Gcaud1865.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1865.t1
Unique NameGcaud1865.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1057_length_14482_cov_4.222709contigNODE_1057_length_14482_cov_4.222709:2190..2897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX44572
PFAMsRuvX
Max annot lvl2759|Eukaryota
KEGG koko:K07447
Evalue3.16e-24
EggNOG OGs2E4SD@1|root,2SBMG@2759|Eukaryota
DescriptionHolliday junction resolvase
COG categoryS
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1865Gcaud1865Gracilaria caudata M_176_S67 malegeneNODE_1057_length_14482_cov_4.222709 2190..2897 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1865.t1.start1Gcaud1865.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1057_length_14482_cov_4.222709 2190..2192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1865.t1.CDS1Gcaud1865.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1057_length_14482_cov_4.222709 2190..2897 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1865.t1.exon1Gcaud1865.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1057_length_14482_cov_4.222709 2190..2897 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1865.t1.stop1Gcaud1865.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1057_length_14482_cov_4.222709 2895..2897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1865.t1Gcaud1865.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1057_length_14482_cov_4.222709 2190..2897 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1865.t1 ID=Gcaud1865.t1|Name=Gcaud1865.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=236bp
MESMSTTAFVPVCPTRFRAQFPRARTQRCQRDRIPLAARIGVRTLGVDYG
LRRVGLAISVGVAPRPLNRIDHRNNPKKVAQDVAQVASRSLAEAIVVGMP
VDLYGDEKEQAITTRHFVQELVHSAPWAEIMVLNETFTSKDAAEQLRDSG
ITGRNIRDFVDCESAVMLLQRHFSEKDDYRSEVVHRPIPVTAEEHQTEER
MTFAEWKKQTMQRAAQSVHFRKKNKKMKLKGGIMN*
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spliced messenger RNA

>Gcaud1865.t1 ID=Gcaud1865.t1|Name=Gcaud1865.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_1057_length_14482_cov_4.222709:2190..2897+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCCATGAGCACTACGGCTTTTGTACCCGTATGTCCAACAAGATT
TAGGGCACAATTTCCACGAGCGCGAACTCAACGATGCCAAAGGGACAGAA
TACCCCTTGCAGCTCGAATTGGCGTTCGTACTCTGGGTGTCGATTATGGT
TTGCGTCGAGTCGGTCTAGCCATCTCTGTGGGTGTGGCACCACGACCACT
TAATCGCATCGACCACAGGAACAATCCAAAGAAAGTAGCACAAGATGTGG
CACAAGTCGCCAGCCGTAGCCTCGCAGAGGCGATTGTAGTGGGGATGCCA
GTAGACCTTTACGGAGATGAAAAGGAGCAGGCTATCACGACCCGTCATTT
CGTTCAGGAACTGGTGCATTCTGCCCCATGGGCAGAGATCATGGTACTCA
ATGAGACTTTCACTTCAAAGGACGCTGCAGAACAGCTTCGTGATTCAGGG
ATTACAGGACGCAACATTAGAGATTTCGTCGATTGCGAATCGGCAGTGAT
GCTTTTGCAACGGCACTTCTCAGAGAAGGACGACTATAGATCAGAAGTGG
TGCATAGGCCCATACCTGTTACCGCTGAAGAACATCAAACTGAGGAAAGG
ATGACTTTCGCAGAGTGGAAGAAGCAGACAATGCAAAGGGCTGCGCAGAG
TGTTCACTTTAGGAAAAAGAATAAAAAGATGAAACTGAAAGGTGGAATCA
TGAACTAA
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protein sequence of Gcaud1865.t1

