Gcaud1884.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1884.t1
Unique Name	Gcaud1884.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	567

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_238_length_34707_cov_4.869829	contig	NODE_238_length_34707_cov_4.869829:24884..28018 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	179408.Osc7112_1725
PFAMs	NAD_binding_10
Max annot lvl	1117\|Cyanobacteria
Evalue	2.01e-28
EggNOG OGs	COG0702@1\|root,COG0702@2\|Bacteria,1G22R@1117\|Cyanobacteria,1H8U1@1150\|Oscillatoriales
Description	NmrA-like family
COG category	GM

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1884	Gcaud1884	Gracilaria caudata M_176_S67 male	gene	NODE_238_length_34707_cov_4.869829 24884..28018 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1884.t1	Gcaud1884.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_238_length_34707_cov_4.869829 24884..28018 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1884.t1.start1	Gcaud1884.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_238_length_34707_cov_4.869829 24884..24886 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1884.t1.CDS1	Gcaud1884.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_238_length_34707_cov_4.869829 24884..25630 +
Gcaud1884.t1.CDS2	Gcaud1884.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_238_length_34707_cov_4.869829 26926..27022 +
Gcaud1884.t1.CDS3	Gcaud1884.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_238_length_34707_cov_4.869829 27099..27142 +
Gcaud1884.t1.CDS4	Gcaud1884.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_238_length_34707_cov_4.869829 27206..28018 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1884.t1.exon1	Gcaud1884.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_238_length_34707_cov_4.869829 24884..25630 +
Gcaud1884.t1.exon2	Gcaud1884.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_238_length_34707_cov_4.869829 26926..27022 +
Gcaud1884.t1.exon3	Gcaud1884.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_238_length_34707_cov_4.869829 27099..27142 +
Gcaud1884.t1.exon4	Gcaud1884.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_238_length_34707_cov_4.869829 27206..28018 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1884.t1.intron1	Gcaud1884.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_238_length_34707_cov_4.869829 25631..26925 +
Gcaud1884.t1.intron2	Gcaud1884.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_238_length_34707_cov_4.869829 27023..27098 +
Gcaud1884.t1.intron3	Gcaud1884.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_238_length_34707_cov_4.869829 27143..27205 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1884.t1.stop1	Gcaud1884.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_238_length_34707_cov_4.869829 28016..28018 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_238_length_34707_cov_4.869829:24884..28018+
coding sequence from alignment at NODE_238_length_34707_cov_4.869829:24884..28018+

mRNA sequence

>Gcaud1884.t1 ID=Gcaud1884.t1|Name=Gcaud1884.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=567bp
MKSINFVSPFIAKGHPSRSHPIGPRIQLCAKVSSPPADILVVAANRGLGA
HLCRALRDADNLHTTHRPCSATSSEQEQASTTHALDALDGSAAEALFQSL
KPRTVVSCIGGEPGALELPDFEGNKNLIDAARRASVRHFVLISALGAGNS
EGSVPFQVMDTLRPLLLEKSRAEAYLKKTPDMEWTIVRPAPIVDGKGGKP
VATEDVSCYGTITRPDLAGVVKRILASEKAKNKTLHVVDRTGLLIVAPYS
WLPPSVATVTDNSTGSKIYIVGCVHGSNFSANDVCQVLDRTDPDAIVLEL
CEPRLKALRKTIAKKDEGSQYAANIGARTKKSFAQLSKSFGGRGPAIVAL
VLEKVYEFQTLVGIDPGIEFVEPIVRFPPNRIICGDVLARDTVNALFRVF
AAPFRSLNDCFSSVVDIFNRVMFPPQGGVQMLLVFLRSPGRLLELLRLIF
PASLVAILIGLVGNAGAFAFDMTPIGASVSHPVFAASLASLSSLVDSLLL
AYVSVSLLRFTKVLIADRDKVLSESVLNTLSSFRKGQGAPVTVCVVVGLL
HVNGILRILQKRIESV*

