Gcaud1899.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1899.t1
Unique Name	Gcaud1899.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	595

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_807_length_17687_cov_4.345135	contig	NODE_807_length_17687_cov_4.345135:9819..12096 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	218851.Aquca_015_00416.1
PFAMs	Peptidase_M14
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0005575,GO:0005576,GO:0005615,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0044421,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Evalue	1.96e-35
EggNOG OGs	COG2866@1\|root,KOG2650@2759\|Eukaryota,37I2T@33090\|Viridiplantae,3GEGT@35493\|Streptophyta
Description	carboxypeptidase
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1899	Gcaud1899	Gracilaria caudata M_176_S67 male	gene	NODE_807_length_17687_cov_4.345135 9819..12096 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1899.t1	Gcaud1899.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_807_length_17687_cov_4.345135 9819..12096 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1899.t1.start1	Gcaud1899.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_807_length_17687_cov_4.345135 9819..9821 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1899.t1.CDS1	Gcaud1899.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_807_length_17687_cov_4.345135 9819..11442 +
Gcaud1899.t1.CDS2	Gcaud1899.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_807_length_17687_cov_4.345135 11820..11907 +
Gcaud1899.t1.CDS3	Gcaud1899.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_807_length_17687_cov_4.345135 12024..12096 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1899.t1.exon1	Gcaud1899.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_807_length_17687_cov_4.345135 9819..11442 +
Gcaud1899.t1.exon2	Gcaud1899.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_807_length_17687_cov_4.345135 11820..11907 +
Gcaud1899.t1.exon3	Gcaud1899.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_807_length_17687_cov_4.345135 12024..12096 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1899.t1.intron1	Gcaud1899.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_807_length_17687_cov_4.345135 11443..11819 +
Gcaud1899.t1.intron2	Gcaud1899.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_807_length_17687_cov_4.345135 11908..12023 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1899.t1.stop1	Gcaud1899.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_807_length_17687_cov_4.345135 12094..12096 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_807_length_17687_cov_4.345135:9819..12096+
coding sequence from alignment at NODE_807_length_17687_cov_4.345135:9819..12096+

mRNA sequence

>Gcaud1899.t1 ID=Gcaud1899.t1|Name=Gcaud1899.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=595bp
MRLLHVVLLHLLFPCFLCFESLILAQGELRKDRPVRPLHFAAPDWNLYHR
TSNLFKALLDTAQSCQGFTVTPYIIDAGHSLTPEQPPKSVPVTTDSHLPP
SGADGLLYFTVRSRSSPRFLLRAKPTPKTRSVFVFGEEGRDLLTSEISLR
VLSKLCSNDTFMLSLPLQAELILVPVANPDGRTIAEMGRRCDRTNANDVE
LDRNWASFWRFEEDSQQNATKTKVSAIRAAVSRRFSRADAPTDEIVSPIS
GTHPFSEPESRALRNLVFLMRPTSYVSVRTGAPAITVPWDCKDQRLPGAQ
FTRLSQVMKSVNAAHCSRCKSGSLRNVTGVMKCGTSTDYMYGTMRVPFVY
SWHVYDAEAPQGDCFRKHNPVSKAAYERITNNWAGAVLNFSLAVQHWMTL
ESEQGVDVAEQNASLAAAEATVWRAEAIAKGMPDPESADLDATTSSVDEN
LGTAKNQTAKETGDKGDQHKNDKPASMAIADEVPSHQEHIEHKLSDADDS
EYHLRFLTGWAGAWASLGILSLGLFIAKRYFFGDRRRRYRYHGYNIYNQL
NVKYVHRLRGRKPPRKRLPTAMRLRLRREQSGPIMQHLHIHLLQ*

