Gcaud1856.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1856.t1
Unique Name	Gcaud1856.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	196

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1223_length_12420_cov_4.813286	contig	NODE_1223_length_12420_cov_4.813286:3168..3755 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	57918.XP_004299964.1
PFAMs	CSN8_PSD8_EIF3K
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12181
GOs	GO:0000338,GO:0001101,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009314,GO:0009416,GO:0009628,GO:0009719,GO:0009725,GO:0009753,GO:0009987,GO:0010033,GO:0010387,GO:0016043,GO:0016787,GO:0019538,GO:0022607,GO:0034622,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0065003,GO:0070011,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901700
Evalue	2.17e-19
EggNOG OGs	KOG4414@1\|root,KOG4414@2759\|Eukaryota,37RGB@33090\|Viridiplantae,3G7KG@35493\|Streptophyta,4JN24@91835\|fabids
Description	Cop9 signalosome complex subunit
COG category	OT
BRITE	ko00000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1856	Gcaud1856	Gracilaria caudata M_176_S67 male	gene	NODE_1223_length_12420_cov_4.813286 3168..3755 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1856.t1.stop1	Gcaud1856.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1223_length_12420_cov_4.813286 3168..3170 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1856.t1.CDS1	Gcaud1856.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1223_length_12420_cov_4.813286 3168..3755 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1856.t1.exon1	Gcaud1856.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1223_length_12420_cov_4.813286 3168..3755 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1856.t1.start1	Gcaud1856.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1223_length_12420_cov_4.813286 3753..3755 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1856.t1	Gcaud1856.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1223_length_12420_cov_4.813286 3168..3755 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1223_length_12420_cov_4.813286:3168..3755-
coding sequence from alignment at NODE_1223_length_12420_cov_4.813286:3168..3755-

mRNA sequence

>Gcaud1856.t1 ID=Gcaud1856.t1|Name=Gcaud1856.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=196bp
MSIITAAAEALDVARVVELCEDAELTAAEKNDVHPFPAFHLLGLLLQEDL
NEARFLWKRLPPLCQENTETKAAWKLAQALWKRDNSEFFQAAERRHWSQE
AGHLVQELVRRKKEAAKQLVERSYSCISLQRASALLGLDQPALLQLCQSE
EWVVEDNFILIAKVKTNRKIPNHAAVQQSELQVLTEQLIKLQTTS*

spliced messenger RNA

>Gcaud1856.t1 ID=Gcaud1856.t1|Name=Gcaud1856.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=588bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:3168..3755- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGATAATCACTGCGGCTGCGGAAGCTTTGGATGTTGCGCGGGTAGT
CGAGCTCTGCGAGGACGCAGAGTTGACCGCCGCCGAGAAAAACGACGTAC
ATCCATTCCCCGCGTTCCATCTTCTTGGTCTTTTACTTCAAGAAGACTTG
AACGAAGCTCGGTTTTTGTGGAAACGCCTACCCCCTTTATGTCAAGAAAA
CACGGAAACCAAAGCTGCCTGGAAGCTAGCTCAGGCGCTGTGGAAGCGCG
ACAACAGCGAGTTTTTCCAGGCTGCTGAACGACGGCACTGGAGCCAAGAA
GCAGGTCATCTCGTTCAAGAACTGGTACGACGGAAAAAGGAAGCGGCAAA
ACAGCTCGTAGAGAGAAGTTACTCGTGCATCTCACTGCAGCGAGCAAGTG
CTTTGCTCGGTCTTGATCAGCCCGCTTTGCTGCAATTATGCCAATCAGAA
GAATGGGTCGTGGAAGACAACTTCATTCTGATTGCTAAGGTCAAAACAAA
CCGCAAGATTCCTAACCACGCCGCCGTACAGCAAAGCGAGCTACAAGTAC
TTACTGAACAATTAATCAAACTTCAAACAACAAGCTAA

