Gcaud1858.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1858.t1
Unique Name	Gcaud1858.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	568

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1223_length_12420_cov_4.813286	contig	NODE_1223_length_12420_cov_4.813286:7025..8728 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	449447.MAE_47970
Preferred name	miaB
PFAMs	Radical_SAM,TRAM,UPF0004
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00003,RC00980,RC03221,RC03222
KEGG ko	ko:K06168
KEGG Reaction	R10645,R10646,R10647
Evalue	1.98e-171
EggNOG OGs	COG0621@1\|root,COG0621@2\|Bacteria,1G0BT@1117\|Cyanobacteria
EC	2.8.4.3
Description	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1858	Gcaud1858	Gracilaria caudata M_176_S67 male	gene	NODE_1223_length_12420_cov_4.813286 7025..8728 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1858.t1.stop1	Gcaud1858.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1223_length_12420_cov_4.813286 7025..7027 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1858.t1.CDS1	Gcaud1858.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1223_length_12420_cov_4.813286 7025..8728 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1858.t1.exon1	Gcaud1858.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1223_length_12420_cov_4.813286 7025..8728 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1858.t1.start1	Gcaud1858.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1223_length_12420_cov_4.813286 8726..8728 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1858.t1	Gcaud1858.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1223_length_12420_cov_4.813286 7025..8728 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1223_length_12420_cov_4.813286:7025..8728-
coding sequence from alignment at NODE_1223_length_12420_cov_4.813286:7025..8728-

mRNA sequence

>Gcaud1858.t1 ID=Gcaud1858.t1|Name=Gcaud1858.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=568bp
MAYFIENCVRSKRATLAHLAALLSICDGTRTSEGDTGWISVQTKMQPKNL
NPSATNEEYINDELLAKAITSRPGSLQITKLSYGWEIFIVTDVRHAVTAT
VLGATREKGFSVNPNMRRTSKRKPKIIPKSFFIQTFGCQMNESDSERMAA
ELESEGYHKVDDPNKSALYLLNTCALRDHAEQKVYSYLGSHAQRKWDAPQ
EVTLVVAGCVAQQEGEALLSRVPEIDIVMGPQYANRLADVINLYLTSKAQ
VVAVEPIHIHEDISKPKRSSKLTAWVSVIYGCLERCTYCVVPNTRGLEQS
RSMASIRKEIETLAAEGYREVVLLGQNVDAYGRDLFPRVTFSELLRYVHD
VDGIERIRFTTGHPRYISDNLIDTVFELPKVMEHFHIPPQSGDSSILKAM
KRGYTRERYIQIARKIRDKMPDASICADMIVGFPGETDEAFQNSVSLADE
VVFDANMVRAYSARPNTSAASLPDQLSEQIKMERLQIMNKNMKHHAEIRS
RRYLGRCVEVLVDGVNPKRANEVSGRERTNRVVFCEGGSELIGKVIEVRV
QEAYPFSLRGKITRIIK*

