Gcaud1914.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1914.t1
Unique Name	Gcaud1914.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	253

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1565_length_9721_cov_4.172897	contig	NODE_1565_length_9721_cov_4.172897:4297..5055 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1121104.AQXH01000005_gene170
Max annot lvl	976\|Bacteroidetes
Evalue	1.9e-09
EggNOG OGs	COG3914@1\|root,COG3914@2\|Bacteria,4P6AI@976\|Bacteroidetes
Description	O-linked N-acetylglucosamine transferase SPINDLY family
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1914	Gcaud1914	Gracilaria caudata M_176_S67 male	gene	NODE_1565_length_9721_cov_4.172897 4297..5055 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1914.t1.CDS1	Gcaud1914.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1565_length_9721_cov_4.172897 4297..5055 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1914.t1.exon1	Gcaud1914.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1565_length_9721_cov_4.172897 4297..5055 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1914.t1.start1	Gcaud1914.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1565_length_9721_cov_4.172897 5053..5055 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1914.t1	Gcaud1914.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1565_length_9721_cov_4.172897 4297..5055 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1565_length_9721_cov_4.172897:4297..5055-
coding sequence from alignment at NODE_1565_length_9721_cov_4.172897:4297..5055-

mRNA sequence

>Gcaud1914.t1 ID=Gcaud1914.t1|Name=Gcaud1914.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=253bp
MRRPEAQLLLSYLRASDVYLEFGASGTTLAVPPLVAAAFSVEHDVHVCRG
INAEMRRHPRLAASLRAFCVRVETKHAGWGTLSPFEEGSYAAFQNYVDLP
RLNLSRVLFDRVLLNGRARVACALRVLPQLKKSSLVFFHDFFLRPAHYAA
VLPFYEEVGRVLAHGSVHGYTDEPMGLLVLRPREQYLTSDVSVSRINAIY
AQYEEQAPSEASTQLQTAHEHGLLKSDEGGFDYAAMSAQLSRQSTRVRLL
LDL

spliced messenger RNA

>Gcaud1914.t1 ID=Gcaud1914.t1|Name=Gcaud1914.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=759bp|location=Sequence derived from alignment at NODE_1565_length_9721_cov_4.172897:4297..5055- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGCCCGGAGGCGCAGCTGCTGCTGTCGTATCTGCGCGCGTCCGA
CGTGTACCTCGAATTCGGCGCCAGTGGCACCACGCTCGCCGTGCCGCCGC
TCGTGGCCGCCGCGTTCTCCGTCGAACATGACGTGCACGTTTGTCGTGGT
ATCAACGCCGAAATGCGCCGTCACCCGCGGCTCGCCGCCTCTTTGCGCGC
GTTCTGCGTGCGCGTGGAGACGAAGCATGCGGGCTGGGGCACGCTGTCGC
CGTTTGAAGAGGGCTCTTACGCGGCGTTCCAGAACTATGTGGACCTGCCG
CGGCTGAACTTGTCGCGCGTGCTGTTTGATCGCGTGCTGCTGAATGGACG
CGCGAGAGTGGCTTGTGCGTTGCGCGTGTTGCCGCAGCTGAAAAAGAGTA
GTTTGGTGTTTTTTCATGACTTCTTTCTGAGACCGGCGCATTATGCGGCG
GTGCTGCCGTTTTACGAGGAGGTTGGTAGGGTGCTTGCGCATGGTAGCGT
TCACGGCTACACAGATGAGCCCATGGGCTTGCTCGTGCTGCGACCTCGCG
AACAGTATCTCACTTCGGACGTGTCCGTGTCTCGTATCAACGCCATCTAC
GCGCAGTACGAGGAACAAGCACCCAGCGAAGCGTCCACACAACTGCAAAC
TGCGCACGAGCACGGGCTGTTGAAAAGCGATGAAGGCGGCTTTGATTATG
CGGCGATGAGCGCGCAGCTGTCGCGACAGAGCACGCGCGTGCGACTGCTG
TTGGACTTG

protein sequence of Gcaud1914.t1

>Gcaud1914.t1 ID=Gcaud1914.t1|Name=Gcaud1914.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=253bp
MRRPEAQLLLSYLRASDVYLEFGASGTTLAVPPLVAAAFSVEHDVHVCRG
INAEMRRHPRLAASLRAFCVRVETKHAGWGTLSPFEEGSYAAFQNYVDLP
RLNLSRVLFDRVLLNGRARVACALRVLPQLKKSSLVFFHDFFLRPAHYAA
VLPFYEEVGRVLAHGSVHGYTDEPMGLLVLRPREQYLTSDVSVSRINAIY
AQYEEQAPSEASTQLQTAHEHGLLKSDEGGFDYAAMSAQLSRQSTRVRLL
LDL

