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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 55529.EKX49376 |
| Preferred name | HIS6 |
| PFAMs | His_biosynth |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00945 |
| KEGG ko | ko:K01814 |
| KEGG Reaction | R04640 |
| KEGG Pathway | ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 |
| KEGG Module | M00026 |
| GOs | GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 |
| Evalue | 4.46e-98 |
| EggNOG OGs | COG0106@1|root,KOG3055@2759|Eukaryota |
| EC | 5.3.1.16 |
| Description | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity |
| COG category | E |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1895.t1.start1 | Gcaud1895.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_807_length_17687_cov_4.345135 3375..3377 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1895.t1.stop1 | Gcaud1895.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_807_length_17687_cov_4.345135 4902..4904 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1895.t1 ID=Gcaud1895.t1|Name=Gcaud1895.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=313bp
LLYCPSCHLKGGGSRGSTWNVKETSYSRFGALDAEDKTQHHHHEADRRLR
EMTMRAMRFRPCIDIHQNRVKQIVGGTLTENEQPETNFETDMAPAHFASM
YRDDRLPGGHVIMLGPGNEDAACQALEAFPDGMQVGGGIQPITAGRFLNA
GASHVIVTSYVFREGTIVWERVEEMIRTVGKNRLVLDVSCRERDGEYFVC
TDRWQKWTDFKLDARNFERLGDRCDEILVHAVDLEGKRSGIDLKLIRYLA
TWATVPVTYAGGVQTMNDLELAKSEGRSLVDVTIGSALDIFGGQLKYKEA
VRWQRLQESACV* back to topspliced messenger RNA >Gcaud1895.t1 ID=Gcaud1895.t1|Name=Gcaud1895.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=939bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:3375..4904+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
CTGCTCTACTGTCCCAGCTGTCATCTAAAGGGGGGCGGATCACGGGGCTC
TACTTGGAATGTGAAGGAAACCTCTTACTCTAGGTTCGGCGCTCTAGATG
CGGAGGATAAAACGCAACATCACCATCACGAAGCTGACCGCAGACTGAGA
GAAATGACCATGCGAGCCATGCGTTTTCGCCCCTGCATTGATATCCATCA
AAATCGCGTGAAGCAGATCGTTGGAGGAACTTTAACCGAAAACGAACAGC
CCGAAACGAACTTTGAAACAGACATGGCACCAGCTCACTTCGCGTCCATG
TATCGCGATGATCGATTGCCAGGAGGCCACGTCATAATGCTAGGACCGGG
AAATGAAGACGCTGCCTGTCAAGCGTTGGAAGCTTTTCCGGATGGGATGC
AGGTCGGTGGTGGAATCCAACCGATTACGGCGGGTCGTTTCTTAAATGCC
GGAGCTAGTCATGTGATTGTAACCTCTTACGTGTTCCGAGAAGGTACAAT
CGTATGGGAACGAGTAGAAGAAATGATTCGTACTGTCGGCAAGAATCGCC
TTGTCTTAGATGTCAGCTGTCGAGAACGTGATGGTGAGTATTTCGTCTGC
ACGGATAGATGGCAGAAATGGACAGACTTCAAACTTGATGCCAGAAATTT
TGAAAGGCTCGGTGATCGATGCGACGAAATCTTGGTGCATGCCGTCGACT
TGGAAGGAAAGAGATCGGGAATCGATTTAAAACTGATCCGCTACCTTGCG
ACGTGGGCAACTGTACCGGTCACCTATGCTGGGGGAGTGCAAACAATGAA
TGATCTGGAGCTTGCTAAATCAGAAGGCAGAAGTCTTGTGGACGTTACAA
TTGGCTCTGCACTGGACATCTTTGGTGGTCAATTGAAATACAAGGAGGCC
GTGCGGTGGCAGCGTCTGCAGGAAAGTGCATGTGTCTAA back to topprotein sequence of Gcaud1895.t1 >Gcaud1895.t1 ID=Gcaud1895.t1|Name=Gcaud1895.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=313bp
LLYCPSCHLKGGGSRGSTWNVKETSYSRFGALDAEDKTQHHHHEADRRLR
EMTMRAMRFRPCIDIHQNRVKQIVGGTLTENEQPETNFETDMAPAHFASM
YRDDRLPGGHVIMLGPGNEDAACQALEAFPDGMQVGGGIQPITAGRFLNA
GASHVIVTSYVFREGTIVWERVEEMIRTVGKNRLVLDVSCRERDGEYFVC
TDRWQKWTDFKLDARNFERLGDRCDEILVHAVDLEGKRSGIDLKLIRYLA
TWATVPVTYAGGVQTMNDLELAKSEGRSLVDVTIGSALDIFGGQLKYKEA