spliced messenger RNA

>Gcaud1858.t1 ID=Gcaud1858.t1|Name=Gcaud1858.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1704bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:7025..8728- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTACTTTATTGAAAATTGTGTCAGGTCAAAACGAGCCACCCTTGC
TCATCTTGCGGCTCTCCTTTCTATATGCGACGGGACTCGCACTTCAGAGG
GAGATACAGGCTGGATTTCTGTACAAACTAAGATGCAACCTAAAAATTTG
AACCCTAGTGCAACAAATGAAGAGTATATTAATGATGAGCTGCTTGCGAA
AGCCATAACATCACGTCCAGGCAGTCTTCAGATAACAAAGCTTTCTTATG
GTTGGGAGATCTTCATTGTTACTGATGTTCGACATGCAGTCACTGCAACC
GTCTTAGGAGCAACTCGTGAAAAGGGTTTCTCCGTGAATCCTAATATGCG
AAGGACGTCGAAAAGGAAGCCAAAAATCATTCCCAAGTCCTTCTTCATTC
AAACCTTTGGCTGCCAGATGAACGAAAGTGACAGTGAAAGAATGGCCGCA
GAGCTAGAAAGCGAAGGTTATCACAAAGTAGACGATCCGAACAAATCCGC
TTTGTACCTGTTGAATACCTGCGCCCTACGAGATCATGCTGAGCAAAAGG
TTTACTCCTACCTTGGTTCACACGCACAACGAAAATGGGACGCTCCACAG
GAAGTCACGCTCGTCGTTGCAGGGTGTGTTGCGCAACAAGAAGGAGAAGC
ACTTCTTTCCCGAGTACCGGAGATTGACATCGTGATGGGACCCCAGTACG
CAAATCGTCTCGCAGACGTGATCAACCTTTATCTTACGAGTAAGGCGCAA
GTTGTGGCTGTAGAACCGATTCACATCCACGAAGACATATCAAAACCGAA
GCGGTCCTCCAAGCTCACGGCCTGGGTTAGTGTCATATATGGTTGCTTAG
AGCGATGTACATACTGTGTGGTTCCGAACACAAGAGGTCTAGAACAGTCG
CGTTCAATGGCAAGCATTCGAAAAGAGATAGAAACGCTTGCTGCCGAAGG
ATACCGTGAAGTTGTTCTTCTTGGACAAAATGTTGACGCATACGGTCGAG
ACCTGTTTCCGAGGGTCACATTTTCTGAGCTATTACGATACGTCCATGAT
GTGGACGGCATTGAACGAATTCGTTTCACAACTGGTCATCCACGTTATAT
ATCTGACAATCTTATCGATACTGTGTTTGAGCTCCCGAAGGTTATGGAAC
ACTTTCACATACCTCCCCAATCGGGGGATTCTTCTATCCTCAAGGCGATG
AAAAGGGGTTACACCCGTGAACGATACATTCAGATCGCTCGAAAGATCAG
AGACAAAATGCCGGATGCATCGATTTGCGCTGATATGATTGTTGGGTTCC
CTGGAGAAACGGATGAGGCCTTTCAAAACAGTGTGAGTCTTGCTGATGAA
GTCGTTTTTGATGCAAATATGGTGAGAGCGTACTCCGCACGGCCGAACAC
AAGTGCAGCCTCCTTACCAGACCAACTAAGCGAACAAATAAAGATGGAGC
GCCTTCAGATAATGAACAAGAATATGAAGCACCATGCAGAGATACGAAGT
CGTCGCTATTTGGGACGATGTGTTGAAGTTCTAGTTGACGGTGTGAACCC
TAAGCGAGCGAACGAAGTGAGCGGGAGAGAAAGGACGAATCGAGTTGTGT
TTTGCGAGGGCGGATCTGAACTCATTGGCAAGGTGATTGAAGTTAGAGTG
CAAGAGGCCTACCCGTTTAGTTTAAGAGGCAAGATAACCAGGATTATCAA
ATGA

protein sequence of Gcaud1858.t1

>Gcaud1858.t1 ID=Gcaud1858.t1|Name=Gcaud1858.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=568bp
MAYFIENCVRSKRATLAHLAALLSICDGTRTSEGDTGWISVQTKMQPKNL
NPSATNEEYINDELLAKAITSRPGSLQITKLSYGWEIFIVTDVRHAVTAT
VLGATREKGFSVNPNMRRTSKRKPKIIPKSFFIQTFGCQMNESDSERMAA
ELESEGYHKVDDPNKSALYLLNTCALRDHAEQKVYSYLGSHAQRKWDAPQ
EVTLVVAGCVAQQEGEALLSRVPEIDIVMGPQYANRLADVINLYLTSKAQ
VVAVEPIHIHEDISKPKRSSKLTAWVSVIYGCLERCTYCVVPNTRGLEQS
RSMASIRKEIETLAAEGYREVVLLGQNVDAYGRDLFPRVTFSELLRYVHD
VDGIERIRFTTGHPRYISDNLIDTVFELPKVMEHFHIPPQSGDSSILKAM
KRGYTRERYIQIARKIRDKMPDASICADMIVGFPGETDEAFQNSVSLADE
VVFDANMVRAYSARPNTSAASLPDQLSEQIKMERLQIMNKNMKHHAEIRS
RRYLGRCVEVLVDGVNPKRANEVSGRERTNRVVFCEGGSELIGKVIEVRV
QEAYPFSLRGKITRIIK*

