Gcaud1864.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1864.t1
Unique NameGcaud1864.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1057_length_14482_cov_4.222709contigNODE_1057_length_14482_cov_4.222709:282..1154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102107.XP_008241580.1
PFAMsDAP_epimerase
Max annot lvl35493|Streptophyta
KEGG rclassRC00302
KEGG koko:K01778
KEGG ReactionR02735
KEGG Pathwayko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00527
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue1.03e-101
EggNOG OGsCOG0253@1|root,2QQKJ@2759|Eukaryota,37QZX@33090|Viridiplantae,3GADP@35493|Streptophyta,4JE2D@91835|fabids
EC5.1.1.7
DescriptionDiaminopimelate epimerase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1864Gcaud1864Gracilaria caudata M_176_S67 malegeneNODE_1057_length_14482_cov_4.222709 282..1154 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1864.t1.stop1Gcaud1864.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1057_length_14482_cov_4.222709 282..284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1864.t1.CDS1Gcaud1864.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1057_length_14482_cov_4.222709 282..1154 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1864.t1.exon1Gcaud1864.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1057_length_14482_cov_4.222709 282..1154 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1864.t1.start1Gcaud1864.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1057_length_14482_cov_4.222709 1152..1154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1864.t1Gcaud1864.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1057_length_14482_cov_4.222709 282..1154 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1864.t1 ID=Gcaud1864.t1|Name=Gcaud1864.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=291bp
MTAFRKYHGLGNDFVLIDNRHSSAPVLTPTEAEAVCNRNTGVGADGVIFL
LPPTKTTSDFGMRLYNSDGTEPEMCGNGIRCLARFAADLGVHGRTTGKYV
VDTGAGEIVPQMESGSEKVKVDMGAPILEPEHVPTMLNTSAANEYQDILK
GLAGRDWTFSCVSMGNPHAITFVAKDVYDDMDSRLEAVGPSFENHPVFPQ
RTNTEFVYQHSKTDFDMLVWERGSGRTMACGTGACAVLVAAVLTGRAEKD
VPTVIHLPGGDLTIEWESSSNHVLMTGPAELVFEGKLPNM*
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spliced messenger RNA

>Gcaud1864.t1 ID=Gcaud1864.t1|Name=Gcaud1864.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=873bp|location=Sequence derived from alignment at NODE_1057_length_14482_cov_4.222709:282..1154- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCATTTCGAAAATACCATGGACTTGGAAACGACTTTGTACTGAT
TGATAACAGACATTCATCAGCACCAGTTTTAACCCCAACTGAAGCGGAAG
CAGTTTGCAATCGCAATACGGGTGTCGGTGCAGACGGGGTTATATTTCTT
CTGCCCCCGACAAAAACCACTTCGGATTTCGGCATGAGACTTTACAACTC
TGACGGCACTGAACCAGAGATGTGTGGAAACGGAATTCGTTGTTTAGCGC
GTTTTGCAGCTGACTTGGGTGTCCATGGGCGCACCACCGGGAAGTATGTA
GTGGACACTGGAGCTGGGGAAATCGTTCCGCAGATGGAGAGTGGATCGGA
GAAGGTGAAGGTTGATATGGGAGCTCCGATTCTTGAGCCCGAACACGTTC
CAACCATGCTGAATACTTCTGCGGCAAACGAATATCAAGACATTTTGAAA
GGTCTAGCGGGCCGAGATTGGACGTTTTCATGTGTGTCGATGGGGAATCC
CCACGCAATCACGTTCGTTGCCAAAGACGTATATGACGATATGGATTCTC
GTCTTGAAGCAGTTGGTCCTAGCTTTGAGAACCACCCCGTCTTTCCACAA
AGAACAAACACTGAGTTCGTATATCAGCACAGCAAAACAGATTTCGATAT
GCTTGTATGGGAACGAGGGTCCGGACGGACAATGGCCTGCGGAACAGGCG
CTTGTGCCGTACTCGTCGCCGCCGTGCTAACTGGTCGAGCAGAAAAAGAT
GTTCCGACTGTTATCCATTTACCAGGCGGTGACCTAACTATTGAATGGGA
GTCAAGTTCTAATCATGTGCTTATGACAGGACCTGCAGAACTCGTTTTCG
AGGGCAAACTGCCAAACATGTGA
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protein sequence of Gcaud1864.t1

