Gcaud1871.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1871.t1
Unique NameGcaud1871.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1195_length_12786_cov_4.314848contigNODE_1195_length_12786_cov_4.314848:8295..9404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003290851.1
PFAMsGlycolytic
Max annot lvl554915|Amoebozoa
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01623
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00003,M00165,M00167
GOsGO:0003674,GO:0003824,GO:0004332,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006000,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016830,GO:0016832,GO:0017144,GO:0018130,GO:0019318,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue1.96e-106
EggNOG OGsCOG3588@1|root,KOG1557@2759|Eukaryota,3XAVJ@554915|Amoebozoa
EC4.1.2.13
DescriptionFructose-bisphosphate aldolase class-I
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1871Gcaud1871Gracilaria caudata M_176_S67 malegeneNODE_1195_length_12786_cov_4.314848 8295..9404 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1871.t1.start1Gcaud1871.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1195_length_12786_cov_4.314848 8295..8297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1871.t1.CDS1Gcaud1871.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1195_length_12786_cov_4.314848 8295..9404 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1871.t1.exon1Gcaud1871.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1195_length_12786_cov_4.314848 8295..9404 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1871.t1.stop1Gcaud1871.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1195_length_12786_cov_4.314848 9402..9404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1871.t1Gcaud1871.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1195_length_12786_cov_4.314848 8295..9404 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1871.t1 ID=Gcaud1871.t1|Name=Gcaud1871.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=370bp
MQDNAYEEVLRATAKHLTQRGKGILAADESTGTIGKRLATLSLQNSEQTR
RSLREIFICAPGNEQAYAGVILYKETLYQSDSNGNSFVSILNAKNILAGV
KVDTGLRAVPESAGETTTDGLDDLSERCEMYYKQGASFAKWRAALRIDVE
RALPSDDVVRKNAIQLAKYARIAQSKGLLPIVEPEILIDGTHGQGVSAAV
AEKVIGAVYEALHEEQVAVELTLLKPMMIMPGVSNIHRKTVSAEKVASET
LKVMKKVVPKQVPGIMFLSGGMSEQEATTNLNALNILGDEQQVPWCLSFS
FGRALQHSAMSVWNGQACNMTRAKEMATKVARVNAQAQLGKYNGNHPALR
SDSLYEGFRGWKGKQPQNA*
back to top

spliced messenger RNA

>Gcaud1871.t1 ID=Gcaud1871.t1|Name=Gcaud1871.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at NODE_1195_length_12786_cov_4.314848:8295..9404+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGATAACGCATACGAGGAGGTTCTGAGGGCTACGGCCAAGCATTT
GACGCAACGCGGAAAGGGAATTCTGGCGGCGGATGAATCAACAGGAACAA
TAGGAAAACGACTGGCGACACTATCACTGCAAAACTCCGAACAAACGAGA
AGATCGCTGCGAGAAATATTCATCTGCGCGCCGGGAAACGAACAGGCTTA
CGCAGGAGTGATTCTATACAAGGAAACGTTGTACCAATCAGACAGCAATG
GAAATTCGTTCGTATCCATTCTGAACGCGAAGAACATCTTGGCGGGCGTG
AAAGTTGATACTGGGTTGAGAGCGGTGCCAGAATCGGCAGGAGAGACGAC
TACCGATGGTTTGGATGACTTGTCGGAACGATGTGAAATGTATTATAAAC
AAGGTGCGAGTTTTGCAAAATGGAGAGCCGCTTTGAGAATCGACGTTGAA
AGAGCACTTCCTAGCGATGATGTGGTGCGTAAGAACGCGATACAGTTGGC
GAAATACGCGCGCATTGCACAGAGTAAGGGATTGTTACCCATTGTGGAAC
CGGAAATCCTGATCGACGGTACTCATGGACAGGGGGTGAGCGCAGCAGTA
GCGGAGAAAGTGATTGGTGCGGTGTATGAGGCCTTGCATGAAGAACAAGT
TGCAGTGGAATTGACGTTGCTCAAACCAATGATGATCATGCCTGGTGTGT
CCAACATACATCGAAAAACTGTGAGCGCTGAAAAAGTGGCGAGTGAAACA
CTGAAGGTGATGAAGAAAGTGGTTCCCAAACAAGTGCCCGGCATAATGTT
TCTGTCTGGTGGAATGAGCGAACAAGAAGCCACCACCAATCTTAACGCTC
TGAACATTCTTGGTGACGAGCAACAGGTACCATGGTGCCTCTCGTTCAGC
TTTGGACGTGCGTTACAACACTCGGCAATGAGCGTGTGGAATGGACAGGC
TTGTAACATGACACGCGCAAAGGAAATGGCCACCAAAGTGGCGCGCGTGA
ATGCCCAGGCGCAACTCGGAAAGTACAATGGTAATCATCCGGCGTTACGA
AGCGACAGTCTGTACGAGGGCTTCCGCGGTTGGAAAGGAAAGCAACCGCA
GAACGCGTGA
back to top

