Gcaud1890.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1890.t1
Unique NameGcaud1890.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length383
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1484_length_10307_cov_4.493148contigNODE_1484_length_10307_cov_4.493148:1169..2317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002506514.1
PFAMsBrix
Max annot lvl3041|Chlorophyta
KEGG koko:K14859
Evalue5.56e-71
EggNOG OGsKOG2963@1|root,KOG2963@2759|Eukaryota,37R2S@33090|Viridiplantae,34GZQ@3041|Chlorophyta
DescriptionBrix
COG categoryJ
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1890Gcaud1890Gracilaria caudata M_176_S67 malegeneNODE_1484_length_10307_cov_4.493148 1169..2317 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1890.t1.stop1Gcaud1890.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1484_length_10307_cov_4.493148 1169..1171 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1890.t1.CDS1Gcaud1890.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1484_length_10307_cov_4.493148 1169..2317 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1890.t1.exon1Gcaud1890.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1484_length_10307_cov_4.493148 1169..2317 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1890.t1.start1Gcaud1890.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1484_length_10307_cov_4.493148 2315..2317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1890.t1Gcaud1890.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1484_length_10307_cov_4.493148 1169..2317 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1890.t1 ID=Gcaud1890.t1|Name=Gcaud1890.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=383bp
MPRKAGGKRRKRRTHNFENGASDSIPRSFVFRRGQVPIAIRDLIPCLRTA
LMPHTARRLKERRFNSIRDYVSVATQIGVTHFWILSATPTSPYLRITTVP
QGPTLTFRVMEYSLSADVRATQRRPLALEQSHFEQPPLLVLNNFNHQSTD
VKLMAETFRHSFPSIDVSDARLSTMKRVLLVHRDVQSGDVYVRHYALKVQ
HAGLSKPVRKMVNKRRIPNMTNLTDVSELMDGAPGVFSSDSEMEENGNET
VQLAQQVQKVRKGTNSKIKLVEVGPRLRLQLVKIQAGLCEGAVLYHRFVS
KSKEEAAQDEKRIQGRKELKRKRREEQEANVKRKQDKKRAKKERHRKSIE
VLQARGGAAGDEGNEADDEGEGEGDSEHSEDV*
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spliced messenger RNA

>Gcaud1890.t1 ID=Gcaud1890.t1|Name=Gcaud1890.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at NODE_1484_length_10307_cov_4.493148:1169..2317- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAGAAAAGCGGGCGGAAAGCGTCGTAAACGACGCACACACAACTT
