Gcaud1906.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1906.t1
Unique Name	Gcaud1906.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	630

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1086_length_13996_cov_4.532255	contig	NODE_1086_length_13996_cov_4.532255:10018..12372 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1906	Gcaud1906	Gracilaria caudata M_176_S67 male	gene	NODE_1086_length_13996_cov_4.532255 10018..12372 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1906.t1	Gcaud1906.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1086_length_13996_cov_4.532255 10018..12372 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1906.t1.start1	Gcaud1906.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1086_length_13996_cov_4.532255 10018..10020 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1906.t1.CDS1	Gcaud1906.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1086_length_13996_cov_4.532255 10018..10133 +
Gcaud1906.t1.CDS2	Gcaud1906.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1086_length_13996_cov_4.532255 10432..10571 +
Gcaud1906.t1.CDS3	Gcaud1906.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_1086_length_13996_cov_4.532255 10680..10708 +
Gcaud1906.t1.CDS4	Gcaud1906.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_1086_length_13996_cov_4.532255 10768..12372 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1906.t1.exon1	Gcaud1906.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1086_length_13996_cov_4.532255 10018..10133 +
Gcaud1906.t1.exon2	Gcaud1906.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1086_length_13996_cov_4.532255 10432..10571 +
Gcaud1906.t1.exon3	Gcaud1906.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_1086_length_13996_cov_4.532255 10680..10708 +
Gcaud1906.t1.exon4	Gcaud1906.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_1086_length_13996_cov_4.532255 10768..12372 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1906.t1.intron1	Gcaud1906.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1086_length_13996_cov_4.532255 10134..10431 +
Gcaud1906.t1.intron2	Gcaud1906.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_1086_length_13996_cov_4.532255 10572..10679 +
Gcaud1906.t1.intron3	Gcaud1906.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_1086_length_13996_cov_4.532255 10709..10767 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1906.t1.stop1	Gcaud1906.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1086_length_13996_cov_4.532255 12370..12372 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1086_length_13996_cov_4.532255:10018..12372+
coding sequence from alignment at NODE_1086_length_13996_cov_4.532255:10018..12372+

mRNA sequence

>Gcaud1906.t1 ID=Gcaud1906.t1|Name=Gcaud1906.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=630bp
MSALEYILESYDNRLPTKGNFRTNSRDETAIALRGVKCIVASDPLVVDLV
ASSSPPLFVFSEYFVVRPRYSLVSAETLLSSTQDKDFGSHCVTSCHEANI
ATTAGFPGVYPCAALATHSPTTAQAISRGNPGKDNTELVDGENGRVLRPD
SITAGLPDVGQRFEEVAEVEKIYGGDDVGNTGPPTEGGREISEVPFDPAS
LPDDDYLDLMFGAMPKEDRVRLSTGQTQASLLRELLPDLPATDIPGHGPQ
AGGQAVRDNETVPMSISDDDYMDQMFVPLPPEDKLRLSANQTRESLFREL
LGPDIVADAPSVCEGSPHEDVPSKSPAGNPNAAGQYGPKMANNETREAYG
AGVCAQVPHLMVCNEIPPQSQGGIPHRQDAEGEVARVSKAPHQQSQDNPP
GPVKRAKRKRSSGKRVAKSAQGGQPRPKKRRRTRVEDMDPADVHVCDYEG
CGKRFARRYNLTVHQRAHRNEYPFRCDVPDCGKPFMWHSSLSRHLRVHDK
GGRSGGRKQRRKARRTQAPSKNLGEHPSDGAQNFPGVSQKQEVHKLETIE
ALVSTVSFDQTIMVLLGGKHPKIEKDVDVKAHLEDRCRQFAYRQQQLVGM
WNSPIVMSREIFLRMCTEILGADRMETDA*