VRWQRLQESACV* back to topmRNA from alignment at NODE_807_length_17687_cov_4.345135:3375..4904+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1895.t1 ID=Gcaud1895.t1|Name=Gcaud1895.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:3375..4904+ (Gracilaria caudata M_176_S67 male)
CTGCTCTACTGTCCCAGCTGTCATCTAAAGGGGTATGTATGATCATCCAC
AATTCCCTACCTCTCCAGAAAAGAAAGATCTCTTCCACGCCAAATCTGAC
GACTTCTTAAACGGTCTTAGGGGCGGATCACGGGGCTCTACGTAGGAACG
CGCAGGAAACGTCCAGCAGAGTATCTTCAACAGGCTTGAAGATCGTGGGT
TGGTCAAGCACACAGCACAAGGCCGTCAAGGGGATGAAGGGTTTGTAGTC
CGCCAGAAGGTCAAAAATGCACCTCTGTGGCCCGACAATTTTGCAAGGTA
CAACGCAAGGGTACATACATGCCCCTGTCTTTATACATGCATCGAGTTGG
AATGTGAAGGAAACCTCTTACGTGAGTTATCATGCAGTACGTGTACACGG
ACACGTGGGTAAGGTTTGACCAACCACGAAGAGCTCAGACCATTATATCT
AAGCCGAACTGCTTGAGACTCCCTTGCAATGCATGAGTCAAGCTAACCTT
TTACCTCAACTCCAATCTCATCCGTTAACAAAAACGTCGACCAAAAAGTC
TAGGTTCGGCGCTCTAGATGCGGAGGATAAAACGCAACATCACCATCACG
AAGCTGACCGCAGACTGTACCTTTGCAATAGCGATGGAGTGTTCACCACC
AGCTGCATTTGTTGGCCTCTTGCCGGTTCAAGGTACAGACTCGAACCGAG
CTCTTTCAATTCCACCCAAAGCACTTTCGGTGTCCAGGAGAGAAATGACC
ATGCGAGCCATGCGTTTTCGCCCCTGCATTGATATCCATCAAAATCGCGT
GAAGCAGATCGTTGGAGGAACTTTAACCGAAAACGAACAGCCCGAAACGA
ACTTTGAAACAGACATGGCACCAGCTCACTTCGCGTCCATGTATCGCGAT
GATCGATTGCCAGGAGGCCACGTCATAATGCTAGGACCGGGAAATGAAGA
CGCTGCCTGTCAAGCGTTGGAAGCTTTTCCGGATGGGATGCAGGTCGGTG
GTGGAATCCAACCGATTACGGCGGGTCGTTTCTTAAATGCCGGAGCTAGT
CATGTGATTGTAACCTCTTACGTGTTCCGAGAAGGTACAATCGTATGGGA
ACGAGTAGAAGAAATGATTCGTACTGTCGGCAAGAATCGCCTTGTCTTAG
ATGTCAGCTGTCGAGAACGTGATGGTGAGTATTTCGTCTGCACGGATAGA
TGGCAGAAATGGACAGACTTCAAACTTGATGCCAGAAATTTTGAAAGGCT
CGGTGATCGATGCGACGAAATCTTGGTGCATGCCGTCGACTTGGAAGGAA
AGAGATCGGGAATCGATTTAAAACTGATCCGCTACCTTGCGACGTGGGCA
ACTGTACCGGTCACCTATGCTGGGGGAGTGCAAACAATGAATGATCTGGA
GCTTGCTAAATCAGAAGGCAGAAGTCTTGTGGACGTTACAATTGGCTCTG
CACTGGACATCTTTGGTGGTCAATTGAAATACAAGGAGGCCGTGCGGTGG
CAGCGTCTGCAGGAAAGTGCATGTGTCTAA back to topCoding sequence (CDS) from alignment at NODE_807_length_17687_cov_4.345135:3375..4904+ >Gcaud1895.t1 ID=Gcaud1895.t1|Name=Gcaud1895.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=939bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:3375..4904+ (Gracilaria caudata M_176_S67 male)
CTGCTCTACTGTCCCAGCTGTCATCTAAAGGGGGGCGGATCACGGGGCTC
TACTTGGAATGTGAAGGAAACCTCTTACTCTAGGTTCGGCGCTCTAGATG
CGGAGGATAAAACGCAACATCACCATCACGAAGCTGACCGCAGACTGAGA
GAAATGACCATGCGAGCCATGCGTTTTCGCCCCTGCATTGATATCCATCA
AAATCGCGTGAAGCAGATCGTTGGAGGAACTTTAACCGAAAACGAACAGC
CCGAAACGAACTTTGAAACAGACATGGCACCAGCTCACTTCGCGTCCATG
TATCGCGATGATCGATTGCCAGGAGGCCACGTCATAATGCTAGGACCGGG
AAATGAAGACGCTGCCTGTCAAGCGTTGGAAGCTTTTCCGGATGGGATGC
AGGTCGGTGGTGGAATCCAACCGATTACGGCGGGTCGTTTCTTAAATGCC
GGAGCTAGTCATGTGATTGTAACCTCTTACGTGTTCCGAGAAGGTACAAT
CGTATGGGAACGAGTAGAAGAAATGATTCGTACTGTCGGCAAGAATCGCC
TTGTCTTAGATGTCAGCTGTCGAGAACGTGATGGTGAGTATTTCGTCTGC
ACGGATAGATGGCAGAAATGGACAGACTTCAAACTTGATGCCAGAAATTT
TGAAAGGCTCGGTGATCGATGCGACGAAATCTTGGTGCATGCCGTCGACT
TGGAAGGAAAGAGATCGGGAATCGATTTAAAACTGATCCGCTACCTTGCG
ACGTGGGCAACTGTACCGGTCACCTATGCTGGGGGAGTGCAAACAATGAA
TGATCTGGAGCTTGCTAAATCAGAAGGCAGAAGTCTTGTGGACGTTACAA
TTGGCTCTGCACTGGACATCTTTGGTGGTCAATTGAAATACAAGGAGGCC
GTGCGGTGGCAGCGTCTGCAGGAAAGTGCATGTGTCTAA back to top
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