TGAAAATGGCGCGTCGGACTCCATTCCGCGCAGCTTCGTGTTTCGACGCG
GACAAGTGCCAATCGCCATTCGAGACCTGATCCCGTGCTTGCGCACAGCG
TTGATGCCTCATACCGCACGTCGTCTCAAGGAGCGACGCTTTAACAGCAT
TCGCGACTACGTTTCGGTTGCCACTCAGATTGGGGTGACGCACTTTTGGA
TCTTGTCTGCCACCCCCACTTCTCCATACCTTCGAATCACAACAGTTCCG
CAGGGACCCACTCTGACTTTCCGCGTGATGGAGTATTCGCTTTCTGCGGA
CGTGCGAGCCACGCAGAGACGGCCGCTTGCGTTGGAACAGTCTCACTTTG
AGCAGCCTCCGCTTTTGGTGTTGAACAACTTCAACCATCAAAGCACCGAC
GTGAAGCTGATGGCGGAGACATTTCGGCATTCATTTCCGTCCATTGATGT
ATCTGACGCTCGGCTTTCTACGATGAAGCGCGTGTTGCTCGTACACAGAG
ATGTGCAAAGCGGCGATGTTTACGTTCGACATTACGCACTCAAGGTGCAA
CACGCGGGGCTGTCCAAGCCGGTGCGAAAAATGGTGAACAAGCGACGAAT
ACCGAACATGACCAATCTGACGGACGTGTCCGAACTGATGGACGGCGCGC
CGGGCGTGTTCAGTTCCGACTCTGAAATGGAGGAGAACGGCAACGAGACG
GTGCAACTGGCGCAGCAGGTGCAAAAGGTGAGGAAAGGAACCAACAGCAA
GATCAAGTTGGTGGAAGTGGGGCCGCGTCTAAGACTGCAGCTGGTGAAAA
TTCAAGCCGGGCTGTGCGAGGGCGCGGTGCTGTACCATCGGTTTGTGAGT
AAGAGCAAGGAGGAGGCCGCTCAGGACGAAAAGAGAATACAGGGAAGGAA
GGAACTGAAACGAAAACGACGCGAGGAGCAGGAGGCGAACGTGAAACGGA
AACAGGACAAGAAAAGGGCGAAGAAGGAGCGACATCGAAAGAGCATCGAG
GTGCTGCAGGCGCGCGGCGGCGCGGCGGGGGATGAAGGAAACGAGGCGGA
CGACGAGGGCGAGGGCGAGGGCGACAGCGAGCACAGTGAGGACGTGTAG
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protein sequence of Gcaud1890.t1

>Gcaud1890.t1 ID=Gcaud1890.t1|Name=Gcaud1890.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=383bp
MPRKAGGKRRKRRTHNFENGASDSIPRSFVFRRGQVPIAIRDLIPCLRTA
LMPHTARRLKERRFNSIRDYVSVATQIGVTHFWILSATPTSPYLRITTVP
QGPTLTFRVMEYSLSADVRATQRRPLALEQSHFEQPPLLVLNNFNHQSTD
VKLMAETFRHSFPSIDVSDARLSTMKRVLLVHRDVQSGDVYVRHYALKVQ
HAGLSKPVRKMVNKRRIPNMTNLTDVSELMDGAPGVFSSDSEMEENGNET
VQLAQQVQKVRKGTNSKIKLVEVGPRLRLQLVKIQAGLCEGAVLYHRFVS
KSKEEAAQDEKRIQGRKELKRKRREEQEANVKRKQDKKRAKKERHRKSIE
VLQARGGAAGDEGNEADDEGEGEGDSEHSEDV*
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mRNA from alignment at NODE_1484_length_10307_cov_4.493148:1169..2317-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1890.t1 ID=Gcaud1890.t1|Name=Gcaud1890.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at NODE_1484_length_10307_cov_4.493148:1169..2317- (Gracilaria caudata M_176_S67 male)
ATGCCGAGAAAAGCGGGCGGAAAGCGTCGTAAACGACGCACACACAACTT
TGAAAATGGCGCGTCGGACTCCATTCCGCGCAGCTTCGTGTTTCGACGCG
GACAAGTGCCAATCGCCATTCGAGACCTGATCCCGTGCTTGCGCACAGCG
TTGATGCCTCATACCGCACGTCGTCTCAAGGAGCGACGCTTTAACAGCAT
TCGCGACTACGTTTCGGTTGCCACTCAGATTGGGGTGACGCACTTTTGGA
TCTTGTCTGCCACCCCCACTTCTCCATACCTTCGAATCACAACAGTTCCG
CAGGGACCCACTCTGACTTTCCGCGTGATGGAGTATTCGCTTTCTGCGGA