spliced messenger RNA

>Gcaud1906.t1 ID=Gcaud1906.t1|Name=Gcaud1906.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1890bp|location=Sequence derived from alignment at NODE_1086_length_13996_cov_4.532255:10018..12372+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCACTTGAATACATTCTCGAAAGCTATGATAACCGCCTTCCAAC
CAAAGGTAACTTCCGCACCAATTCTCGTGACGAAACAGCTATTGCGTTGA
GAGGAGTAAAGTGCATTGTCGCTAGTGATCCGCTTGTTGTCGACTTAGTC
GCCTCTTCATCTCCACCTCTCTTCGTCTTCTCAGAGTATTTTGTGGTACG
GCCTCGATACTCTCTTGTGAGTGCGGAAACTCTGCTCTCGTCGACACAGG
ACAAAGATTTTGGTTCACATTGTGTAACTTCTTGTCATGAGGCGAATATC
GCCACCACGGCGGGGTTCCCCGGAGTATATCCTTGTGCTGCCTTGGCCAC
TCATTCCCCAACAACGGCACAAGCGATATCTCGTGGAAATCCTGGCAAGG
ACAACACGGAGCTGGTCGACGGTGAGAATGGACGTGTTCTCAGGCCTGAT
TCTATCACGGCAGGATTACCGGACGTGGGGCAGCGCTTCGAGGAGGTTGC
CGAGGTGGAGAAGATATATGGTGGGGATGACGTTGGAAATACCGGACCGC
CCACTGAGGGGGGGAGGGAGATAAGCGAGGTGCCGTTTGATCCCGCAAGT
CTGCCCGATGACGACTATCTGGACTTGATGTTTGGGGCCATGCCGAAGGA
GGATCGAGTTCGGTTGTCCACCGGCCAAACGCAGGCAAGCCTCCTTCGCG
AGCTACTGCCAGACCTCCCGGCAACTGACATCCCCGGACACGGGCCTCAA
GCTGGTGGGCAGGCTGTCAGAGATAACGAGACAGTCCCCATGTCCATATC
AGATGATGATTACATGGATCAGATGTTCGTGCCTCTTCCCCCCGAGGACA
AATTGAGGCTTTCAGCAAACCAAACGCGTGAGAGTTTGTTTAGAGAACTC
TTGGGGCCGGATATCGTTGCCGATGCCCCCAGCGTCTGTGAAGGAAGTCC
GCACGAAGATGTTCCTTCAAAGTCTCCAGCGGGTAACCCCAATGCCGCCG
GACAATATGGTCCGAAGATGGCTAACAACGAGACTCGGGAAGCATATGGT
GCGGGGGTATGTGCCCAAGTTCCGCACCTGATGGTGTGTAATGAGATTCC
ACCCCAGTCTCAAGGTGGAATACCCCACCGCCAGGATGCTGAAGGGGAAG
TCGCAAGGGTGTCAAAGGCTCCACATCAACAAAGCCAAGACAATCCCCCC
GGCCCAGTGAAGCGCGCCAAGCGCAAAAGATCTTCTGGGAAGCGAGTCGC
GAAGTCTGCACAAGGAGGCCAGCCAAGGCCGAAGAAGAGGCGACGAACTC
GGGTCGAGGACATGGACCCGGCCGATGTGCATGTGTGCGACTATGAAGGT
TGTGGGAAACGGTTTGCCAGGCGTTATAACCTCACGGTACATCAAAGGGC
ACATCGTAACGAATACCCGTTCAGGTGCGATGTGCCTGATTGCGGAAAGC
CATTCATGTGGCACTCAAGCCTGTCCCGCCACCTCCGCGTGCATGACAAA
GGGGGAAGATCCGGAGGGCGTAAGCAACGCCGAAAGGCTAGACGGACACA
GGCCCCCTCAAAGAACCTGGGCGAGCATCCCTCTGACGGCGCGCAAAACT
TCCCTGGCGTCAGCCAGAAGCAAGAGGTCCATAAGCTCGAGACCATTGAA
GCATTGGTTAGTACTGTCAGTTTTGATCAAACAATTATGGTGCTCTTGGG
AGGGAAACACCCTAAAATCGAAAAGGATGTCGATGTGAAAGCTCACTTGG
AAGACCGCTGCCGCCAGTTCGCTTATCGTCAGCAGCAATTGGTCGGAATG
TGGAACTCACCCATCGTGATGAGCAGGGAAATATTTTTGCGGATGTGTAC
TGAAATTCTTGGGGCCGATCGTATGGAAACAGACGCATGA