mRNA from alignment at NODE_1565_length_9721_cov_4.172897:4297..5055-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1914.t1 ID=Gcaud1914.t1|Name=Gcaud1914.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=759bp|location=Sequence derived from alignment at NODE_1565_length_9721_cov_4.172897:4297..5055- (Gracilaria caudata M_176_S67 male)
ATGCGCCGCCCGGAGGCGCAGCTGCTGCTGTCGTATCTGCGCGCGTCCGA
CGTGTACCTCGAATTCGGCGCCAGTGGCACCACGCTCGCCGTGCCGCCGC
TCGTGGCCGCCGCGTTCTCCGTCGAACATGACGTGCACGTTTGTCGTGGT
ATCAACGCCGAAATGCGCCGTCACCCGCGGCTCGCCGCCTCTTTGCGCGC
GTTCTGCGTGCGCGTGGAGACGAAGCATGCGGGCTGGGGCACGCTGTCGC
CGTTTGAAGAGGGCTCTTACGCGGCGTTCCAGAACTATGTGGACCTGCCG
CGGCTGAACTTGTCGCGCGTGCTGTTTGATCGCGTGCTGCTGAATGGACG
CGCGAGAGTGGCTTGTGCGTTGCGCGTGTTGCCGCAGCTGAAAAAGAGTA
GTTTGGTGTTTTTTCATGACTTCTTTCTGAGACCGGCGCATTATGCGGCG
GTGCTGCCGTTTTACGAGGAGGTTGGTAGGGTGCTTGCGCATGGTAGCGT
TCACGGCTACACAGATGAGCCCATGGGCTTGCTCGTGCTGCGACCTCGCG
AACAGTATCTCACTTCGGACGTGTCCGTGTCTCGTATCAACGCCATCTAC
GCGCAGTACGAGGAACAAGCACCCAGCGAAGCGTCCACACAACTGCAAAC
TGCGCACGAGCACGGGCTGTTGAAAAGCGATGAAGGCGGCTTTGATTATG
CGGCGATGAGCGCGCAGCTGTCGCGACAGAGCACGCGCGTGCGACTGCTG
TTGGACTTG

Coding sequence (CDS) from alignment at NODE_1565_length_9721_cov_4.172897:4297..5055-

>Gcaud1914.t1 ID=Gcaud1914.t1|Name=Gcaud1914.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=759bp|location=Sequence derived from alignment at NODE_1565_length_9721_cov_4.172897:4297..5055- (Gracilaria caudata M_176_S67 male)
ATGCGCCGCCCGGAGGCGCAGCTGCTGCTGTCGTATCTGCGCGCGTCCGA
CGTGTACCTCGAATTCGGCGCCAGTGGCACCACGCTCGCCGTGCCGCCGC
TCGTGGCCGCCGCGTTCTCCGTCGAACATGACGTGCACGTTTGTCGTGGT
ATCAACGCCGAAATGCGCCGTCACCCGCGGCTCGCCGCCTCTTTGCGCGC
GTTCTGCGTGCGCGTGGAGACGAAGCATGCGGGCTGGGGCACGCTGTCGC
CGTTTGAAGAGGGCTCTTACGCGGCGTTCCAGAACTATGTGGACCTGCCG
CGGCTGAACTTGTCGCGCGTGCTGTTTGATCGCGTGCTGCTGAATGGACG
CGCGAGAGTGGCTTGTGCGTTGCGCGTGTTGCCGCAGCTGAAAAAGAGTA
GTTTGGTGTTTTTTCATGACTTCTTTCTGAGACCGGCGCATTATGCGGCG
GTGCTGCCGTTTTACGAGGAGGTTGGTAGGGTGCTTGCGCATGGTAGCGT
TCACGGCTACACAGATGAGCCCATGGGCTTGCTCGTGCTGCGACCTCGCG
AACAGTATCTCACTTCGGACGTGTCCGTGTCTCGTATCAACGCCATCTAC
GCGCAGTACGAGGAACAAGCACCCAGCGAAGCGTCCACACAACTGCAAAC
TGCGCACGAGCACGGGCTGTTGAAAAGCGATGAAGGCGGCTTTGATTATG
CGGCGATGAGCGCGCAGCTGTCGCGACAGAGCACGCGCGTGCGACTGCTG
TTGGACTTG