spliced messenger RNA

>Gcaud1884.t1 ID=Gcaud1884.t1|Name=Gcaud1884.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1701bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:24884..28018+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCAATAAATTTCGTGTCCCCGTTCATAGCAAAAGGTCACCCTTC
CCGATCTCATCCCATAGGCCCCCGCATTCAACTATGCGCCAAAGTCTCGT
CTCCACCTGCAGACATACTGGTTGTAGCAGCCAATCGTGGACTCGGAGCA
CATCTATGTCGTGCGTTACGGGATGCAGATAATCTGCACACAACGCATCG
ACCCTGCAGTGCAACCTCTTCGGAACAAGAACAAGCATCAACCACACATG
CACTTGACGCGCTAGATGGCTCGGCTGCAGAAGCGTTATTTCAGAGTTTG
AAACCTCGCACGGTTGTGTCATGCATAGGTGGAGAGCCTGGAGCACTAGA
ACTGCCAGACTTTGAAGGAAACAAGAATCTCATCGACGCAGCTAGGCGAG
CAAGCGTTCGACATTTCGTGCTCATCTCAGCATTGGGTGCGGGCAACAGC
GAAGGTAGCGTGCCATTCCAAGTGATGGACACCCTGCGCCCACTACTCCT
CGAAAAGAGCCGCGCAGAAGCATACCTAAAAAAAACTCCCGACATGGAAT
GGACCATCGTCAGGCCAGCACCGATTGTGGATGGTAAGGGCGGAAAACCT
GTTGCTACAGAAGATGTCAGCTGTTACGGAACGATTACGCGACCCGATTT
AGCAGGTGTGGTGAAAAGAATTCTCGCCAGTGAGAAGGCAAAGAATAAGA
CGTTGCATGTGGTGGATAGGACTGGCTTGCTTATCGTGGCTCCGTATTCA
TGGCTTCCGCCTAGCGTTGCGACTGTAACCGACAATTCGACTGGCTCAAA
GATATACATTGTTGGCTGTGTTCATGGGTCAAACTTTAGTGCGAATGATG
TATGTCAGGTTTTGGACAGAACTGATCCAGACGCCATCGTTTTGGAACTG
TGTGAACCTCGTTTGAAAGCACTTCGGAAGACTATAGCTAAAAAAGATGA
AGGTTCTCAGTACGCTGCGAACATAGGGGCCAGAACAAAGAAGTCCTTCG
CGCAGTTGTCGAAATCATTTGGAGGTCGTGGTCCTGCAATCGTCGCTCTT
GTTCTTGAAAAAGTATATGAATTCCAAACGCTGGTGGGTATCGATCCAGG
AATAGAATTCGTTGAGCCTATTGTAAGGTTCCCTCCTAACCGTATTATAT
GTGGTGACGTTTTGGCAAGAGATACCGTTAACGCATTGTTCAGGGTATTT
GCAGCACCATTTCGTTCGCTGAATGACTGTTTTTCATCCGTTGTTGACAT
TTTCAACAGAGTGATGTTTCCACCTCAGGGCGGTGTGCAAATGCTTTTGG
TTTTCTTAAGAAGTCCGGGACGTCTTCTGGAACTTTTGAGATTGATATTC
CCAGCTTCCTTGGTTGCAATTTTGATCGGTTTGGTAGGAAATGCTGGTGC
TTTCGCGTTCGATATGACTCCCATTGGTGCTTCTGTTTCACATCCTGTGT
TTGCAGCGTCTCTAGCATCACTATCGTCGCTTGTAGATTCGCTGTTGCTC
GCTTACGTCAGTGTATCATTGCTTCGCTTTACAAAAGTTTTGATTGCGGA
TCGCGACAAGGTTCTTTCTGAGAGTGTTCTCAATACGCTCTCTAGCTTTC
GGAAAGGCCAAGGAGCTCCTGTAACAGTCTGTGTTGTTGTCGGTCTTCTT
CATGTGAACGGCATCTTGAGGATTTTACAGAAGCGAATTGAGAGTGTATA
A