protein sequence of Gcaud1906.t1

>Gcaud1906.t1 ID=Gcaud1906.t1|Name=Gcaud1906.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=630bp
MSALEYILESYDNRLPTKGNFRTNSRDETAIALRGVKCIVASDPLVVDLV
ASSSPPLFVFSEYFVVRPRYSLVSAETLLSSTQDKDFGSHCVTSCHEANI
ATTAGFPGVYPCAALATHSPTTAQAISRGNPGKDNTELVDGENGRVLRPD
SITAGLPDVGQRFEEVAEVEKIYGGDDVGNTGPPTEGGREISEVPFDPAS
LPDDDYLDLMFGAMPKEDRVRLSTGQTQASLLRELLPDLPATDIPGHGPQ
AGGQAVRDNETVPMSISDDDYMDQMFVPLPPEDKLRLSANQTRESLFREL
LGPDIVADAPSVCEGSPHEDVPSKSPAGNPNAAGQYGPKMANNETREAYG
AGVCAQVPHLMVCNEIPPQSQGGIPHRQDAEGEVARVSKAPHQQSQDNPP
GPVKRAKRKRSSGKRVAKSAQGGQPRPKKRRRTRVEDMDPADVHVCDYEG
CGKRFARRYNLTVHQRAHRNEYPFRCDVPDCGKPFMWHSSLSRHLRVHDK
GGRSGGRKQRRKARRTQAPSKNLGEHPSDGAQNFPGVSQKQEVHKLETIE
ALVSTVSFDQTIMVLLGGKHPKIEKDVDVKAHLEDRCRQFAYRQQQLVGM
WNSPIVMSREIFLRMCTEILGADRMETDA*

