Gcaud1901.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1901.t1
Unique Name	Gcaud1901.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	341

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_807_length_17687_cov_4.345135	contig	NODE_807_length_17687_cov_4.345135:14817..15919 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1901	Gcaud1901	Gracilaria caudata M_176_S67 male	gene	NODE_807_length_17687_cov_4.345135 14817..15919 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1901.t1	Gcaud1901.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_807_length_17687_cov_4.345135 14817..15919 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1901.t1.start1	Gcaud1901.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_807_length_17687_cov_4.345135 14817..14819 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1901.t1.CDS1	Gcaud1901.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_807_length_17687_cov_4.345135 14817..15805 +
Gcaud1901.t1.CDS2	Gcaud1901.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_807_length_17687_cov_4.345135 15886..15919 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1901.t1.exon1	Gcaud1901.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_807_length_17687_cov_4.345135 14817..15805 +
Gcaud1901.t1.exon2	Gcaud1901.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_807_length_17687_cov_4.345135 15886..15919 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1901.t1.intron1	Gcaud1901.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_807_length_17687_cov_4.345135 15806..15885 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1901.t1.stop1	Gcaud1901.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_807_length_17687_cov_4.345135 15917..15919 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_807_length_17687_cov_4.345135:14817..15919+
coding sequence from alignment at NODE_807_length_17687_cov_4.345135:14817..15919+

mRNA sequence

>Gcaud1901.t1 ID=Gcaud1901.t1|Name=Gcaud1901.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=341bp
MSSSSCDGANSLSESESHSPDSDSEGSFYWVEYVRVLLLNTAGTHAFMCS
ENGRWDLPYFVYNDMDSGDYARCCADFQSMLSIDSRKPLFTALVELLGAE
AALKPRGYVEPKSSDVGFARLLWVEPHTEIQQLPNNCQWKDAQFVSTIKA
DESYDTALHVVIERVNAVLTRDESLFRLLREPRHQMGWHSKVCSWLTALV
ENNGNAVRSEVIQMKVGPSCNTLKVNSSDGWFYLKAPHGDTSEIELTNSI
ATLFPEFTIDMLGVTMEHKAFVTREFQEEEDFDVQDALKTLAALQQASIA
SKDHLIKTGCPVRGPREMLAEVRKWSSDPKVQSASYSHTW*

spliced messenger RNA

>Gcaud1901.t1 ID=Gcaud1901.t1|Name=Gcaud1901.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:14817..15919+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCCTCGTCCTGTGATGGGGCAAATAGCCTAAGCGAATCTGAATC
CCATTCGCCAGATTCTGATTCAGAAGGCTCCTTTTATTGGGTGGAATACG
TGCGCGTTCTGTTATTAAACACCGCCGGAACGCATGCGTTCATGTGTTCT
GAGAATGGACGGTGGGACCTTCCGTACTTTGTTTACAACGACATGGATTC
TGGAGACTACGCTAGATGCTGCGCGGATTTTCAATCTATGCTTTCCATAG
ACTCTAGAAAGCCTCTGTTTACTGCATTAGTTGAACTGCTTGGGGCCGAA
GCTGCTCTTAAACCCCGTGGATATGTTGAACCAAAGAGTTCTGACGTTGG
TTTCGCAAGACTACTGTGGGTTGAACCACACACTGAAATACAACAGCTTC
CGAATAACTGTCAATGGAAAGACGCACAGTTTGTTAGCACCATCAAAGCC
GATGAGAGCTATGACACAGCACTACATGTGGTCATTGAGCGCGTCAATGC
TGTTTTGACGCGAGATGAGTCCTTATTTAGACTGCTTCGGGAACCACGCC
ATCAGATGGGCTGGCATTCAAAAGTATGCAGTTGGTTGACCGCGCTTGTT
GAAAACAATGGCAACGCGGTACGAAGCGAAGTAATCCAAATGAAAGTGGG
TCCGTCGTGCAACACTCTGAAAGTAAACTCATCGGATGGGTGGTTTTACT
TAAAAGCACCGCATGGAGATACTTCTGAAATAGAACTTACAAACTCCATT
GCCACCTTATTTCCAGAGTTCACGATAGACATGTTAGGTGTTACGATGGA
GCACAAAGCATTCGTTACGAGGGAGTTTCAAGAGGAAGAAGACTTTGATG
TACAGGACGCATTGAAAACACTCGCAGCTTTGCAACAAGCCTCAATCGCA
TCAAAAGATCATCTGATAAAGACAGGTTGCCCGGTACGAGGTCCCAGAGA
AATGTTAGCTGAAGTTCGAAAGTGGTCAAGCGATCCGAAAGTTCAATCTG
CCTCTTACTCTCACACATGGTGA

protein sequence of Gcaud1901.t1

>Gcaud1901.t1 ID=Gcaud1901.t1|Name=Gcaud1901.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=341bp
MSSSSCDGANSLSESESHSPDSDSEGSFYWVEYVRVLLLNTAGTHAFMCS
ENGRWDLPYFVYNDMDSGDYARCCADFQSMLSIDSRKPLFTALVELLGAE
AALKPRGYVEPKSSDVGFARLLWVEPHTEIQQLPNNCQWKDAQFVSTIKA
DESYDTALHVVIERVNAVLTRDESLFRLLREPRHQMGWHSKVCSWLTALV
ENNGNAVRSEVIQMKVGPSCNTLKVNSSDGWFYLKAPHGDTSEIELTNSI
ATLFPEFTIDMLGVTMEHKAFVTREFQEEEDFDVQDALKTLAALQQASIA
SKDHLIKTGCPVRGPREMLAEVRKWSSDPKVQSASYSHTW*

