Gcaud1913.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1913.t1
Unique Name	Gcaud1913.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	454

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_927_length_16063_cov_4.587278	contig	NODE_927_length_16063_cov_4.587278:12341..13702 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	264402.Cagra.2240s0024.1.p
Preferred name	PRR7
PFAMs	CCT,Response_reg
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12129
KEGG Pathway	ko04712,map04712
GOs	GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006355,GO:0007154,GO:0007165,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010017,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0048511,GO:0048519,GO:0048523,GO:0048579,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048586,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0080090,GO:0097159,GO:0104004,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000026,GO:2000028,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141
Evalue	3.05e-06
EggNOG OGs	COG5641@1\|root,KOG1601@2759\|Eukaryota,37J2W@33090\|Viridiplantae,3G8UI@35493\|Streptophyta,3HXNJ@3699\|Brassicales
Description	Two-component response
COG category	K
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1913	Gcaud1913	Gracilaria caudata M_176_S67 male	gene	NODE_927_length_16063_cov_4.587278 12341..13702 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1913.t1.stop1	Gcaud1913.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_927_length_16063_cov_4.587278 12341..12343 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1913.t1.CDS1	Gcaud1913.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_927_length_16063_cov_4.587278 12341..13702 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1913.t1.exon1	Gcaud1913.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_927_length_16063_cov_4.587278 12341..13702 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1913.t1.start1	Gcaud1913.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_927_length_16063_cov_4.587278 13700..13702 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1913.t1	Gcaud1913.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_927_length_16063_cov_4.587278 12341..13702 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_927_length_16063_cov_4.587278:12341..13702-
coding sequence from alignment at NODE_927_length_16063_cov_4.587278:12341..13702-

mRNA sequence

>Gcaud1913.t1 ID=Gcaud1913.t1|Name=Gcaud1913.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=454bp
MEFLQSPDLARGHWSAATPTRALRTTLTPAVPGASPTPLHSAAVATSSAP
PALTPAALGAAPDATPKGPFSATPFMSQLDRAGIKSSFQSLFSPHPESAF
ATPALLSRKPASGLTPFLNATTTPGLVPPSPSLLPSFSPGPAQNAVLPSP
NASDPMQRTPFLAAAAREAVRREFMNMPSYVAPGPSPHHHSSADAERKDP
EKDNSPQYTMQVVANTGAQVESTPPRKNNTEPSHTESTHPSAGPSASSSP
SDAKVPDHHDRNSANTKNKSPEQSSTDQRAPAQKNGQHPPQPQMHPFFIP
HAQPPPGMMVLGQHAPMMMAPPPGMFPPPGMMVFPGGQPMMPQPGMMMHP
PQTLVPPRVVPAKQESPSERKARVENEKQELIREFKKKTREAALVRFRQK
RRERRFGKLIRYDCRKKLADARPRVKGRFVRLKTTDDDDESESAQVVPNL
ETR*

spliced messenger RNA

>Gcaud1913.t1 ID=Gcaud1913.t1|Name=Gcaud1913.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:12341..13702- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTTTTGCAGTCGCCCGATCTCGCCCGCGGTCACTGGAGCGCTGC
CACACCCACGCGCGCACTACGTACCACGCTTACGCCTGCTGTTCCAGGCG
CGTCGCCCACGCCTTTGCATTCCGCAGCCGTTGCCACGTCGTCGGCTCCG
CCCGCGTTGACCCCCGCTGCCTTGGGGGCTGCTCCAGATGCCACACCAAA
AGGGCCGTTTTCGGCCACTCCGTTCATGTCACAGCTCGACAGAGCCGGGA
TAAAGAGCTCCTTTCAGAGCCTGTTCAGCCCACACCCGGAGAGTGCTTTC
GCTACACCTGCCTTGCTTTCGCGAAAGCCTGCTTCCGGTCTCACCCCGTT
TCTGAACGCTACAACCACGCCAGGCCTGGTTCCACCTTCTCCGTCGTTGC
TGCCCTCCTTCTCCCCAGGCCCAGCGCAAAATGCCGTCCTGCCGTCGCCA
AATGCATCTGATCCGATGCAGAGGACGCCTTTCCTCGCAGCCGCCGCTCG
GGAAGCAGTGCGAAGGGAATTCATGAATATGCCGAGTTATGTCGCACCAG
GCCCGTCGCCTCATCACCATTCAAGTGCTGATGCAGAGCGAAAGGATCCC
GAGAAAGATAATTCTCCGCAGTACACTATGCAAGTTGTTGCAAACACTGG
CGCACAGGTGGAGTCTACCCCACCCAGAAAGAACAACACGGAGCCGTCTC
ATACGGAGAGCACACATCCTAGTGCTGGCCCGAGTGCTTCGTCTAGTCCA
AGCGACGCCAAAGTTCCCGATCATCATGACAGAAACTCTGCAAATACGAA
GAATAAGTCACCGGAGCAGTCGAGCACCGATCAGAGGGCGCCAGCGCAGA
AGAACGGGCAGCATCCACCACAACCACAGATGCACCCGTTCTTCATTCCT
CACGCGCAACCACCTCCCGGTATGATGGTCCTTGGACAGCATGCACCGAT
GATGATGGCCCCACCCCCTGGCATGTTCCCCCCTCCTGGTATGATGGTTT
TCCCCGGTGGTCAGCCAATGATGCCACAACCAGGCATGATGATGCACCCT
CCTCAGACATTAGTACCGCCGAGAGTTGTGCCTGCGAAGCAGGAATCTCC
TTCCGAGAGGAAAGCACGTGTGGAGAATGAGAAGCAGGAGCTGATTAGAG
AATTCAAGAAGAAAACCAGAGAGGCTGCACTTGTGCGGTTTAGACAGAAG
AGGCGAGAAAGGCGATTCGGCAAATTAATCAGATACGATTGCCGGAAGAA
GTTAGCTGACGCGCGACCGAGAGTCAAGGGTCGATTTGTGAGATTAAAGA
CCACAGATGATGATGACGAATCCGAATCGGCTCAAGTCGTTCCAAACTTG
GAGACACGATGA