protein sequence of Gcaud1871.t1

>Gcaud1871.t1 ID=Gcaud1871.t1|Name=Gcaud1871.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=370bp
MQDNAYEEVLRATAKHLTQRGKGILAADESTGTIGKRLATLSLQNSEQTR
RSLREIFICAPGNEQAYAGVILYKETLYQSDSNGNSFVSILNAKNILAGV
KVDTGLRAVPESAGETTTDGLDDLSERCEMYYKQGASFAKWRAALRIDVE
RALPSDDVVRKNAIQLAKYARIAQSKGLLPIVEPEILIDGTHGQGVSAAV
AEKVIGAVYEALHEEQVAVELTLLKPMMIMPGVSNIHRKTVSAEKVASET
LKVMKKVVPKQVPGIMFLSGGMSEQEATTNLNALNILGDEQQVPWCLSFS
FGRALQHSAMSVWNGQACNMTRAKEMATKVARVNAQAQLGKYNGNHPALR
SDSLYEGFRGWKGKQPQNA*
back to top

mRNA from alignment at NODE_1195_length_12786_cov_4.314848:8295..9404+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1871.t1 ID=Gcaud1871.t1|Name=Gcaud1871.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at NODE_1195_length_12786_cov_4.314848:8295..9404+ (Gracilaria caudata M_176_S67 male)
ATGCAAGATAACGCATACGAGGAGGTTCTGAGGGCTACGGCCAAGCATTT
GACGCAACGCGGAAAGGGAATTCTGGCGGCGGATGAATCAACAGGAACAA
TAGGAAAACGACTGGCGACACTATCACTGCAAAACTCCGAACAAACGAGA
AGATCGCTGCGAGAAATATTCATCTGCGCGCCGGGAAACGAACAGGCTTA
CGCAGGAGTGATTCTATACAAGGAAACGTTGTACCAATCAGACAGCAATG
GAAATTCGTTCGTATCCATTCTGAACGCGAAGAACATCTTGGCGGGCGTG
AAAGTTGATACTGGGTTGAGAGCGGTGCCAGAATCGGCAGGAGAGACGAC
TACCGATGGTTTGGATGACTTGTCGGAACGATGTGAAATGTATTATAAAC
AAGGTGCGAGTTTTGCAAAATGGAGAGCCGCTTTGAGAATCGACGTTGAA
AGAGCACTTCCTAGCGATGATGTGGTGCGTAAGAACGCGATACAGTTGGC
GAAATACGCGCGCATTGCACAGAGTAAGGGATTGTTACCCATTGTGGAAC
CGGAAATCCTGATCGACGGTACTCATGGACAGGGGGTGAGCGCAGCAGTA
GCGGAGAAAGTGATTGGTGCGGTGTATGAGGCCTTGCATGAAGAACAAGT
TGCAGTGGAATTGACGTTGCTCAAACCAATGATGATCATGCCTGGTGTGT
CCAACATACATCGAAAAACTGTGAGCGCTGAAAAAGTGGCGAGTGAAACA
CTGAAGGTGATGAAGAAAGTGGTTCCCAAACAAGTGCCCGGCATAATGTT
TCTGTCTGGTGGAATGAGCGAACAAGAAGCCACCACCAATCTTAACGCTC
TGAACATTCTTGGTGACGAGCAACAGGTACCATGGTGCCTCTCGTTCAGC
TTTGGACGTGCGTTACAACACTCGGCAATGAGCGTGTGGAATGGACAGGC
TTGTAACATGACACGCGCAAAGGAAATGGCCACCAAAGTGGCGCGCGTGA
ATGCCCAGGCGCAACTCGGAAAGTACAATGGTAATCATCCGGCGTTACGA
AGCGACAGTCTGTACGAGGGCTTCCGCGGTTGGAAAGGAAAGCAACCGCA
GAACGCGTGA
back to top