spliced messenger RNA

>Gcaud1899.t1 ID=Gcaud1899.t1|Name=Gcaud1899.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1785bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:9819..12096+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCTTCTTCATGTCGTCCTTCTGCACTTGCTGTTTCCATGCTTCCT
GTGCTTCGAGAGCTTGATCCTGGCGCAGGGCGAGCTTCGAAAGGATCGTC
CAGTGCGCCCGTTGCACTTTGCCGCCCCGGATTGGAACCTGTATCATCGT
ACTAGCAATCTGTTCAAAGCGCTTTTGGACACTGCTCAATCTTGTCAAGG
TTTCACCGTCACCCCATATATCATCGATGCTGGCCATTCTCTCACACCTG
AACAACCCCCCAAGTCCGTACCAGTAACTACTGACTCTCACTTGCCTCCT
TCTGGGGCCGATGGACTCTTGTACTTCACCGTCCGTTCTCGGTCGTCTCC
TCGCTTCTTGCTACGAGCAAAGCCAACGCCCAAAACGCGCTCTGTATTCG
TCTTTGGTGAGGAGGGACGTGACTTGCTAACTTCAGAGATCTCCTTACGC
GTCCTTTCGAAACTCTGCAGCAATGATACTTTTATGCTTTCTCTCCCTTT
GCAGGCGGAGCTCATTCTCGTCCCTGTTGCAAATCCTGACGGTCGAACCA
TCGCCGAAATGGGTCGTCGCTGTGACCGCACCAACGCTAACGACGTCGAG
CTCGATAGAAACTGGGCATCATTCTGGCGCTTCGAAGAAGATTCACAACA
GAATGCCACGAAGACCAAGGTTTCCGCCATTCGTGCTGCGGTTTCACGAC
GCTTCTCACGCGCTGACGCACCTACCGACGAAATTGTGTCGCCAATATCC
GGGACACACCCCTTCTCGGAGCCTGAGTCTAGGGCTCTGAGAAATCTTGT
GTTTCTTATGCGCCCTACTAGCTACGTCAGTGTTCGTACAGGTGCCCCGG
CCATTACGGTCCCGTGGGATTGTAAGGACCAGCGGTTACCTGGAGCGCAA
TTCACACGGCTATCACAAGTTATGAAGAGCGTTAACGCGGCGCATTGCAG
TCGATGTAAATCTGGATCTTTGAGAAATGTTACAGGCGTGATGAAATGCG
GAACAAGTACAGATTATATGTATGGCACCATGAGAGTGCCATTCGTGTAC
TCCTGGCATGTGTATGATGCCGAAGCACCCCAGGGGGATTGTTTCCGGAA
ACATAACCCCGTGAGCAAGGCAGCATACGAGCGCATTACCAACAACTGGG
CAGGGGCTGTTCTTAACTTCTCGCTCGCTGTGCAACATTGGATGACATTA
GAGAGTGAACAGGGAGTCGATGTCGCTGAGCAAAATGCCTCCCTCGCGGC
AGCAGAGGCTACTGTATGGCGTGCAGAGGCTATCGCCAAAGGTATGCCAG
ACCCGGAAAGTGCTGACTTGGACGCTACCACCAGCAGTGTTGATGAGAAC
CTAGGGACTGCGAAGAACCAAACAGCGAAAGAAACAGGAGACAAAGGAGA
CCAGCACAAAAACGACAAGCCTGCGTCGATGGCGATTGCAGACGAAGTAC
CTTCGCATCAAGAACATATCGAACACAAATTGTCTGACGCAGACGATAGC
GAATATCACCTCCGGTTTCTTACTGGATGGGCAGGTGCTTGGGCATCTCT
AGGCATTCTCAGTCTAGGCCTGTTCATTGCGAAGCGTTACTTTTTTGGGG
ATCGACGAAGGCGATATAGATACCATGGATACAACATTTACAACCAACTG
AACGTCAAGTATGTCCATCGTCTCCGTGGTCGTAAACCACCAAGGAAGCG
ATTACCTACAGCTATGCGCTTGCGCTTGAGAAGGGAACAGTCAGGACCAA
TAATGCAACATCTACACATTCATCTTCTGCAATAG

protein sequence of Gcaud1899.t1

>Gcaud1899.t1 ID=Gcaud1899.t1|Name=Gcaud1899.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=595bp
MRLLHVVLLHLLFPCFLCFESLILAQGELRKDRPVRPLHFAAPDWNLYHR
TSNLFKALLDTAQSCQGFTVTPYIIDAGHSLTPEQPPKSVPVTTDSHLPP
SGADGLLYFTVRSRSSPRFLLRAKPTPKTRSVFVFGEEGRDLLTSEISLR
VLSKLCSNDTFMLSLPLQAELILVPVANPDGRTIAEMGRRCDRTNANDVE
LDRNWASFWRFEEDSQQNATKTKVSAIRAAVSRRFSRADAPTDEIVSPIS
GTHPFSEPESRALRNLVFLMRPTSYVSVRTGAPAITVPWDCKDQRLPGAQ
FTRLSQVMKSVNAAHCSRCKSGSLRNVTGVMKCGTSTDYMYGTMRVPFVY
SWHVYDAEAPQGDCFRKHNPVSKAAYERITNNWAGAVLNFSLAVQHWMTL
ESEQGVDVAEQNASLAAAEATVWRAEAIAKGMPDPESADLDATTSSVDEN
LGTAKNQTAKETGDKGDQHKNDKPASMAIADEVPSHQEHIEHKLSDADDS
EYHLRFLTGWAGAWASLGILSLGLFIAKRYFFGDRRRRYRYHGYNIYNQL
NVKYVHRLRGRKPPRKRLPTAMRLRLRREQSGPIMQHLHIHLLQ*