protein sequence of Gcaud1913.t1

>Gcaud1913.t1 ID=Gcaud1913.t1|Name=Gcaud1913.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=454bp
MEFLQSPDLARGHWSAATPTRALRTTLTPAVPGASPTPLHSAAVATSSAP
PALTPAALGAAPDATPKGPFSATPFMSQLDRAGIKSSFQSLFSPHPESAF
ATPALLSRKPASGLTPFLNATTTPGLVPPSPSLLPSFSPGPAQNAVLPSP
NASDPMQRTPFLAAAAREAVRREFMNMPSYVAPGPSPHHHSSADAERKDP
EKDNSPQYTMQVVANTGAQVESTPPRKNNTEPSHTESTHPSAGPSASSSP
SDAKVPDHHDRNSANTKNKSPEQSSTDQRAPAQKNGQHPPQPQMHPFFIP
HAQPPPGMMVLGQHAPMMMAPPPGMFPPPGMMVFPGGQPMMPQPGMMMHP
PQTLVPPRVVPAKQESPSERKARVENEKQELIREFKKKTREAALVRFRQK
RRERRFGKLIRYDCRKKLADARPRVKGRFVRLKTTDDDDESESAQVVPNL
ETR*

mRNA from alignment at NODE_927_length_16063_cov_4.587278:12341..13702-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1913.t1 ID=Gcaud1913.t1|Name=Gcaud1913.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:12341..13702- (Gracilaria caudata M_176_S67 male)
ATGGAGTTTTTGCAGTCGCCCGATCTCGCCCGCGGTCACTGGAGCGCTGC
CACACCCACGCGCGCACTACGTACCACGCTTACGCCTGCTGTTCCAGGCG
CGTCGCCCACGCCTTTGCATTCCGCAGCCGTTGCCACGTCGTCGGCTCCG
CCCGCGTTGACCCCCGCTGCCTTGGGGGCTGCTCCAGATGCCACACCAAA
AGGGCCGTTTTCGGCCACTCCGTTCATGTCACAGCTCGACAGAGCCGGGA
TAAAGAGCTCCTTTCAGAGCCTGTTCAGCCCACACCCGGAGAGTGCTTTC
GCTACACCTGCCTTGCTTTCGCGAAAGCCTGCTTCCGGTCTCACCCCGTT
TCTGAACGCTACAACCACGCCAGGCCTGGTTCCACCTTCTCCGTCGTTGC
TGCCCTCCTTCTCCCCAGGCCCAGCGCAAAATGCCGTCCTGCCGTCGCCA
AATGCATCTGATCCGATGCAGAGGACGCCTTTCCTCGCAGCCGCCGCTCG
GGAAGCAGTGCGAAGGGAATTCATGAATATGCCGAGTTATGTCGCACCAG
GCCCGTCGCCTCATCACCATTCAAGTGCTGATGCAGAGCGAAAGGATCCC
GAGAAAGATAATTCTCCGCAGTACACTATGCAAGTTGTTGCAAACACTGG
CGCACAGGTGGAGTCTACCCCACCCAGAAAGAACAACACGGAGCCGTCTC
ATACGGAGAGCACACATCCTAGTGCTGGCCCGAGTGCTTCGTCTAGTCCA
AGCGACGCCAAAGTTCCCGATCATCATGACAGAAACTCTGCAAATACGAA
GAATAAGTCACCGGAGCAGTCGAGCACCGATCAGAGGGCGCCAGCGCAGA
AGAACGGGCAGCATCCACCACAACCACAGATGCACCCGTTCTTCATTCCT
CACGCGCAACCACCTCCCGGTATGATGGTCCTTGGACAGCATGCACCGAT
GATGATGGCCCCACCCCCTGGCATGTTCCCCCCTCCTGGTATGATGGTTT
TCCCCGGTGGTCAGCCAATGATGCCACAACCAGGCATGATGATGCACCCT
CCTCAGACATTAGTACCGCCGAGAGTTGTGCCTGCGAAGCAGGAATCTCC
TTCCGAGAGGAAAGCACGTGTGGAGAATGAGAAGCAGGAGCTGATTAGAG
AATTCAAGAAGAAAACCAGAGAGGCTGCACTTGTGCGGTTTAGACAGAAG
AGGCGAGAAAGGCGATTCGGCAAATTAATCAGATACGATTGCCGGAAGAA
GTTAGCTGACGCGCGACCGAGAGTCAAGGGTCGATTTGTGAGATTAAAGA
CCACAGATGATGATGACGAATCCGAATCGGCTCAAGTCGTTCCAAACTTG
GAGACACGATGA

