Gcaud1870.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1870.t1
Unique NameGcaud1870.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1195_length_12786_cov_4.314848contigNODE_1195_length_12786_cov_4.314848:4302..4880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1047171.Mycgr3P106188
PFAMsTim17
Max annot lvl4751|Fungi
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0030150,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0098573,GO:0098796,GO:0098798,GO:0098800,GO:1990542
Evalue7.71e-07
EggNOG OGs2C8WE@1|root,2S81D@2759|Eukaryota,3A2AJ@33154|Opisthokonta,3P2XV@4751|Fungi,3QV5W@4890|Ascomycota,201S4@147541|Dothideomycetes,3MJN0@451867|Dothideomycetidae
DescriptionTim17/Tim22/Tim23/Pmp24 family
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1870Gcaud1870Gracilaria caudata M_176_S67 malegeneNODE_1195_length_12786_cov_4.314848 4302..4880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1870.t1Gcaud1870.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1195_length_12786_cov_4.314848 4302..4880 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1870.t1.stop1Gcaud1870.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1195_length_12786_cov_4.314848 4302..4304 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1870.t1.CDS1Gcaud1870.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1195_length_12786_cov_4.314848 4302..4598 -
Gcaud1870.t1.CDS2Gcaud1870.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1195_length_12786_cov_4.314848 4671..4880 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1870.t1.exon1Gcaud1870.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1195_length_12786_cov_4.314848 4302..4598 -
Gcaud1870.t1.exon2Gcaud1870.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1195_length_12786_cov_4.314848 4671..4880 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1870.t1.intron1Gcaud1870.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1195_length_12786_cov_4.314848 4599..4670 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1870.t1.start1Gcaud1870.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1195_length_12786_cov_4.314848 4878..4880 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1870.t1 ID=Gcaud1870.t1|Name=Gcaud1870.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=169bp
MGEEGVLDAAKEGALSGLYFGATVGAIRAFLYGDAAPAAATTTAPAPAAP
KQPPSVTSLATSALRAARPTPLSMLVSTTVIYSGLGAVYLGTGKFAHDVR
DKDDMWNSVIGGVVAGSLCGLRTGSFYISAGAAGSLAAVSALYHIFDGQF
GPQKDNPGIRRRRAVYQD*
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spliced messenger RNA

>Gcaud1870.t1 ID=Gcaud1870.t1|Name=Gcaud1870.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=507bp|location=Sequence derived from alignment at NODE_1195_length_12786_cov_4.314848:4302..4880- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGAAGAAGGCGTGTTAGACGCTGCCAAAGAAGGTGCTCTATCCGG
CCTCTACTTCGGCGCCACCGTCGGAGCAATTCGAGCATTCCTCTACGGCG
ATGCGGCACCCGCTGCCGCCACCACCACCGCGCCGGCTCCCGCAGCACCG
AAACAGCCTCCTTCCGTCACCTCCCTAGCGACAAGTGCGCTTCGTGCGGC
CCGTCCTACGCCTCTGTCGATGCTTGTTTCCACGACTGTGATCTATTCGG
GGTTGGGAGCTGTGTATCTTGGAACTGGGAAATTCGCGCATGATGTTCGG
GATAAGGATGATATGTGGAATAGCGTGATTGGTGGCGTTGTTGCTGGATC
ACTTTGTGGATTGAGAACAGGGTCTTTTTATATTAGTGCCGGCGCTGCGG
GCTCGCTTGCTGCTGTTTCTGCTTTGTATCATATATTCGATGGTCAGTTT
GGACCGCAGAAAGATAACCCTGGCATTCGGAGAAGACGAGCGGTGTATCA
GGATTGA
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protein sequence of Gcaud1870.t1

>Gcaud1870.t1 ID=Gcaud1870.t1|Name=Gcaud1870.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=169bp
MGEEGVLDAAKEGALSGLYFGATVGAIRAFLYGDAAPAAATTTAPAPAAP
KQPPSVTSLATSALRAARPTPLSMLVSTTVIYSGLGAVYLGTGKFAHDVR
DKDDMWNSVIGGVVAGSLCGLRTGSFYISAGAAGSLAAVSALYHIFDGQF
GPQKDNPGIRRRRAVYQD*
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mRNA from alignment at NODE_1195_length_12786_cov_4.314848:4302..4880-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1870.t1 ID=Gcaud1870.t1|Name=Gcaud1870.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=579bp|location=Sequence derived from alignment at NODE_1195_length_12786_cov_4.314848:4302..4880- (Gracilaria caudata M_176_S67 male)
ATGGGCGAAGAAGGCGTGTTAGACGCTGCCAAAGAAGGTGCTCTATCCGG
CCTCTACTTCGGCGCCACCGTCGGAGCAATTCGAGCATTCCTCTACGGCG
ATGCGGCACCCGCTGCCGCCACCACCACCGCGCCGGCTCCCGCAGCACCG
AAACAGCCTCCTTCCGTCACCTCCCTAGCGACAAGTGCGCTTCGTGCGGC
CCGTCCTACGGTACGTGTTCTATTTCCGTTTGATGCCCTCCTGCATTCAT
GTACATGATTTGATTGCTCACGCTTTTGAAAGCCTCTGTCGATGCTTGTT
TCCACGACTGTGATCTATTCGGGGTTGGGAGCTGTGTATCTTGGAACTGG
GAAATTCGCGCATGATGTTCGGGATAAGGATGATATGTGGAATAGCGTGA
TTGGTGGCGTTGTTGCTGGATCACTTTGTGGATTGAGAACAGGGTCTTTT
TATATTAGTGCCGGCGCTGCGGGCTCGCTTGCTGCTGTTTCTGCTTTGTA
TCATATATTCGATGGTCAGTTTGGACCGCAGAAAGATAACCCTGGCATTC
GGAGAAGACGAGCGGTGTATCAGGATTGA
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Coding sequence (CDS) from alignment at NODE_1195_length_12786_cov_4.314848:4302..4880-

>Gcaud1870.t1 ID=Gcaud1870.t1|Name=Gcaud1870.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=507bp|location=Sequence derived from alignment at NODE_1195_length_12786_cov_4.314848:4302..4880- (Gracilaria caudata M_176_S67 male)
ATGGGCGAAGAAGGCGTGTTAGACGCTGCCAAAGAAGGTGCTCTATCCGG
CCTCTACTTCGGCGCCACCGTCGGAGCAATTCGAGCATTCCTCTACGGCG
ATGCGGCACCCGCTGCCGCCACCACCACCGCGCCGGCTCCCGCAGCACCG
AAACAGCCTCCTTCCGTCACCTCCCTAGCGACAAGTGCGCTTCGTGCGGC
CCGTCCTACGCCTCTGTCGATGCTTGTTTCCACGACTGTGATCTATTCGG
GGTTGGGAGCTGTGTATCTTGGAACTGGGAAATTCGCGCATGATGTTCGG
GATAAGGATGATATGTGGAATAGCGTGATTGGTGGCGTTGTTGCTGGATC
ACTTTGTGGATTGAGAACAGGGTCTTTTTATATTAGTGCCGGCGCTGCGG
GCTCGCTTGCTGCTGTTTCTGCTTTGTATCATATATTCGATGGTCAGTTT
GGACCGCAGAAAGATAACCCTGGCATTCGGAGAAGACGAGCGGTGTATCA
GGATTGA
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