CGTGCGAGCCACGCAGAGACGGCCGCTTGCGTTGGAACAGTCTCACTTTG
AGCAGCCTCCGCTTTTGGTGTTGAACAACTTCAACCATCAAAGCACCGAC
GTGAAGCTGATGGCGGAGACATTTCGGCATTCATTTCCGTCCATTGATGT
ATCTGACGCTCGGCTTTCTACGATGAAGCGCGTGTTGCTCGTACACAGAG
ATGTGCAAAGCGGCGATGTTTACGTTCGACATTACGCACTCAAGGTGCAA
CACGCGGGGCTGTCCAAGCCGGTGCGAAAAATGGTGAACAAGCGACGAAT
ACCGAACATGACCAATCTGACGGACGTGTCCGAACTGATGGACGGCGCGC
CGGGCGTGTTCAGTTCCGACTCTGAAATGGAGGAGAACGGCAACGAGACG
GTGCAACTGGCGCAGCAGGTGCAAAAGGTGAGGAAAGGAACCAACAGCAA
GATCAAGTTGGTGGAAGTGGGGCCGCGTCTAAGACTGCAGCTGGTGAAAA
TTCAAGCCGGGCTGTGCGAGGGCGCGGTGCTGTACCATCGGTTTGTGAGT
AAGAGCAAGGAGGAGGCCGCTCAGGACGAAAAGAGAATACAGGGAAGGAA
GGAACTGAAACGAAAACGACGCGAGGAGCAGGAGGCGAACGTGAAACGGA
AACAGGACAAGAAAAGGGCGAAGAAGGAGCGACATCGAAAGAGCATCGAG
GTGCTGCAGGCGCGCGGCGGCGCGGCGGGGGATGAAGGAAACGAGGCGGA
CGACGAGGGCGAGGGCGAGGGCGACAGCGAGCACAGTGAGGACGTGTAG
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Coding sequence (CDS) from alignment at NODE_1484_length_10307_cov_4.493148:1169..2317-

>Gcaud1890.t1 ID=Gcaud1890.t1|Name=Gcaud1890.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1149bp|location=Sequence derived from alignment at NODE_1484_length_10307_cov_4.493148:1169..2317- (Gracilaria caudata M_176_S67 male)
ATGCCGAGAAAAGCGGGCGGAAAGCGTCGTAAACGACGCACACACAACTT
TGAAAATGGCGCGTCGGACTCCATTCCGCGCAGCTTCGTGTTTCGACGCG
GACAAGTGCCAATCGCCATTCGAGACCTGATCCCGTGCTTGCGCACAGCG
TTGATGCCTCATACCGCACGTCGTCTCAAGGAGCGACGCTTTAACAGCAT
TCGCGACTACGTTTCGGTTGCCACTCAGATTGGGGTGACGCACTTTTGGA
TCTTGTCTGCCACCCCCACTTCTCCATACCTTCGAATCACAACAGTTCCG
CAGGGACCCACTCTGACTTTCCGCGTGATGGAGTATTCGCTTTCTGCGGA
CGTGCGAGCCACGCAGAGACGGCCGCTTGCGTTGGAACAGTCTCACTTTG
AGCAGCCTCCGCTTTTGGTGTTGAACAACTTCAACCATCAAAGCACCGAC
GTGAAGCTGATGGCGGAGACATTTCGGCATTCATTTCCGTCCATTGATGT
ATCTGACGCTCGGCTTTCTACGATGAAGCGCGTGTTGCTCGTACACAGAG
ATGTGCAAAGCGGCGATGTTTACGTTCGACATTACGCACTCAAGGTGCAA
CACGCGGGGCTGTCCAAGCCGGTGCGAAAAATGGTGAACAAGCGACGAAT
ACCGAACATGACCAATCTGACGGACGTGTCCGAACTGATGGACGGCGCGC
CGGGCGTGTTCAGTTCCGACTCTGAAATGGAGGAGAACGGCAACGAGACG
GTGCAACTGGCGCAGCAGGTGCAAAAGGTGAGGAAAGGAACCAACAGCAA
GATCAAGTTGGTGGAAGTGGGGCCGCGTCTAAGACTGCAGCTGGTGAAAA
TTCAAGCCGGGCTGTGCGAGGGCGCGGTGCTGTACCATCGGTTTGTGAGT
AAGAGCAAGGAGGAGGCCGCTCAGGACGAAAAGAGAATACAGGGAAGGAA
GGAACTGAAACGAAAACGACGCGAGGAGCAGGAGGCGAACGTGAAACGGA
AACAGGACAAGAAAAGGGCGAAGAAGGAGCGACATCGAAAGAGCATCGAG
GTGCTGCAGGCGCGCGGCGGCGCGGCGGGGGATGAAGGAAACGAGGCGGA
CGACGAGGGCGAGGGCGAGGGCGACAGCGAGCACAGTGAGGACGTGTAG
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