>Gcaud1864.t1 ID=Gcaud1864.t1|Name=Gcaud1864.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=291bp
MTAFRKYHGLGNDFVLIDNRHSSAPVLTPTEAEAVCNRNTGVGADGVIFL
LPPTKTTSDFGMRLYNSDGTEPEMCGNGIRCLARFAADLGVHGRTTGKYV
VDTGAGEIVPQMESGSEKVKVDMGAPILEPEHVPTMLNTSAANEYQDILK
GLAGRDWTFSCVSMGNPHAITFVAKDVYDDMDSRLEAVGPSFENHPVFPQ
RTNTEFVYQHSKTDFDMLVWERGSGRTMACGTGACAVLVAAVLTGRAEKD
VPTVIHLPGGDLTIEWESSSNHVLMTGPAELVFEGKLPNM*
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mRNA from alignment at NODE_1057_length_14482_cov_4.222709:282..1154-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1864.t1 ID=Gcaud1864.t1|Name=Gcaud1864.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=873bp|location=Sequence derived from alignment at NODE_1057_length_14482_cov_4.222709:282..1154- (Gracilaria caudata M_176_S67 male)
ATGACTGCATTTCGAAAATACCATGGACTTGGAAACGACTTTGTACTGAT
TGATAACAGACATTCATCAGCACCAGTTTTAACCCCAACTGAAGCGGAAG
CAGTTTGCAATCGCAATACGGGTGTCGGTGCAGACGGGGTTATATTTCTT
CTGCCCCCGACAAAAACCACTTCGGATTTCGGCATGAGACTTTACAACTC
TGACGGCACTGAACCAGAGATGTGTGGAAACGGAATTCGTTGTTTAGCGC
GTTTTGCAGCTGACTTGGGTGTCCATGGGCGCACCACCGGGAAGTATGTA
GTGGACACTGGAGCTGGGGAAATCGTTCCGCAGATGGAGAGTGGATCGGA
GAAGGTGAAGGTTGATATGGGAGCTCCGATTCTTGAGCCCGAACACGTTC
CAACCATGCTGAATACTTCTGCGGCAAACGAATATCAAGACATTTTGAAA
GGTCTAGCGGGCCGAGATTGGACGTTTTCATGTGTGTCGATGGGGAATCC
CCACGCAATCACGTTCGTTGCCAAAGACGTATATGACGATATGGATTCTC
GTCTTGAAGCAGTTGGTCCTAGCTTTGAGAACCACCCCGTCTTTCCACAA
AGAACAAACACTGAGTTCGTATATCAGCACAGCAAAACAGATTTCGATAT
GCTTGTATGGGAACGAGGGTCCGGACGGACAATGGCCTGCGGAACAGGCG
CTTGTGCCGTACTCGTCGCCGCCGTGCTAACTGGTCGAGCAGAAAAAGAT
GTTCCGACTGTTATCCATTTACCAGGCGGTGACCTAACTATTGAATGGGA
GTCAAGTTCTAATCATGTGCTTATGACAGGACCTGCAGAACTCGTTTTCG
AGGGCAAACTGCCAAACATGTGA
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Coding sequence (CDS) from alignment at NODE_1057_length_14482_cov_4.222709:282..1154-

>Gcaud1864.t1 ID=Gcaud1864.t1|Name=Gcaud1864.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=873bp|location=Sequence derived from alignment at NODE_1057_length_14482_cov_4.222709:282..1154- (Gracilaria caudata M_176_S67 male)
ATGACTGCATTTCGAAAATACCATGGACTTGGAAACGACTTTGTACTGAT
TGATAACAGACATTCATCAGCACCAGTTTTAACCCCAACTGAAGCGGAAG
CAGTTTGCAATCGCAATACGGGTGTCGGTGCAGACGGGGTTATATTTCTT
CTGCCCCCGACAAAAACCACTTCGGATTTCGGCATGAGACTTTACAACTC
TGACGGCACTGAACCAGAGATGTGTGGAAACGGAATTCGTTGTTTAGCGC
GTTTTGCAGCTGACTTGGGTGTCCATGGGCGCACCACCGGGAAGTATGTA
GTGGACACTGGAGCTGGGGAAATCGTTCCGCAGATGGAGAGTGGATCGGA
GAAGGTGAAGGTTGATATGGGAGCTCCGATTCTTGAGCCCGAACACGTTC
CAACCATGCTGAATACTTCTGCGGCAAACGAATATCAAGACATTTTGAAA
GGTCTAGCGGGCCGAGATTGGACGTTTTCATGTGTGTCGATGGGGAATCC
CCACGCAATCACGTTCGTTGCCAAAGACGTATATGACGATATGGATTCTC
GTCTTGAAGCAGTTGGTCCTAGCTTTGAGAACCACCCCGTCTTTCCACAA
AGAACAAACACTGAGTTCGTATATCAGCACAGCAAAACAGATTTCGATAT
GCTTGTATGGGAACGAGGGTCCGGACGGACAATGGCCTGCGGAACAGGCG
CTTGTGCCGTACTCGTCGCCGCCGTGCTAACTGGTCGAGCAGAAAAAGAT
GTTCCGACTGTTATCCATTTACCAGGCGGTGACCTAACTATTGAATGGGA
GTCAAGTTCTAATCATGTGCTTATGACAGGACCTGCAGAACTCGTTTTCG
AGGGCAAACTGCCAAACATGTGA
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