Coding sequence (CDS) from alignment at NODE_1195_length_12786_cov_4.314848:8295..9404+

>Gcaud1871.t1 ID=Gcaud1871.t1|Name=Gcaud1871.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1110bp|location=Sequence derived from alignment at NODE_1195_length_12786_cov_4.314848:8295..9404+ (Gracilaria caudata M_176_S67 male)
ATGCAAGATAACGCATACGAGGAGGTTCTGAGGGCTACGGCCAAGCATTT
GACGCAACGCGGAAAGGGAATTCTGGCGGCGGATGAATCAACAGGAACAA
TAGGAAAACGACTGGCGACACTATCACTGCAAAACTCCGAACAAACGAGA
AGATCGCTGCGAGAAATATTCATCTGCGCGCCGGGAAACGAACAGGCTTA
CGCAGGAGTGATTCTATACAAGGAAACGTTGTACCAATCAGACAGCAATG
GAAATTCGTTCGTATCCATTCTGAACGCGAAGAACATCTTGGCGGGCGTG
AAAGTTGATACTGGGTTGAGAGCGGTGCCAGAATCGGCAGGAGAGACGAC
TACCGATGGTTTGGATGACTTGTCGGAACGATGTGAAATGTATTATAAAC
AAGGTGCGAGTTTTGCAAAATGGAGAGCCGCTTTGAGAATCGACGTTGAA
AGAGCACTTCCTAGCGATGATGTGGTGCGTAAGAACGCGATACAGTTGGC
GAAATACGCGCGCATTGCACAGAGTAAGGGATTGTTACCCATTGTGGAAC
CGGAAATCCTGATCGACGGTACTCATGGACAGGGGGTGAGCGCAGCAGTA
GCGGAGAAAGTGATTGGTGCGGTGTATGAGGCCTTGCATGAAGAACAAGT
TGCAGTGGAATTGACGTTGCTCAAACCAATGATGATCATGCCTGGTGTGT
CCAACATACATCGAAAAACTGTGAGCGCTGAAAAAGTGGCGAGTGAAACA
CTGAAGGTGATGAAGAAAGTGGTTCCCAAACAAGTGCCCGGCATAATGTT
TCTGTCTGGTGGAATGAGCGAACAAGAAGCCACCACCAATCTTAACGCTC
TGAACATTCTTGGTGACGAGCAACAGGTACCATGGTGCCTCTCGTTCAGC
TTTGGACGTGCGTTACAACACTCGGCAATGAGCGTGTGGAATGGACAGGC
TTGTAACATGACACGCGCAAAGGAAATGGCCACCAAAGTGGCGCGCGTGA
ATGCCCAGGCGCAACTCGGAAAGTACAATGGTAATCATCCGGCGTTACGA
AGCGACAGTCTGTACGAGGGCTTCCGCGGTTGGAAAGGAAAGCAACCGCA
GAACGCGTGA
back to top