protein sequence of Gcaud1884.t1

>Gcaud1884.t1 ID=Gcaud1884.t1|Name=Gcaud1884.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=567bp
MKSINFVSPFIAKGHPSRSHPIGPRIQLCAKVSSPPADILVVAANRGLGA
HLCRALRDADNLHTTHRPCSATSSEQEQASTTHALDALDGSAAEALFQSL
KPRTVVSCIGGEPGALELPDFEGNKNLIDAARRASVRHFVLISALGAGNS
EGSVPFQVMDTLRPLLLEKSRAEAYLKKTPDMEWTIVRPAPIVDGKGGKP
VATEDVSCYGTITRPDLAGVVKRILASEKAKNKTLHVVDRTGLLIVAPYS
WLPPSVATVTDNSTGSKIYIVGCVHGSNFSANDVCQVLDRTDPDAIVLEL
CEPRLKALRKTIAKKDEGSQYAANIGARTKKSFAQLSKSFGGRGPAIVAL
VLEKVYEFQTLVGIDPGIEFVEPIVRFPPNRIICGDVLARDTVNALFRVF
AAPFRSLNDCFSSVVDIFNRVMFPPQGGVQMLLVFLRSPGRLLELLRLIF
PASLVAILIGLVGNAGAFAFDMTPIGASVSHPVFAASLASLSSLVDSLLL
AYVSVSLLRFTKVLIADRDKVLSESVLNTLSSFRKGQGAPVTVCVVVGLL
HVNGILRILQKRIESV*