mRNA from alignment at NODE_807_length_17687_cov_4.345135:14817..15919+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1901.t1 ID=Gcaud1901.t1|Name=Gcaud1901.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1103bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:14817..15919+ (Gracilaria caudata M_176_S67 male)
ATGTCATCCTCGTCCTGTGATGGGGCAAATAGCCTAAGCGAATCTGAATC
CCATTCGCCAGATTCTGATTCAGAAGGCTCCTTTTATTGGGTGGAATACG
TGCGCGTTCTGTTATTAAACACCGCCGGAACGCATGCGTTCATGTGTTCT
GAGAATGGACGGTGGGACCTTCCGTACTTTGTTTACAACGACATGGATTC
TGGAGACTACGCTAGATGCTGCGCGGATTTTCAATCTATGCTTTCCATAG
ACTCTAGAAAGCCTCTGTTTACTGCATTAGTTGAACTGCTTGGGGCCGAA
GCTGCTCTTAAACCCCGTGGATATGTTGAACCAAAGAGTTCTGACGTTGG
TTTCGCAAGACTACTGTGGGTTGAACCACACACTGAAATACAACAGCTTC
CGAATAACTGTCAATGGAAAGACGCACAGTTTGTTAGCACCATCAAAGCC
GATGAGAGCTATGACACAGCACTACATGTGGTCATTGAGCGCGTCAATGC
TGTTTTGACGCGAGATGAGTCCTTATTTAGACTGCTTCGGGAACCACGCC
ATCAGATGGGCTGGCATTCAAAAGTATGCAGTTGGTTGACCGCGCTTGTT
GAAAACAATGGCAACGCGGTACGAAGCGAAGTAATCCAAATGAAAGTGGG
TCCGTCGTGCAACACTCTGAAAGTAAACTCATCGGATGGGTGGTTTTACT
TAAAAGCACCGCATGGAGATACTTCTGAAATAGAACTTACAAACTCCATT
GCCACCTTATTTCCAGAGTTCACGATAGACATGTTAGGTGTTACGATGGA
GCACAAAGCATTCGTTACGAGGGAGTTTCAAGAGGAAGAAGACTTTGATG
TACAGGACGCATTGAAAACACTCGCAGCTTTGCAACAAGCCTCAATCGCA
TCAAAAGATCATCTGATAAAGACAGGTTGCCCGGTACGAGGTCCCAGAGA
AATGTTAGCTGAAGTTCGAAAGTGGTCAAGCGATCCGAAGTACGTTGAAA
AAGGATATAAGCAACGAGAATTGAAACATTTGATTCCGTCTCTGGGGAAA
ATGCTAACCAGACTACAAGAGTTCAATCTGCCTCTTACTCTCACACATGG
TGA

Coding sequence (CDS) from alignment at NODE_807_length_17687_cov_4.345135:14817..15919+

>Gcaud1901.t1 ID=Gcaud1901.t1|Name=Gcaud1901.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1023bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:14817..15919+ (Gracilaria caudata M_176_S67 male)
ATGTCATCCTCGTCCTGTGATGGGGCAAATAGCCTAAGCGAATCTGAATC
CCATTCGCCAGATTCTGATTCAGAAGGCTCCTTTTATTGGGTGGAATACG
TGCGCGTTCTGTTATTAAACACCGCCGGAACGCATGCGTTCATGTGTTCT
GAGAATGGACGGTGGGACCTTCCGTACTTTGTTTACAACGACATGGATTC
TGGAGACTACGCTAGATGCTGCGCGGATTTTCAATCTATGCTTTCCATAG
ACTCTAGAAAGCCTCTGTTTACTGCATTAGTTGAACTGCTTGGGGCCGAA
GCTGCTCTTAAACCCCGTGGATATGTTGAACCAAAGAGTTCTGACGTTGG
TTTCGCAAGACTACTGTGGGTTGAACCACACACTGAAATACAACAGCTTC
CGAATAACTGTCAATGGAAAGACGCACAGTTTGTTAGCACCATCAAAGCC
GATGAGAGCTATGACACAGCACTACATGTGGTCATTGAGCGCGTCAATGC
TGTTTTGACGCGAGATGAGTCCTTATTTAGACTGCTTCGGGAACCACGCC
ATCAGATGGGCTGGCATTCAAAAGTATGCAGTTGGTTGACCGCGCTTGTT
GAAAACAATGGCAACGCGGTACGAAGCGAAGTAATCCAAATGAAAGTGGG
TCCGTCGTGCAACACTCTGAAAGTAAACTCATCGGATGGGTGGTTTTACT
TAAAAGCACCGCATGGAGATACTTCTGAAATAGAACTTACAAACTCCATT
GCCACCTTATTTCCAGAGTTCACGATAGACATGTTAGGTGTTACGATGGA
GCACAAAGCATTCGTTACGAGGGAGTTTCAAGAGGAAGAAGACTTTGATG
TACAGGACGCATTGAAAACACTCGCAGCTTTGCAACAAGCCTCAATCGCA
TCAAAAGATCATCTGATAAAGACAGGTTGCCCGGTACGAGGTCCCAGAGA
AATGTTAGCTGAAGTTCGAAAGTGGTCAAGCGATCCGAAAGTTCAATCTG
CCTCTTACTCTCACACATGGTGA