mRNA from alignment at NODE_1086_length_13996_cov_4.532255:10018..12372+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1906.t1 ID=Gcaud1906.t1|Name=Gcaud1906.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2355bp|location=Sequence derived from alignment at NODE_1086_length_13996_cov_4.532255:10018..12372+ (Gracilaria caudata M_176_S67 male)
ATGAGTGCACTTGAATACATTCTCGAAAGCTATGATAACCGCCTTCCAAC
CAAAGGTAACTTCCGCACCAATTCTCGTGACGAAACAGCTATTGCGTTGA
GAGGAGTAAAGTGCATGTTCTCTAGTGAATGCAGTTCCTGACGGGTACAA
TTTTGGGAGAGCAACGGAGAGCCATGGCGATGAGGTTGGAGACAAAGTGC
AAACCCGCAGAAGTCACGTTTCACCTCTCACACGTACACTTCTCGACGGT
GGGTGATCAAAGGCTACATGATATTCGCAGCTTCCTCAGAGCAAGTGAGA
GAGGCATAGCATAGTATCAGCATTTCGATTCACCTGTGATTATTGTTTCA
AGATGGGAGAGTGTTGCATTCACCGGCTGCCCTGGCAGTATAAATACATC
GGTTGTCGCCGTAGTGTCGCTAGTGATCCGCTTGTTGTCGACTTAGTCGC
CTCTTCATCTCCACCTCTCTTCGTCTTCTCAGAGTATTTTGTGGTACGGC
CTCGATACTCTCTTGTGAGTGCGGAAACTCTGCTCTCGTCGACACAGGAC
AAAGGTTCGTTTACATTATTTACCTACCAACTGAATCCGGTCCTCCATTA
CCACTTCTGCTTTTCGTTCCTTCTCCGATATTAACCTCAAGTTTCATGTT
CACTTCATATAGATTTTGGTTCACATTGTGTAACTTCTTGTGTAAGTTCG
AGGGTGTTTAAGACTTGATAATTAACAACATGCTTGGGGGATATGAACAG
CATGAGGCGAATATCGCCACCACGGCGGGGTTCCCCGGAGTATATCCTTG
TGCTGCCTTGGCCACTCATTCCCCAACAACGGCACAAGCGATATCTCGTG
GAAATCCTGGCAAGGACAACACGGAGCTGGTCGACGGTGAGAATGGACGT
GTTCTCAGGCCTGATTCTATCACGGCAGGATTACCGGACGTGGGGCAGCG
CTTCGAGGAGGTTGCCGAGGTGGAGAAGATATATGGTGGGGATGACGTTG
GAAATACCGGACCGCCCACTGAGGGGGGGAGGGAGATAAGCGAGGTGCCG
TTTGATCCCGCAAGTCTGCCCGATGACGACTATCTGGACTTGATGTTTGG
GGCCATGCCGAAGGAGGATCGAGTTCGGTTGTCCACCGGCCAAACGCAGG
CAAGCCTCCTTCGCGAGCTACTGCCAGACCTCCCGGCAACTGACATCCCC
GGACACGGGCCTCAAGCTGGTGGGCAGGCTGTCAGAGATAACGAGACAGT
CCCCATGTCCATATCAGATGATGATTACATGGATCAGATGTTCGTGCCTC
TTCCCCCCGAGGACAAATTGAGGCTTTCAGCAAACCAAACGCGTGAGAGT
TTGTTTAGAGAACTCTTGGGGCCGGATATCGTTGCCGATGCCCCCAGCGT
CTGTGAAGGAAGTCCGCACGAAGATGTTCCTTCAAAGTCTCCAGCGGGTA
ACCCCAATGCCGCCGGACAATATGGTCCGAAGATGGCTAACAACGAGACT
CGGGAAGCATATGGTGCGGGGGTATGTGCCCAAGTTCCGCACCTGATGGT
GTGTAATGAGATTCCACCCCAGTCTCAAGGTGGAATACCCCACCGCCAGG
ATGCTGAAGGGGAAGTCGCAAGGGTGTCAAAGGCTCCACATCAACAAAGC
CAAGACAATCCCCCCGGCCCAGTGAAGCGCGCCAAGCGCAAAAGATCTTC
TGGGAAGCGAGTCGCGAAGTCTGCACAAGGAGGCCAGCCAAGGCCGAAGA
AGAGGCGACGAACTCGGGTCGAGGACATGGACCCGGCCGATGTGCATGTG
TGCGACTATGAAGGTTGTGGGAAACGGTTTGCCAGGCGTTATAACCTCAC
GGTACATCAAAGGGCACATCGTAACGAATACCCGTTCAGGTGCGATGTGC
CTGATTGCGGAAAGCCATTCATGTGGCACTCAAGCCTGTCCCGCCACCTC
CGCGTGCATGACAAAGGGGGAAGATCCGGAGGGCGTAAGCAACGCCGAAA
GGCTAGACGGACACAGGCCCCCTCAAAGAACCTGGGCGAGCATCCCTCTG
ACGGCGCGCAAAACTTCCCTGGCGTCAGCCAGAAGCAAGAGGTCCATAAG
CTCGAGACCATTGAAGCATTGGTTAGTACTGTCAGTTTTGATCAAACAAT
TATGGTGCTCTTGGGAGGGAAACACCCTAAAATCGAAAAGGATGTCGATG
TGAAAGCTCACTTGGAAGACCGCTGCCGCCAGTTCGCTTATCGTCAGCAG
CAATTGGTCGGAATGTGGAACTCACCCATCGTGATGAGCAGGGAAATATT
TTTGCGGATGTGTACTGAAATTCTTGGGGCCGATCGTATGGAAACAGACG
CATGA

Coding sequence (CDS) from alignment at NODE_1086_length_13996_cov_4.532255:10018..12372+