mRNA from alignment at NODE_238_length_34707_cov_4.869829:24884..28018+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1884.t1 ID=Gcaud1884.t1|Name=Gcaud1884.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3135bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:24884..28018+ (Gracilaria caudata M_176_S67 male)
ATGAAGTCAATAAATTTCGTGTCCCCGTTCATAGCAAAAGGTCACCCTTC
CCGATCTCATCCCATAGGCCCCCGCATTCAACTATGCGCCAAAGTCTCGT
CTCCACCTGCAGACATACTGGTTGTAGCAGCCAATCGTGGACTCGGAGCA
CATCTATGTCGTGCGTTACGGGATGCAGATAATCTGCACACAACGCATCG
ACCCTGCAGTGCAACCTCTTCGGAACAAGAACAAGCATCAACCACACATG
CACTTGACGCGCTAGATGGCTCGGCTGCAGAAGCGTTATTTCAGAGTTTG
AAACCTCGCACGGTTGTGTCATGCATAGGTGGAGAGCCTGGAGCACTAGA
ACTGCCAGACTTTGAAGGAAACAAGAATCTCATCGACGCAGCTAGGCGAG
CAAGCGTTCGACATTTCGTGCTCATCTCAGCATTGGGTGCGGGCAACAGC
GAAGGTAGCGTGCCATTCCAAGTGATGGACACCCTGCGCCCACTACTCCT
CGAAAAGAGCCGCGCAGAAGCATACCTAAAAAAAACTCCCGACATGGAAT
GGACCATCGTCAGGCCAGCACCGATTGTGGATGGTAAGGGCGGAAAACCT
GTTGCTACAGAAGATGTCAGCTGTTACGGAACGATTACGCGACCCGATTT
AGCAGGTGTGGTGAAAAGAATTCTCGCCAGTGAGAAGGCAAAGAATAAGA
CGTTGCATGTGGTGGATAGGACTGGCTTGCTTATCGTGGCTCCGTATGTA
CGCCCTCTGGAATTCTGGGAACCTCTGCCGTTTACCGAATTCGAGATGTG
AGATCCAGTAAAAGAAGTTTTTCGATGTCGGTCCATCAGCAGTATGAGCT
CAGGGGAATTGAGATCCTTGATTTCGCTTGTTTGCTTAAGAAATGATCAA
GGTTTGATCACATTCAGAAAACTTTGAGATGCATGGAGGGTACGAAGGGC
ATCACCATCCCGAACAGATGCATGCAACTGGCCTACGCATATCTTCTACA
TCCACGATGAAGGCATGAGACACGATGGTGTGCCCTTGTTTTTAGGGGGG
GTAGAGTTCTTTAGATTGTACCCAATGGTTTCGCCTTACACATCAATAAT
TCTCCGTACCCGGCCATGAGCCAGTCTCACACAGTACAATCTACTATAAC
TGTTGTTTCCGCTTCGACTAGAGTGCCGTTTGTTCAATATTGGTTGCTGG
ACAGCTTCTTTGAGGATATTTGGGGTGCATTTGCAAGCGAAACAACGCGA
GACGCGGTGTATCGTCGTTGAAGAGTTGCATAAATGCGATAAATTATGAG
CATGGCGCGTTGGTAGATGTTTCTTGCCATGAACCGTGTGAGAAGTCTCT
CATTCTAGGCATAGTTGCATAGAGTTGTAAGCCTTTCCAAAAGTCGCATG
GTATCGGCCTTGGTCGTCGTCACTGCGGATACATCATCCGTCGATGGGAA
GCAAGATGATATCATGATGATCTCTCCAGTCCATGACAAACGCCGTCGGT
TTGCCCCCTTGTGACTGGCCGTCAATTGTATAATCAATCAAGGTCATAGT
TTTGTGTTGTGGCCACGTGTCCATATTTTGTGCTCATTTCGAGTCGTGCG
TGACATGAGATATCTACCCTTCGTACGAACACGTGAACGAAACTCTTATC
GCAGCTCAACGTTTACATCAATCTCCCAACGATTTGTCATCAAACCAGTG
ACTCCATTCTCTCAAACGCCTTGGGACTTCGTGCTGATTCTTTTCGCTGA
TGATAAGAGGGCTAACCCTCTTAAACCTCTTACCGTCAAACGGTATTATC
AACCGATAAAACAGGCCCCATTCGGGAAAGTCACCTTTCGAATCTTAAAA
GGTTTCCAGGCTTATCCGATGGCGAAAGCTTTTGTAACTTCTTTCCCATG
TCTTCATGAAAAAAGGTCAGCTTTCTGGGGCGAAACTATAGAAGGGTGCA
AACAGAATATTTCCAAAGGTTTTTCGACAAGCTTCACTGAGCCATCACAT
AGACGCCGTCGAAAATACTTTTCTCCAACATGTTTGCGAGAGTCATGGCT
TCCGCCTAGCGTTGCGACTGTAACCGACAATTCGACTGGCTCAAAGATAT
ACATTGTTGGCTGTGTTCATGGGTCAAACTTTAGTGCGAGTGCGTATCAG
AACCTCACCTCAAGCACAATCACTCATGAAGTTTCATTGCTGACCACTCT
GATTCTTCTATGCAGATGATGTATGTCAGGTTTTGGACAGAACTGATCCA
GACGCCATCGTACGTTACTCCTCTTATTACACTCCAGTGTTTTTGTGCAT
AGTTTCTAACAAACCTGTTCAGGTTTTGGAACTGTGTGAACCTCGTTTGA
AAGCACTTCGGAAGACTATAGCTAAAAAAGATGAAGGTTCTCAGTACGCT
GCGAACATAGGGGCCAGAACAAAGAAGTCCTTCGCGCAGTTGTCGAAATC
ATTTGGAGGTCGTGGTCCTGCAATCGTCGCTCTTGTTCTTGAAAAAGTAT
ATGAATTCCAAACGCTGGTGGGTATCGATCCAGGAATAGAATTCGTTGAG
CCTATTGTAAGGTTCCCTCCTAACCGTATTATATGTGGTGACGTTTTGGC
AAGAGATACCGTTAACGCATTGTTCAGGGTATTTGCAGCACCATTTCGTT
CGCTGAATGACTGTTTTTCATCCGTTGTTGACATTTTCAACAGAGTGATG
TTTCCACCTCAGGGCGGTGTGCAAATGCTTTTGGTTTTCTTAAGAAGTCC
GGGACGTCTTCTGGAACTTTTGAGATTGATATTCCCAGCTTCCTTGGTTG
CAATTTTGATCGGTTTGGTAGGAAATGCTGGTGCTTTCGCGTTCGATATG
ACTCCCATTGGTGCTTCTGTTTCACATCCTGTGTTTGCAGCGTCTCTAGC
ATCACTATCGTCGCTTGTAGATTCGCTGTTGCTCGCTTACGTCAGTGTAT
CATTGCTTCGCTTTACAAAAGTTTTGATTGCGGATCGCGACAAGGTTCTT
TCTGAGAGTGTTCTCAATACGCTCTCTAGCTTTCGGAAAGGCCAAGGAGC
TCCTGTAACAGTCTGTGTTGTTGTCGGTCTTCTTCATGTGAACGGCATCT
TGAGGATTTTACAGAAGCGAATTGAGAGTGTATAA