protein sequence of Gcaud1856.t1

>Gcaud1856.t1 ID=Gcaud1856.t1|Name=Gcaud1856.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=196bp
MSIITAAAEALDVARVVELCEDAELTAAEKNDVHPFPAFHLLGLLLQEDL
NEARFLWKRLPPLCQENTETKAAWKLAQALWKRDNSEFFQAAERRHWSQE
AGHLVQELVRRKKEAAKQLVERSYSCISLQRASALLGLDQPALLQLCQSE
EWVVEDNFILIAKVKTNRKIPNHAAVQQSELQVLTEQLIKLQTTS*

mRNA from alignment at NODE_1223_length_12420_cov_4.813286:3168..3755-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1856.t1 ID=Gcaud1856.t1|Name=Gcaud1856.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=588bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:3168..3755- (Gracilaria caudata M_176_S67 male)
ATGTCGATAATCACTGCGGCTGCGGAAGCTTTGGATGTTGCGCGGGTAGT
CGAGCTCTGCGAGGACGCAGAGTTGACCGCCGCCGAGAAAAACGACGTAC
ATCCATTCCCCGCGTTCCATCTTCTTGGTCTTTTACTTCAAGAAGACTTG
AACGAAGCTCGGTTTTTGTGGAAACGCCTACCCCCTTTATGTCAAGAAAA
CACGGAAACCAAAGCTGCCTGGAAGCTAGCTCAGGCGCTGTGGAAGCGCG
ACAACAGCGAGTTTTTCCAGGCTGCTGAACGACGGCACTGGAGCCAAGAA
GCAGGTCATCTCGTTCAAGAACTGGTACGACGGAAAAAGGAAGCGGCAAA
ACAGCTCGTAGAGAGAAGTTACTCGTGCATCTCACTGCAGCGAGCAAGTG
CTTTGCTCGGTCTTGATCAGCCCGCTTTGCTGCAATTATGCCAATCAGAA
GAATGGGTCGTGGAAGACAACTTCATTCTGATTGCTAAGGTCAAAACAAA
CCGCAAGATTCCTAACCACGCCGCCGTACAGCAAAGCGAGCTACAAGTAC
TTACTGAACAATTAATCAAACTTCAAACAACAAGCTAA

Coding sequence (CDS) from alignment at NODE_1223_length_12420_cov_4.813286:3168..3755-

>Gcaud1856.t1 ID=Gcaud1856.t1|Name=Gcaud1856.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=588bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:3168..3755- (Gracilaria caudata M_176_S67 male)
ATGTCGATAATCACTGCGGCTGCGGAAGCTTTGGATGTTGCGCGGGTAGT
CGAGCTCTGCGAGGACGCAGAGTTGACCGCCGCCGAGAAAAACGACGTAC
ATCCATTCCCCGCGTTCCATCTTCTTGGTCTTTTACTTCAAGAAGACTTG
AACGAAGCTCGGTTTTTGTGGAAACGCCTACCCCCTTTATGTCAAGAAAA
CACGGAAACCAAAGCTGCCTGGAAGCTAGCTCAGGCGCTGTGGAAGCGCG
ACAACAGCGAGTTTTTCCAGGCTGCTGAACGACGGCACTGGAGCCAAGAA
GCAGGTCATCTCGTTCAAGAACTGGTACGACGGAAAAAGGAAGCGGCAAA
ACAGCTCGTAGAGAGAAGTTACTCGTGCATCTCACTGCAGCGAGCAAGTG
CTTTGCTCGGTCTTGATCAGCCCGCTTTGCTGCAATTATGCCAATCAGAA
GAATGGGTCGTGGAAGACAACTTCATTCTGATTGCTAAGGTCAAAACAAA
CCGCAAGATTCCTAACCACGCCGCCGTACAGCAAAGCGAGCTACAAGTAC
TTACTGAACAATTAATCAAACTTCAAACAACAAGCTAA