mRNA from alignment at NODE_807_length_17687_cov_4.345135:9819..12096+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1899.t1 ID=Gcaud1899.t1|Name=Gcaud1899.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2278bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:9819..12096+ (Gracilaria caudata M_176_S67 male)
ATGCGCCTTCTTCATGTCGTCCTTCTGCACTTGCTGTTTCCATGCTTCCT
GTGCTTCGAGAGCTTGATCCTGGCGCAGGGCGAGCTTCGAAAGGATCGTC
CAGTGCGCCCGTTGCACTTTGCCGCCCCGGATTGGAACCTGTATCATCGT
ACTAGCAATCTGTTCAAAGCGCTTTTGGACACTGCTCAATCTTGTCAAGG
TTTCACCGTCACCCCATATATCATCGATGCTGGCCATTCTCTCACACCTG
AACAACCCCCCAAGTCCGTACCAGTAACTACTGACTCTCACTTGCCTCCT
TCTGGGGCCGATGGACTCTTGTACTTCACCGTCCGTTCTCGGTCGTCTCC
TCGCTTCTTGCTACGAGCAAAGCCAACGCCCAAAACGCGCTCTGTATTCG
TCTTTGGTGAGGAGGGACGTGACTTGCTAACTTCAGAGATCTCCTTACGC
GTCCTTTCGAAACTCTGCAGCAATGATACTTTTATGCTTTCTCTCCCTTT
GCAGGCGGAGCTCATTCTCGTCCCTGTTGCAAATCCTGACGGTCGAACCA
TCGCCGAAATGGGTCGTCGCTGTGACCGCACCAACGCTAACGACGTCGAG
CTCGATAGAAACTGGGCATCATTCTGGCGCTTCGAAGAAGATTCACAACA
GAATGCCACGAAGACCAAGGTTTCCGCCATTCGTGCTGCGGTTTCACGAC
GCTTCTCACGCGCTGACGCACCTACCGACGAAATTGTGTCGCCAATATCC
GGGACACACCCCTTCTCGGAGCCTGAGTCTAGGGCTCTGAGAAATCTTGT
GTTTCTTATGCGCCCTACTAGCTACGTCAGTGTTCGTACAGGTGCCCCGG
CCATTACGGTCCCGTGGGATTGTAAGGACCAGCGGTTACCTGGAGCGCAA
TTCACACGGCTATCACAAGTTATGAAGAGCGTTAACGCGGCGCATTGCAG
TCGATGTAAATCTGGATCTTTGAGAAATGTTACAGGCGTGATGAAATGCG
GAACAAGTACAGATTATATGTATGGCACCATGAGAGTGCCATTCGTGTAC
TCCTGGCATGTGTATGATGCCGAAGCACCCCAGGGGGATTGTTTCCGGAA
ACATAACCCCGTGAGCAAGGCAGCATACGAGCGCATTACCAACAACTGGG
CAGGGGCTGTTCTTAACTTCTCGCTCGCTGTGCAACATTGGATGACATTA
GAGAGTGAACAGGGAGTCGATGTCGCTGAGCAAAATGCCTCCCTCGCGGC
AGCAGAGGCTACTGTATGGCGTGCAGAGGCTATCGCCAAAGGTATGCCAG
ACCCGGAAAGTGCTGACTTGGACGCTACCACCAGCAGTGTTGATGAGAAC
CTAGGGACTGCGAAGAACCAAACAGCGAAAGAAACAGGAGACAAAGGAGA
CCAGCACAAAAACGACAAGCCTGCGTCGATGGCGATTGCAGACGAAGTAC
CTTCGCATCAAGAACATATCGAACACAAATTGTCTGACGCAGACGATAGC
GAATATCACCTCCGGTTTCTTACTGGATGGGCAGGTGCTTGGGCATCTCT
AGGCATTCTCAGTCTAGGCCTGTTCATTGCGAAGCGTTACTTTTTTGGGG
ATCGACGAAGGCGATATAGATACCGTTCGCGTGGCCCAAGATTGCCCGGA
AAGAGGGCGTAATTGGCTGCTCATGCGGATCCAACTACGAGTAATTGTCT
TCGGGATCGATTATGTCCATCAACCTCAATCCACGAGCTGCAAATTCTGT
GGAAGAGTACGACAAGTTCATGGCGCACCATACCAAGACTCAATAACACG
TTGGGGCGAATATCAAAGCCAACCATATCAAATCTCGGATCACTCGGTAA
TTTCCCATTACCCGGAAACGTTTGAAGTCGTGGATTCGAAAATACTCACC
GACTTCCACGTAGTGCCGCCATTGTGGGGAAATCAAAAGATGAAGTATCG
TTCTGCGCAATCCACACATTCACATCGCCCTTCATTTGTTTCAAACACCA
GATGGATACAACATTTACAACCAACTGAACGTCAAGTATGTCCATCGTCT
CCGTGGTCGTAAACCACCAAGGAAGCGATTACCTACAGCGTGCGTGACTC
CTTCGACTTGTGTTCCCAGCGGCACTGACACGCTTCGCGCCAGCGCGATA
TGACAAGGACAACATTAAGAGTGTTAAGAGAGTTAACTTTATTTCTTTCT
CCCAGTATGCGCTTGCGCTTGAGAAGGGAACAGTCAGGACCAATAATGCA
ACATCTACACATTCATCTTCTGCAATAG

