Gcaud1892.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1892.t1
Unique NameGcaud1892.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_809_length_17679_cov_4.568569contigNODE_809_length_17679_cov_4.568569:4709..5056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1892Gcaud1892Gracilaria caudata M_176_S67 malegeneNODE_809_length_17679_cov_4.568569 4709..5056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1892.t1.CDS1Gcaud1892.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_809_length_17679_cov_4.568569 4709..5056 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1892.t1.exon1Gcaud1892.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_809_length_17679_cov_4.568569 4709..5056 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1892.t1.start1Gcaud1892.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_809_length_17679_cov_4.568569 5054..5056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1892.t1Gcaud1892.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_809_length_17679_cov_4.568569 4709..5056 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1892.t1 ID=Gcaud1892.t1|Name=Gcaud1892.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=116bp
MESGDEASPSIDNDREVTPVPTAAASIIDFEAQKVFGDKNEAEKAEEGER
EDASEGKEATMLSFVNSVQEMFSGVPRSTTQVQQDVFALPSFFVRGLSVG
LSMAVVRQHSAHHLRS
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spliced messenger RNA

>Gcaud1892.t1 ID=Gcaud1892.t1|Name=Gcaud1892.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp|location=Sequence derived from alignment at NODE_809_length_17679_cov_4.568569:4709..5056- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCTGGCGACGAGGCTTCACCTTCCATCGACAATGATCGCGAGGT
CACTCCTGTGCCTACTGCCGCTGCAAGCATCATCGATTTCGAAGCCCAGA
AAGTCTTCGGAGATAAAAATGAAGCCGAAAAGGCAGAAGAAGGAGAGCGG
GAAGATGCCAGTGAAGGAAAGGAAGCGACCATGCTTTCCTTTGTTAACTC
CGTTCAGGAAATGTTTTCTGGTGTACCGAGATCGACTACGCAAGTTCAAC
AGGATGTCTTCGCGTTGCCCTCATTCTTCGTACGGGGACTCAGCGTTGGT
TTGTCAATGGCAGTTGTGAGGCAACACTCGGCGCACCACCTCCGATCC
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protein sequence of Gcaud1892.t1

>Gcaud1892.t1 ID=Gcaud1892.t1|Name=Gcaud1892.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=116bp
MESGDEASPSIDNDREVTPVPTAAASIIDFEAQKVFGDKNEAEKAEEGER
EDASEGKEATMLSFVNSVQEMFSGVPRSTTQVQQDVFALPSFFVRGLSVG
LSMAVVRQHSAHHLRS
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mRNA from alignment at NODE_809_length_17679_cov_4.568569:4709..5056-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1892.t1 ID=Gcaud1892.t1|Name=Gcaud1892.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp|location=Sequence derived from alignment at NODE_809_length_17679_cov_4.568569:4709..5056- (Gracilaria caudata M_176_S67 male)
ATGGAGTCTGGCGACGAGGCTTCACCTTCCATCGACAATGATCGCGAGGT
CACTCCTGTGCCTACTGCCGCTGCAAGCATCATCGATTTCGAAGCCCAGA
AAGTCTTCGGAGATAAAAATGAAGCCGAAAAGGCAGAAGAAGGAGAGCGG
GAAGATGCCAGTGAAGGAAAGGAAGCGACCATGCTTTCCTTTGTTAACTC
CGTTCAGGAAATGTTTTCTGGTGTACCGAGATCGACTACGCAAGTTCAAC
AGGATGTCTTCGCGTTGCCCTCATTCTTCGTACGGGGACTCAGCGTTGGT
TTGTCAATGGCAGTTGTGAGGCAACACTCGGCGCACCACCTCCGATCC
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Coding sequence (CDS) from alignment at NODE_809_length_17679_cov_4.568569:4709..5056-

>Gcaud1892.t1 ID=Gcaud1892.t1|Name=Gcaud1892.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=348bp|location=Sequence derived from alignment at NODE_809_length_17679_cov_4.568569:4709..5056- (Gracilaria caudata M_176_S67 male)
ATGGAGTCTGGCGACGAGGCTTCACCTTCCATCGACAATGATCGCGAGGT
CACTCCTGTGCCTACTGCCGCTGCAAGCATCATCGATTTCGAAGCCCAGA
AAGTCTTCGGAGATAAAAATGAAGCCGAAAAGGCAGAAGAAGGAGAGCGG
GAAGATGCCAGTGAAGGAAAGGAAGCGACCATGCTTTCCTTTGTTAACTC
CGTTCAGGAAATGTTTTCTGGTGTACCGAGATCGACTACGCAAGTTCAAC
AGGATGTCTTCGCGTTGCCCTCATTCTTCGTACGGGGACTCAGCGTTGGT
TTGTCAATGGCAGTTGTGAGGCAACACTCGGCGCACCACCTCCGATCC
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