Coding sequence (CDS) from alignment at NODE_927_length_16063_cov_4.587278:12341..13702-

>Gcaud1913.t1 ID=Gcaud1913.t1|Name=Gcaud1913.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1362bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:12341..13702- (Gracilaria caudata M_176_S67 male)
ATGGAGTTTTTGCAGTCGCCCGATCTCGCCCGCGGTCACTGGAGCGCTGC
CACACCCACGCGCGCACTACGTACCACGCTTACGCCTGCTGTTCCAGGCG
CGTCGCCCACGCCTTTGCATTCCGCAGCCGTTGCCACGTCGTCGGCTCCG
CCCGCGTTGACCCCCGCTGCCTTGGGGGCTGCTCCAGATGCCACACCAAA
AGGGCCGTTTTCGGCCACTCCGTTCATGTCACAGCTCGACAGAGCCGGGA
TAAAGAGCTCCTTTCAGAGCCTGTTCAGCCCACACCCGGAGAGTGCTTTC
GCTACACCTGCCTTGCTTTCGCGAAAGCCTGCTTCCGGTCTCACCCCGTT
TCTGAACGCTACAACCACGCCAGGCCTGGTTCCACCTTCTCCGTCGTTGC
TGCCCTCCTTCTCCCCAGGCCCAGCGCAAAATGCCGTCCTGCCGTCGCCA
AATGCATCTGATCCGATGCAGAGGACGCCTTTCCTCGCAGCCGCCGCTCG
GGAAGCAGTGCGAAGGGAATTCATGAATATGCCGAGTTATGTCGCACCAG
GCCCGTCGCCTCATCACCATTCAAGTGCTGATGCAGAGCGAAAGGATCCC
GAGAAAGATAATTCTCCGCAGTACACTATGCAAGTTGTTGCAAACACTGG
CGCACAGGTGGAGTCTACCCCACCCAGAAAGAACAACACGGAGCCGTCTC
ATACGGAGAGCACACATCCTAGTGCTGGCCCGAGTGCTTCGTCTAGTCCA
AGCGACGCCAAAGTTCCCGATCATCATGACAGAAACTCTGCAAATACGAA
GAATAAGTCACCGGAGCAGTCGAGCACCGATCAGAGGGCGCCAGCGCAGA
AGAACGGGCAGCATCCACCACAACCACAGATGCACCCGTTCTTCATTCCT
CACGCGCAACCACCTCCCGGTATGATGGTCCTTGGACAGCATGCACCGAT
GATGATGGCCCCACCCCCTGGCATGTTCCCCCCTCCTGGTATGATGGTTT
TCCCCGGTGGTCAGCCAATGATGCCACAACCAGGCATGATGATGCACCCT
CCTCAGACATTAGTACCGCCGAGAGTTGTGCCTGCGAAGCAGGAATCTCC
TTCCGAGAGGAAAGCACGTGTGGAGAATGAGAAGCAGGAGCTGATTAGAG
AATTCAAGAAGAAAACCAGAGAGGCTGCACTTGTGCGGTTTAGACAGAAG
AGGCGAGAAAGGCGATTCGGCAAATTAATCAGATACGATTGCCGGAAGAA
GTTAGCTGACGCGCGACCGAGAGTCAAGGGTCGATTTGTGAGATTAAAGA
CCACAGATGATGATGACGAATCCGAATCGGCTCAAGTCGTTCCAAACTTG
GAGACACGATGA