>Gcaud1906.t1 ID=Gcaud1906.t1|Name=Gcaud1906.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1890bp|location=Sequence derived from alignment at NODE_1086_length_13996_cov_4.532255:10018..12372+ (Gracilaria caudata M_176_S67 male)
ATGAGTGCACTTGAATACATTCTCGAAAGCTATGATAACCGCCTTCCAAC
CAAAGGTAACTTCCGCACCAATTCTCGTGACGAAACAGCTATTGCGTTGA
GAGGAGTAAAGTGCATTGTCGCTAGTGATCCGCTTGTTGTCGACTTAGTC
GCCTCTTCATCTCCACCTCTCTTCGTCTTCTCAGAGTATTTTGTGGTACG
GCCTCGATACTCTCTTGTGAGTGCGGAAACTCTGCTCTCGTCGACACAGG
ACAAAGATTTTGGTTCACATTGTGTAACTTCTTGTCATGAGGCGAATATC
GCCACCACGGCGGGGTTCCCCGGAGTATATCCTTGTGCTGCCTTGGCCAC
TCATTCCCCAACAACGGCACAAGCGATATCTCGTGGAAATCCTGGCAAGG
ACAACACGGAGCTGGTCGACGGTGAGAATGGACGTGTTCTCAGGCCTGAT
TCTATCACGGCAGGATTACCGGACGTGGGGCAGCGCTTCGAGGAGGTTGC
CGAGGTGGAGAAGATATATGGTGGGGATGACGTTGGAAATACCGGACCGC
CCACTGAGGGGGGGAGGGAGATAAGCGAGGTGCCGTTTGATCCCGCAAGT
CTGCCCGATGACGACTATCTGGACTTGATGTTTGGGGCCATGCCGAAGGA
GGATCGAGTTCGGTTGTCCACCGGCCAAACGCAGGCAAGCCTCCTTCGCG
AGCTACTGCCAGACCTCCCGGCAACTGACATCCCCGGACACGGGCCTCAA
GCTGGTGGGCAGGCTGTCAGAGATAACGAGACAGTCCCCATGTCCATATC
AGATGATGATTACATGGATCAGATGTTCGTGCCTCTTCCCCCCGAGGACA
AATTGAGGCTTTCAGCAAACCAAACGCGTGAGAGTTTGTTTAGAGAACTC
TTGGGGCCGGATATCGTTGCCGATGCCCCCAGCGTCTGTGAAGGAAGTCC
GCACGAAGATGTTCCTTCAAAGTCTCCAGCGGGTAACCCCAATGCCGCCG
GACAATATGGTCCGAAGATGGCTAACAACGAGACTCGGGAAGCATATGGT
GCGGGGGTATGTGCCCAAGTTCCGCACCTGATGGTGTGTAATGAGATTCC
ACCCCAGTCTCAAGGTGGAATACCCCACCGCCAGGATGCTGAAGGGGAAG
TCGCAAGGGTGTCAAAGGCTCCACATCAACAAAGCCAAGACAATCCCCCC
GGCCCAGTGAAGCGCGCCAAGCGCAAAAGATCTTCTGGGAAGCGAGTCGC
GAAGTCTGCACAAGGAGGCCAGCCAAGGCCGAAGAAGAGGCGACGAACTC
GGGTCGAGGACATGGACCCGGCCGATGTGCATGTGTGCGACTATGAAGGT
TGTGGGAAACGGTTTGCCAGGCGTTATAACCTCACGGTACATCAAAGGGC
ACATCGTAACGAATACCCGTTCAGGTGCGATGTGCCTGATTGCGGAAAGC
CATTCATGTGGCACTCAAGCCTGTCCCGCCACCTCCGCGTGCATGACAAA
GGGGGAAGATCCGGAGGGCGTAAGCAACGCCGAAAGGCTAGACGGACACA
GGCCCCCTCAAAGAACCTGGGCGAGCATCCCTCTGACGGCGCGCAAAACT
TCCCTGGCGTCAGCCAGAAGCAAGAGGTCCATAAGCTCGAGACCATTGAA
GCATTGGTTAGTACTGTCAGTTTTGATCAAACAATTATGGTGCTCTTGGG
AGGGAAACACCCTAAAATCGAAAAGGATGTCGATGTGAAAGCTCACTTGG
AAGACCGCTGCCGCCAGTTCGCTTATCGTCAGCAGCAATTGGTCGGAATG
TGGAACTCACCCATCGTGATGAGCAGGGAAATATTTTTGCGGATGTGTAC
TGAAATTCTTGGGGCCGATCGTATGGAAACAGACGCATGA