mRNA from alignment at NODE_1223_length_12420_cov_4.813286:7025..8728-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1858.t1 ID=Gcaud1858.t1|Name=Gcaud1858.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1704bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:7025..8728- (Gracilaria caudata M_176_S67 male)
ATGGCGTACTTTATTGAAAATTGTGTCAGGTCAAAACGAGCCACCCTTGC
TCATCTTGCGGCTCTCCTTTCTATATGCGACGGGACTCGCACTTCAGAGG
GAGATACAGGCTGGATTTCTGTACAAACTAAGATGCAACCTAAAAATTTG
AACCCTAGTGCAACAAATGAAGAGTATATTAATGATGAGCTGCTTGCGAA
AGCCATAACATCACGTCCAGGCAGTCTTCAGATAACAAAGCTTTCTTATG
GTTGGGAGATCTTCATTGTTACTGATGTTCGACATGCAGTCACTGCAACC
GTCTTAGGAGCAACTCGTGAAAAGGGTTTCTCCGTGAATCCTAATATGCG
AAGGACGTCGAAAAGGAAGCCAAAAATCATTCCCAAGTCCTTCTTCATTC
AAACCTTTGGCTGCCAGATGAACGAAAGTGACAGTGAAAGAATGGCCGCA
GAGCTAGAAAGCGAAGGTTATCACAAAGTAGACGATCCGAACAAATCCGC
TTTGTACCTGTTGAATACCTGCGCCCTACGAGATCATGCTGAGCAAAAGG
TTTACTCCTACCTTGGTTCACACGCACAACGAAAATGGGACGCTCCACAG
GAAGTCACGCTCGTCGTTGCAGGGTGTGTTGCGCAACAAGAAGGAGAAGC
ACTTCTTTCCCGAGTACCGGAGATTGACATCGTGATGGGACCCCAGTACG
CAAATCGTCTCGCAGACGTGATCAACCTTTATCTTACGAGTAAGGCGCAA
GTTGTGGCTGTAGAACCGATTCACATCCACGAAGACATATCAAAACCGAA
GCGGTCCTCCAAGCTCACGGCCTGGGTTAGTGTCATATATGGTTGCTTAG
AGCGATGTACATACTGTGTGGTTCCGAACACAAGAGGTCTAGAACAGTCG
CGTTCAATGGCAAGCATTCGAAAAGAGATAGAAACGCTTGCTGCCGAAGG
ATACCGTGAAGTTGTTCTTCTTGGACAAAATGTTGACGCATACGGTCGAG
ACCTGTTTCCGAGGGTCACATTTTCTGAGCTATTACGATACGTCCATGAT
GTGGACGGCATTGAACGAATTCGTTTCACAACTGGTCATCCACGTTATAT
ATCTGACAATCTTATCGATACTGTGTTTGAGCTCCCGAAGGTTATGGAAC
ACTTTCACATACCTCCCCAATCGGGGGATTCTTCTATCCTCAAGGCGATG
AAAAGGGGTTACACCCGTGAACGATACATTCAGATCGCTCGAAAGATCAG
AGACAAAATGCCGGATGCATCGATTTGCGCTGATATGATTGTTGGGTTCC
CTGGAGAAACGGATGAGGCCTTTCAAAACAGTGTGAGTCTTGCTGATGAA
GTCGTTTTTGATGCAAATATGGTGAGAGCGTACTCCGCACGGCCGAACAC
AAGTGCAGCCTCCTTACCAGACCAACTAAGCGAACAAATAAAGATGGAGC
GCCTTCAGATAATGAACAAGAATATGAAGCACCATGCAGAGATACGAAGT
CGTCGCTATTTGGGACGATGTGTTGAAGTTCTAGTTGACGGTGTGAACCC
TAAGCGAGCGAACGAAGTGAGCGGGAGAGAAAGGACGAATCGAGTTGTGT
TTTGCGAGGGCGGATCTGAACTCATTGGCAAGGTGATTGAAGTTAGAGTG
CAAGAGGCCTACCCGTTTAGTTTAAGAGGCAAGATAACCAGGATTATCAA
ATGA