Coding sequence (CDS) from alignment at NODE_238_length_34707_cov_4.869829:24884..28018+

>Gcaud1884.t1 ID=Gcaud1884.t1|Name=Gcaud1884.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1701bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:24884..28018+ (Gracilaria caudata M_176_S67 male)
ATGAAGTCAATAAATTTCGTGTCCCCGTTCATAGCAAAAGGTCACCCTTC
CCGATCTCATCCCATAGGCCCCCGCATTCAACTATGCGCCAAAGTCTCGT
CTCCACCTGCAGACATACTGGTTGTAGCAGCCAATCGTGGACTCGGAGCA
CATCTATGTCGTGCGTTACGGGATGCAGATAATCTGCACACAACGCATCG
ACCCTGCAGTGCAACCTCTTCGGAACAAGAACAAGCATCAACCACACATG
CACTTGACGCGCTAGATGGCTCGGCTGCAGAAGCGTTATTTCAGAGTTTG
AAACCTCGCACGGTTGTGTCATGCATAGGTGGAGAGCCTGGAGCACTAGA
ACTGCCAGACTTTGAAGGAAACAAGAATCTCATCGACGCAGCTAGGCGAG
CAAGCGTTCGACATTTCGTGCTCATCTCAGCATTGGGTGCGGGCAACAGC
GAAGGTAGCGTGCCATTCCAAGTGATGGACACCCTGCGCCCACTACTCCT
CGAAAAGAGCCGCGCAGAAGCATACCTAAAAAAAACTCCCGACATGGAAT
GGACCATCGTCAGGCCAGCACCGATTGTGGATGGTAAGGGCGGAAAACCT
GTTGCTACAGAAGATGTCAGCTGTTACGGAACGATTACGCGACCCGATTT
AGCAGGTGTGGTGAAAAGAATTCTCGCCAGTGAGAAGGCAAAGAATAAGA
CGTTGCATGTGGTGGATAGGACTGGCTTGCTTATCGTGGCTCCGTATTCA
TGGCTTCCGCCTAGCGTTGCGACTGTAACCGACAATTCGACTGGCTCAAA
GATATACATTGTTGGCTGTGTTCATGGGTCAAACTTTAGTGCGAATGATG
TATGTCAGGTTTTGGACAGAACTGATCCAGACGCCATCGTTTTGGAACTG
TGTGAACCTCGTTTGAAAGCACTTCGGAAGACTATAGCTAAAAAAGATGA
AGGTTCTCAGTACGCTGCGAACATAGGGGCCAGAACAAAGAAGTCCTTCG
CGCAGTTGTCGAAATCATTTGGAGGTCGTGGTCCTGCAATCGTCGCTCTT
GTTCTTGAAAAAGTATATGAATTCCAAACGCTGGTGGGTATCGATCCAGG
AATAGAATTCGTTGAGCCTATTGTAAGGTTCCCTCCTAACCGTATTATAT
GTGGTGACGTTTTGGCAAGAGATACCGTTAACGCATTGTTCAGGGTATTT
GCAGCACCATTTCGTTCGCTGAATGACTGTTTTTCATCCGTTGTTGACAT
TTTCAACAGAGTGATGTTTCCACCTCAGGGCGGTGTGCAAATGCTTTTGG
TTTTCTTAAGAAGTCCGGGACGTCTTCTGGAACTTTTGAGATTGATATTC
CCAGCTTCCTTGGTTGCAATTTTGATCGGTTTGGTAGGAAATGCTGGTGC
TTTCGCGTTCGATATGACTCCCATTGGTGCTTCTGTTTCACATCCTGTGT
TTGCAGCGTCTCTAGCATCACTATCGTCGCTTGTAGATTCGCTGTTGCTC
GCTTACGTCAGTGTATCATTGCTTCGCTTTACAAAAGTTTTGATTGCGGA
TCGCGACAAGGTTCTTTCTGAGAGTGTTCTCAATACGCTCTCTAGCTTTC
GGAAAGGCCAAGGAGCTCCTGTAACAGTCTGTGTTGTTGTCGGTCTTCTT
CATGTGAACGGCATCTTGAGGATTTTACAGAAGCGAATTGAGAGTGTATA
A