>Gcaud1865.t1 ID=Gcaud1865.t1|Name=Gcaud1865.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
MESMSTTAFVPVCPTRFRAQFPRARTQRCQRDRIPLAARIGVRTLGVDYG
LRRVGLAISVGVAPRPLNRIDHRNNPKKVAQDVAQVASRSLAEAIVVGMP
VDLYGDEKEQAITTRHFVQELVHSAPWAEIMVLNETFTSKDAAEQLRDSG
ITGRNIRDFVDCESAVMLLQRHFSEKDDYRSEVVHRPIPVTAEEHQTEER
MTFAEWKKQTMQRAAQSVHFRKKNKKMKLKGGIMN*
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mRNA from alignment at NODE_1057_length_14482_cov_4.222709:2190..2897+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1865.t1 ID=Gcaud1865.t1|Name=Gcaud1865.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_1057_length_14482_cov_4.222709:2190..2897+ (Gracilaria caudata M_176_S67 male)
ATGGAATCCATGAGCACTACGGCTTTTGTACCCGTATGTCCAACAAGATT
TAGGGCACAATTTCCACGAGCGCGAACTCAACGATGCCAAAGGGACAGAA
TACCCCTTGCAGCTCGAATTGGCGTTCGTACTCTGGGTGTCGATTATGGT
TTGCGTCGAGTCGGTCTAGCCATCTCTGTGGGTGTGGCACCACGACCACT
TAATCGCATCGACCACAGGAACAATCCAAAGAAAGTAGCACAAGATGTGG
CACAAGTCGCCAGCCGTAGCCTCGCAGAGGCGATTGTAGTGGGGATGCCA
GTAGACCTTTACGGAGATGAAAAGGAGCAGGCTATCACGACCCGTCATTT
CGTTCAGGAACTGGTGCATTCTGCCCCATGGGCAGAGATCATGGTACTCA
ATGAGACTTTCACTTCAAAGGACGCTGCAGAACAGCTTCGTGATTCAGGG
ATTACAGGACGCAACATTAGAGATTTCGTCGATTGCGAATCGGCAGTGAT
GCTTTTGCAACGGCACTTCTCAGAGAAGGACGACTATAGATCAGAAGTGG
TGCATAGGCCCATACCTGTTACCGCTGAAGAACATCAAACTGAGGAAAGG
ATGACTTTCGCAGAGTGGAAGAAGCAGACAATGCAAAGGGCTGCGCAGAG
TGTTCACTTTAGGAAAAAGAATAAAAAGATGAAACTGAAAGGTGGAATCA
TGAACTAA
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Coding sequence (CDS) from alignment at NODE_1057_length_14482_cov_4.222709:2190..2897+

>Gcaud1865.t1 ID=Gcaud1865.t1|Name=Gcaud1865.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=708bp|location=Sequence derived from alignment at NODE_1057_length_14482_cov_4.222709:2190..2897+ (Gracilaria caudata M_176_S67 male)
ATGGAATCCATGAGCACTACGGCTTTTGTACCCGTATGTCCAACAAGATT
TAGGGCACAATTTCCACGAGCGCGAACTCAACGATGCCAAAGGGACAGAA
TACCCCTTGCAGCTCGAATTGGCGTTCGTACTCTGGGTGTCGATTATGGT
TTGCGTCGAGTCGGTCTAGCCATCTCTGTGGGTGTGGCACCACGACCACT
TAATCGCATCGACCACAGGAACAATCCAAAGAAAGTAGCACAAGATGTGG
CACAAGTCGCCAGCCGTAGCCTCGCAGAGGCGATTGTAGTGGGGATGCCA
GTAGACCTTTACGGAGATGAAAAGGAGCAGGCTATCACGACCCGTCATTT
CGTTCAGGAACTGGTGCATTCTGCCCCATGGGCAGAGATCATGGTACTCA
ATGAGACTTTCACTTCAAAGGACGCTGCAGAACAGCTTCGTGATTCAGGG
ATTACAGGACGCAACATTAGAGATTTCGTCGATTGCGAATCGGCAGTGAT
GCTTTTGCAACGGCACTTCTCAGAGAAGGACGACTATAGATCAGAAGTGG
TGCATAGGCCCATACCTGTTACCGCTGAAGAACATCAAACTGAGGAAAGG
ATGACTTTCGCAGAGTGGAAGAAGCAGACAATGCAAAGGGCTGCGCAGAG
TGTTCACTTTAGGAAAAAGAATAAAAAGATGAAACTGAAAGGTGGAATCA
TGAACTAA
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