Gcaud1886.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1886.t1
Unique NameGcaud1886.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length172
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_238_length_34707_cov_4.869829contigNODE_238_length_34707_cov_4.869829:30606..31202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1886Gcaud1886Gracilaria caudata M_176_S67 malegeneNODE_238_length_34707_cov_4.869829 30606..31202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1886.t1Gcaud1886.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_238_length_34707_cov_4.869829 30606..31202 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1886.t1.start1Gcaud1886.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_238_length_34707_cov_4.869829 30606..30608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1886.t1.CDS1Gcaud1886.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_238_length_34707_cov_4.869829 30606..30707 +
Gcaud1886.t1.CDS2Gcaud1886.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_238_length_34707_cov_4.869829 30789..31202 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1886.t1.exon1Gcaud1886.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_238_length_34707_cov_4.869829 30606..30707 +
Gcaud1886.t1.exon2Gcaud1886.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_238_length_34707_cov_4.869829 30789..31202 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1886.t1.intron1Gcaud1886.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_238_length_34707_cov_4.869829 30708..30788 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1886.t1.stop1Gcaud1886.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_238_length_34707_cov_4.869829 31200..31202 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1886.t1 ID=Gcaud1886.t1|Name=Gcaud1886.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=172bp
MDAHRNTRRISNLPTPASPKPKPSSSRLIFNRSPTPGAISKARAKTTRNS
GRRNAKPCPDDSRRVDSRRLDSMDTDQASPVPAFDSNECPDDPDLVDIKA
RLEGHEQRICLILGNMHSEMAKCSNYMLECISIHLKKVIDAEKKKIPKIE
KLRATQRAANVHLQELRGNKR*
back to top

spliced messenger RNA

>Gcaud1886.t1 ID=Gcaud1886.t1|Name=Gcaud1886.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=516bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:30606..31202+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCTCACCGTAACACCCGCAGGATCTCCAACCTTCCAACTCCGGC
CAGCCCTAAGCCAAAACCGTCGTCTTCTAGACTTATATTTAATCGCAGCC
CAACTCCCGGTGCCATATCGAAGGCACGTGCGAAGACGACGAGGAACTCC
GGGAGGCGTAATGCTAAGCCGTGTCCCGATGATTCGCGTAGGGTTGATTC
CCGCCGGCTCGATTCCATGGATACGGATCAAGCCAGTCCAGTTCCTGCCT
TCGACAGCAACGAATGCCCAGACGATCCTGATCTGGTTGACATTAAGGCT
AGGCTGGAAGGGCACGAGCAGAGGATCTGCCTCATTCTCGGCAACATGCA
TAGCGAGATGGCCAAATGTTCAAATTACATGCTGGAATGTATCTCCATTC
ATCTGAAGAAGGTGATCGATGCCGAAAAGAAGAAGATACCGAAAATCGAG
AAGTTACGAGCAACTCAAAGGGCCGCTAATGTTCATCTTCAGGAGTTGCG
AGGTAACAAACGCTGA
back to top

protein sequence of Gcaud1886.t1

>Gcaud1886.t1 ID=Gcaud1886.t1|Name=Gcaud1886.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=172bp
MDAHRNTRRISNLPTPASPKPKPSSSRLIFNRSPTPGAISKARAKTTRNS
GRRNAKPCPDDSRRVDSRRLDSMDTDQASPVPAFDSNECPDDPDLVDIKA
RLEGHEQRICLILGNMHSEMAKCSNYMLECISIHLKKVIDAEKKKIPKIE
KLRATQRAANVHLQELRGNKR*
back to top

mRNA from alignment at NODE_238_length_34707_cov_4.869829:30606..31202+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1886.t1 ID=Gcaud1886.t1|Name=Gcaud1886.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:30606..31202+ (Gracilaria caudata M_176_S67 male)
ATGGATGCTCACCGTAACACCCGCAGGATCTCCAACCTTCCAACTCCGGC
CAGCCCTAAGCCAAAACCGTCGTCTTCTAGACTTATATTTAATCGCAGCC
CAGTATGTCTAACTCAAACGTCTTCTTTCTTCGCAATCCTCTTCTACATG
ACACTGACCACGAACTCTACTCCAAACAAACAGACTCCCGGTGCCATATC
GAAGGCACGTGCGAAGACGACGAGGAACTCCGGGAGGCGTAATGCTAAGC
CGTGTCCCGATGATTCGCGTAGGGTTGATTCCCGCCGGCTCGATTCCATG
GATACGGATCAAGCCAGTCCAGTTCCTGCCTTCGACAGCAACGAATGCCC
AGACGATCCTGATCTGGTTGACATTAAGGCTAGGCTGGAAGGGCACGAGC
AGAGGATCTGCCTCATTCTCGGCAACATGCATAGCGAGATGGCCAAATGT
TCAAATTACATGCTGGAATGTATCTCCATTCATCTGAAGAAGGTGATCGA
TGCCGAAAAGAAGAAGATACCGAAAATCGAGAAGTTACGAGCAACTCAAA
GGGCCGCTAATGTTCATCTTCAGGAGTTGCGAGGTAACAAACGCTGA
back to top

Coding sequence (CDS) from alignment at NODE_238_length_34707_cov_4.869829:30606..31202+

>Gcaud1886.t1 ID=Gcaud1886.t1|Name=Gcaud1886.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=516bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:30606..31202+ (Gracilaria caudata M_176_S67 male)
ATGGATGCTCACCGTAACACCCGCAGGATCTCCAACCTTCCAACTCCGGC
CAGCCCTAAGCCAAAACCGTCGTCTTCTAGACTTATATTTAATCGCAGCC
CAACTCCCGGTGCCATATCGAAGGCACGTGCGAAGACGACGAGGAACTCC
GGGAGGCGTAATGCTAAGCCGTGTCCCGATGATTCGCGTAGGGTTGATTC
CCGCCGGCTCGATTCCATGGATACGGATCAAGCCAGTCCAGTTCCTGCCT
TCGACAGCAACGAATGCCCAGACGATCCTGATCTGGTTGACATTAAGGCT
AGGCTGGAAGGGCACGAGCAGAGGATCTGCCTCATTCTCGGCAACATGCA
TAGCGAGATGGCCAAATGTTCAAATTACATGCTGGAATGTATCTCCATTC
ATCTGAAGAAGGTGATCGATGCCGAAAAGAAGAAGATACCGAAAATCGAG
AAGTTACGAGCAACTCAAAGGGCCGCTAATGTTCATCTTCAGGAGTTGCG
AGGTAACAAACGCTGA
back to top