Coding sequence (CDS) from alignment at NODE_807_length_17687_cov_4.345135:9819..12096+

>Gcaud1899.t1 ID=Gcaud1899.t1|Name=Gcaud1899.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1785bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:9819..12096+ (Gracilaria caudata M_176_S67 male)
ATGCGCCTTCTTCATGTCGTCCTTCTGCACTTGCTGTTTCCATGCTTCCT
GTGCTTCGAGAGCTTGATCCTGGCGCAGGGCGAGCTTCGAAAGGATCGTC
CAGTGCGCCCGTTGCACTTTGCCGCCCCGGATTGGAACCTGTATCATCGT
ACTAGCAATCTGTTCAAAGCGCTTTTGGACACTGCTCAATCTTGTCAAGG
TTTCACCGTCACCCCATATATCATCGATGCTGGCCATTCTCTCACACCTG
AACAACCCCCCAAGTCCGTACCAGTAACTACTGACTCTCACTTGCCTCCT
TCTGGGGCCGATGGACTCTTGTACTTCACCGTCCGTTCTCGGTCGTCTCC
TCGCTTCTTGCTACGAGCAAAGCCAACGCCCAAAACGCGCTCTGTATTCG
TCTTTGGTGAGGAGGGACGTGACTTGCTAACTTCAGAGATCTCCTTACGC
GTCCTTTCGAAACTCTGCAGCAATGATACTTTTATGCTTTCTCTCCCTTT
GCAGGCGGAGCTCATTCTCGTCCCTGTTGCAAATCCTGACGGTCGAACCA
TCGCCGAAATGGGTCGTCGCTGTGACCGCACCAACGCTAACGACGTCGAG
CTCGATAGAAACTGGGCATCATTCTGGCGCTTCGAAGAAGATTCACAACA
GAATGCCACGAAGACCAAGGTTTCCGCCATTCGTGCTGCGGTTTCACGAC
GCTTCTCACGCGCTGACGCACCTACCGACGAAATTGTGTCGCCAATATCC
GGGACACACCCCTTCTCGGAGCCTGAGTCTAGGGCTCTGAGAAATCTTGT
GTTTCTTATGCGCCCTACTAGCTACGTCAGTGTTCGTACAGGTGCCCCGG
CCATTACGGTCCCGTGGGATTGTAAGGACCAGCGGTTACCTGGAGCGCAA
TTCACACGGCTATCACAAGTTATGAAGAGCGTTAACGCGGCGCATTGCAG
TCGATGTAAATCTGGATCTTTGAGAAATGTTACAGGCGTGATGAAATGCG
GAACAAGTACAGATTATATGTATGGCACCATGAGAGTGCCATTCGTGTAC
TCCTGGCATGTGTATGATGCCGAAGCACCCCAGGGGGATTGTTTCCGGAA
ACATAACCCCGTGAGCAAGGCAGCATACGAGCGCATTACCAACAACTGGG
CAGGGGCTGTTCTTAACTTCTCGCTCGCTGTGCAACATTGGATGACATTA
GAGAGTGAACAGGGAGTCGATGTCGCTGAGCAAAATGCCTCCCTCGCGGC
AGCAGAGGCTACTGTATGGCGTGCAGAGGCTATCGCCAAAGGTATGCCAG
ACCCGGAAAGTGCTGACTTGGACGCTACCACCAGCAGTGTTGATGAGAAC
CTAGGGACTGCGAAGAACCAAACAGCGAAAGAAACAGGAGACAAAGGAGA
CCAGCACAAAAACGACAAGCCTGCGTCGATGGCGATTGCAGACGAAGTAC
CTTCGCATCAAGAACATATCGAACACAAATTGTCTGACGCAGACGATAGC
GAATATCACCTCCGGTTTCTTACTGGATGGGCAGGTGCTTGGGCATCTCT
AGGCATTCTCAGTCTAGGCCTGTTCATTGCGAAGCGTTACTTTTTTGGGG
ATCGACGAAGGCGATATAGATACCATGGATACAACATTTACAACCAACTG
AACGTCAAGTATGTCCATCGTCTCCGTGGTCGTAAACCACCAAGGAAGCG
ATTACCTACAGCTATGCGCTTGCGCTTGAGAAGGGAACAGTCAGGACCAA
TAATGCAACATCTACACATTCATCTTCTGCAATAG