCGCCGCTTCGTTGGCTTTGTTCAATTCCAAGT
CTGCGTTGAAGGCTATTGGAGAGTAA
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protein sequence of Gcaud1916.t1

>Gcaud1916.t1 ID=Gcaud1916.t1|Name=Gcaud1916.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=192bp
MSQGEATRRTDVPQVAMANENDDFDGLLEDFGRRPSVGRRLLYVFFAVEA
VAAAALFFVRVFLIDVNASPVTLAVSVLLSVVILSMSYHNLAFAQAARIR
RTASPPTKGAFKGQLDRFEKAKARFESRISSAALWYSCAYNNALFMIVAP
FLGLYMLSDKLSGDLNLLVSAAAAASLALFNSKSALKAIGE*
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mRNA from alignment at NODE_105_length_50300_cov_4.471768:421..996+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1916.t1 ID=Gcaud1916.t1|Name=Gcaud1916.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=576bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:421..996+ (Gracilaria caudata M_176_S67 male)
ATGAGCCAGGGAGAAGCCACTCGTAGAACAGACGTACCTCAGGTAGCAAT
GGCGAACGAAAACGACGACTTCGACGGGCTGCTGGAGGACTTTGGACGTC
GACCGTCCGTTGGGCGCCGGCTGCTGTATGTGTTTTTTGCCGTCGAGGCC
GTGGCCGCGGCCGCGCTGTTCTTCGTGCGAGTATTTCTCATCGATGTCAA
TGCGTCGCCGGTTACGTTGGCAGTAAGCGTGCTGCTGTCCGTCGTTATTC
TGTCCATGTCATACCACAACCTTGCCTTCGCCCAAGCCGCCCGCATTCGA
CGCACGGCCTCACCACCCACCAAGGGCGCGTTCAAGGGCCAGCTGGATCG
CTTCGAAAAGGCCAAGGCGCGCTTTGAATCGCGCATTTCCAGCGCTGCTT
TATGGTACTCTTGCGCTTATAATAATGCCCTCTTCATGATCGTGGCGCCC
TTTCTCGGCTTGTATATGCTTTCTGACAAGCTCAGTGGCGACTTAAATCT
ACTTGTCTCTGCCGCCGCCGCCGCTTCGTTGGCTTTGTTCAATTCCAAGT
CTGCGTTGAAGGCTATTGGAGAGTAA
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Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:421..996+

>Gcaud1916.t1 ID=Gcaud1916.t1|Name=Gcaud1916.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=576bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:421..996+ (Gracilaria caudata M_176_S67 male)
ATGAGCCAGGGAGAAGCCACTCGTAGAACAGACGTACCTCAGGTAGCAAT
GGCGAACGAAAACGACGACTTCGACGGGCTGCTGGAGGACTTTGGACGTC
GACCGTCCGTTGGGCGCCGGCTGCTGTATGTGTTTTTTGCCGTCGAGGCC
GTGGCCGCGGCCGCGCTGTTCTTCGTGCGAGTATTTCTCATCGATGTCAA
TGCGTCGCCGGTTACGTTGGCAGTAAGCGTGCTGCTGTCCGTCGTTATTC
TGTCCATGTCATACCACAACCTTGCCTTCGCCCAAGCCGCCCGCATTCGA
CGCACGGCCTCACCACCCACCAAGGGCGCGTTCAAGGGCCAGCTGGATCG
CTTCGAAAAGGCCAAGGCGCGCTTTGAATCGCGCATTTCCAGCGCTGCTT
TATGGTACTCTTGCGCTTATAATAATGCCCTCTTCATGATCGTGGCGCCC
TTTCTCGGCTTGTATATGCTTTCTGACAAGCTCAGTGGCGACTTAAATCT
ACTTGTCTCTGCCGCCGCCGCCGCTTCGTTGGCTTTGTTCAATTCCAAGT
CTGCGTTGAAGGCTATTGGAGAGTAA
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