Gcaud1888.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1888.t1
Unique NameGcaud1888.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length51
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2316_length_6104_cov_4.781473contigNODE_2316_length_6104_cov_4.781473:1510..1839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1888Gcaud1888Gracilaria caudata M_176_S67 malegeneNODE_2316_length_6104_cov_4.781473 1510..1839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1888.t1Gcaud1888.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2316_length_6104_cov_4.781473 1510..1839 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1888.t1.CDS1Gcaud1888.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2316_length_6104_cov_4.781473 1510..1514 -
Gcaud1888.t1.CDS2Gcaud1888.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2316_length_6104_cov_4.781473 1595..1735 -
Gcaud1888.t1.CDS3Gcaud1888.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2316_length_6104_cov_4.781473 1835..1839 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1888.t1.exon1Gcaud1888.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2316_length_6104_cov_4.781473 1510..1514 -
Gcaud1888.t1.exon2Gcaud1888.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2316_length_6104_cov_4.781473 1595..1735 -
Gcaud1888.t1.exon3Gcaud1888.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2316_length_6104_cov_4.781473 1835..1839 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1888.t1.intron1Gcaud1888.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2316_length_6104_cov_4.781473 1515..1594 -
Gcaud1888.t1.intron2Gcaud1888.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2316_length_6104_cov_4.781473 1736..1834 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1888.t1.start1Gcaud1888.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2316_length_6104_cov_4.781473 1837..1839 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1888.t1 ID=Gcaud1888.t1|Name=Gcaud1888.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=51bp
MTASLVQESIQTRFRSVADLQNCRIDPSETCLLRGGALETYWNNSIATRN
X
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spliced messenger RNA

>Gcaud1888.t1 ID=Gcaud1888.t1|Name=Gcaud1888.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=151bp|location=Sequence derived from alignment at NODE_2316_length_6104_cov_4.781473:1510..1839- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCATCGCTGGTGCAGGAGTCCATCCAGACCAGATTTCGATCGGT
TGCCGATCTTCAGAATTGCCGCATCGACCCCTCGGAAACGTGCCTCCTTC
GTGGAGGTGCTCTTGAGACCTATTGGAACAACTCAATTGCGACTCGCAAC
T
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protein sequence of Gcaud1888.t1

>Gcaud1888.t1 ID=Gcaud1888.t1|Name=Gcaud1888.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=51bp
MTASLVQESIQTRFRSVADLQNCRIDPSETCLLRGGALETYWNNSIATRN
X
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mRNA from alignment at NODE_2316_length_6104_cov_4.781473:1510..1839-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1888.t1 ID=Gcaud1888.t1|Name=Gcaud1888.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=330bp|location=Sequence derived from alignment at NODE_2316_length_6104_cov_4.781473:1510..1839- (Gracilaria caudata M_176_S67 male)
ATGACGTACGTATCCCACAACATGCAACCGTTTGTACTGGTCCTGCAATT
GAGAATCGTCGTGCCGCTAACGTTGACCACGTCGTGTGTTGCTCACCATG
TCAGGGCATCGCTGGTGCAGGAGTCCATCCAGACCAGATTTCGATCGGTT
GCCGATCTTCAGAATTGCCGCATCGACCCCTCGGAAACGTGCCTCCTTCG
TGGAGGTGCTCTTGAGACCTATTGGAACAACTCAATTGCGACTCGGTAAG
TTGCGCGGTGTTCGGAACTGTTGAAGAGTTTAATGGGCTTACAACTGACT
AACGGGTTCGTTTCTCTCACTGTAGCAACT
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Coding sequence (CDS) from alignment at NODE_2316_length_6104_cov_4.781473:1510..1839-

>Gcaud1888.t1 ID=Gcaud1888.t1|Name=Gcaud1888.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=151bp|location=Sequence derived from alignment at NODE_2316_length_6104_cov_4.781473:1510..1839- (Gracilaria caudata M_176_S67 male)
ATGACGGCATCGCTGGTGCAGGAGTCCATCCAGACCAGATTTCGATCGGT
TGCCGATCTTCAGAATTGCCGCATCGACCCCTCGGAAACGTGCCTCCTTC
GTGGAGGTGCTCTTGAGACCTATTGGAACAACTCAATTGCGACTCGCAAC
T
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