Coding sequence (CDS) from alignment at NODE_1223_length_12420_cov_4.813286:7025..8728-

>Gcaud1858.t1 ID=Gcaud1858.t1|Name=Gcaud1858.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1704bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:7025..8728- (Gracilaria caudata M_176_S67 male)
ATGGCGTACTTTATTGAAAATTGTGTCAGGTCAAAACGAGCCACCCTTGC
TCATCTTGCGGCTCTCCTTTCTATATGCGACGGGACTCGCACTTCAGAGG
GAGATACAGGCTGGATTTCTGTACAAACTAAGATGCAACCTAAAAATTTG
AACCCTAGTGCAACAAATGAAGAGTATATTAATGATGAGCTGCTTGCGAA
AGCCATAACATCACGTCCAGGCAGTCTTCAGATAACAAAGCTTTCTTATG
GTTGGGAGATCTTCATTGTTACTGATGTTCGACATGCAGTCACTGCAACC
GTCTTAGGAGCAACTCGTGAAAAGGGTTTCTCCGTGAATCCTAATATGCG
AAGGACGTCGAAAAGGAAGCCAAAAATCATTCCCAAGTCCTTCTTCATTC
AAACCTTTGGCTGCCAGATGAACGAAAGTGACAGTGAAAGAATGGCCGCA
GAGCTAGAAAGCGAAGGTTATCACAAAGTAGACGATCCGAACAAATCCGC
TTTGTACCTGTTGAATACCTGCGCCCTACGAGATCATGCTGAGCAAAAGG
TTTACTCCTACCTTGGTTCACACGCACAACGAAAATGGGACGCTCCACAG
GAAGTCACGCTCGTCGTTGCAGGGTGTGTTGCGCAACAAGAAGGAGAAGC
ACTTCTTTCCCGAGTACCGGAGATTGACATCGTGATGGGACCCCAGTACG
CAAATCGTCTCGCAGACGTGATCAACCTTTATCTTACGAGTAAGGCGCAA
GTTGTGGCTGTAGAACCGATTCACATCCACGAAGACATATCAAAACCGAA
GCGGTCCTCCAAGCTCACGGCCTGGGTTAGTGTCATATATGGTTGCTTAG
AGCGATGTACATACTGTGTGGTTCCGAACACAAGAGGTCTAGAACAGTCG
CGTTCAATGGCAAGCATTCGAAAAGAGATAGAAACGCTTGCTGCCGAAGG
ATACCGTGAAGTTGTTCTTCTTGGACAAAATGTTGACGCATACGGTCGAG
ACCTGTTTCCGAGGGTCACATTTTCTGAGCTATTACGATACGTCCATGAT
GTGGACGGCATTGAACGAATTCGTTTCACAACTGGTCATCCACGTTATAT
ATCTGACAATCTTATCGATACTGTGTTTGAGCTCCCGAAGGTTATGGAAC
ACTTTCACATACCTCCCCAATCGGGGGATTCTTCTATCCTCAAGGCGATG
AAAAGGGGTTACACCCGTGAACGATACATTCAGATCGCTCGAAAGATCAG
AGACAAAATGCCGGATGCATCGATTTGCGCTGATATGATTGTTGGGTTCC
CTGGAGAAACGGATGAGGCCTTTCAAAACAGTGTGAGTCTTGCTGATGAA
GTCGTTTTTGATGCAAATATGGTGAGAGCGTACTCCGCACGGCCGAACAC
AAGTGCAGCCTCCTTACCAGACCAACTAAGCGAACAAATAAAGATGGAGC
GCCTTCAGATAATGAACAAGAATATGAAGCACCATGCAGAGATACGAAGT
CGTCGCTATTTGGGACGATGTGTTGAAGTTCTAGTTGACGGTGTGAACCC
TAAGCGAGCGAACGAAGTGAGCGGGAGAGAAAGGACGAATCGAGTTGTGT
TTTGCGAGGGCGGATCTGAACTCATTGGCAAGGTGATTGAAGTTAGAGTG
CAAGAGGCCTACCCGTTTAGTTTAAGAGGCAAGATAACCAGGATTATCAA
ATGA