Gcaud1854.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1854.t1
Unique Name	Gcaud1854.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	646

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1223_length_12420_cov_4.813286	contig	NODE_1223_length_12420_cov_4.813286:2..1939 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	82508.K1V6N9
Preferred name	AFG2
PFAMs	AAA
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14575
KEGG Pathway	ko03008,map03008
GOs	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0008144,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022613,GO:0030554,GO:0030684,GO:0030687,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0042221,GO:0042254,GO:0042273,GO:0042493,GO:0043167,GO:0043168,GO:0044085,GO:0044464,GO:0050896,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904
Evalue	6.24e-89
EggNOG OGs	COG0464@1\|root,COG1612@1\|root,KOG0730@2759\|Eukaryota,KOG2725@2759\|Eukaryota,38CYE@33154\|Opisthokonta,3NW8H@4751\|Fungi,3UZPC@5204\|Basidiomycota,3VEUI@5234\|Tremellales
Description	AAA domain (dynein-related subfamily)
COG category	O
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1854	Gcaud1854	Gracilaria caudata M_176_S67 male	gene	NODE_1223_length_12420_cov_4.813286 2..1939 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1854.t1.CDS1	Gcaud1854.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1223_length_12420_cov_4.813286 2..1939 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1854.t1.exon1	Gcaud1854.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1223_length_12420_cov_4.813286 2..1939 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1854.t1.start1	Gcaud1854.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1223_length_12420_cov_4.813286 1937..1939 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1854.t1	Gcaud1854.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1223_length_12420_cov_4.813286 2..1939 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1223_length_12420_cov_4.813286:2..1939-
coding sequence from alignment at NODE_1223_length_12420_cov_4.813286:2..1939-

mRNA sequence

>Gcaud1854.t1 ID=Gcaud1854.t1|Name=Gcaud1854.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=646bp
MTEVLGQRDAVQSSALQPVCLDELINRSRNAKGIPPESLTKLGVACIHPN
EMRSNGYKVMDIGVLQDPNSYKFVAASLWPLEVVDEGFVALDERSKLALG
LDLDKGLIHMPSMQTSRKPRNRKGKRGTPSRKAAREGGRHGRTGLEKEDM
LETKSLSEAVLKVNLIRVVDKGSVVEARTIHLFCDTELDFLLSDECSAML
HACLLGKTVMSEMVVSMNLLGDNILLNVLGINDDFRKSENCKLGLQERQI
YICTKETLVEITLDAQSQYAKGIEHSVDLGSLAGLDRQVQEARSILESGI
RTKTTDDIWGSTSSMLAKKPHGLLIHGPSGTGKTMMVYALANSYDLNLEV
ISGPEVVGKSTSDALRTIENCFKRARRKSPSLVLLDEVDALAPRRDLPTL
DDLQRKLTAALLTIMDNQDGSELHNVVVVGTTSRPDLVDAAMRRPGRFDR
EVETTVPNAAARVQILKKLVMEATTDVRVQVSDEELEKIAVLCYGYVGAD
IVSLWREAVSLAYDRESKPSILEVDFKEALRKVRPSALREIAVEIPTTTW
SDVGGKEEAKQRLQEAVEWPLSENGSLAFSSFGVTPPRGILLYGPPGCSK
TLLARAVATESKANFISVKGAELLSKWVGASEKAVRNIFRRARQAA

spliced messenger RNA

>Gcaud1854.t1 ID=Gcaud1854.t1|Name=Gcaud1854.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1938bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:2..1939- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGAAGTTTTAGGTCAAAGGGATGCGGTCCAGAGCTCGGCCTTGCA
GCCAGTTTGCCTCGATGAACTGATCAACCGTTCTCGAAATGCGAAGGGTA
TCCCACCAGAGTCTTTGACAAAACTTGGGGTCGCCTGTATACATCCGAAT
GAAATGCGTAGCAACGGATACAAAGTAATGGATATCGGTGTTCTTCAGGA
CCCTAACAGCTACAAGTTTGTAGCAGCCTCGCTTTGGCCCCTTGAAGTTG
TTGACGAAGGTTTCGTAGCACTTGATGAGCGTTCAAAACTCGCCCTCGGA
CTTGATTTAGACAAGGGATTGATTCATATGCCAAGCATGCAGACCTCAAG
AAAGCCTAGGAACAGGAAAGGAAAGAGAGGAACTCCCTCACGTAAGGCTG
CTCGGGAAGGAGGTCGTCATGGCCGTACAGGGCTTGAGAAAGAAGACATG
CTTGAAACGAAGTCTCTTTCTGAGGCCGTGCTCAAAGTCAATCTGATTAG
AGTAGTGGATAAGGGTTCGGTAGTGGAGGCCCGAACCATTCACCTCTTTT
GCGACACTGAACTCGATTTCTTGCTTTCAGATGAGTGTAGCGCCATGCTT
CACGCTTGTCTTCTAGGGAAGACTGTTATGTCGGAAATGGTAGTTTCGAT
GAATCTATTAGGCGACAACATCCTGCTTAATGTATTAGGGATCAACGATG
ACTTCAGAAAGTCCGAGAATTGCAAGCTGGGTCTACAGGAAAGACAGATC
TACATATGTACGAAGGAGACTCTGGTTGAGATTACTTTAGATGCACAAAG
TCAGTATGCCAAGGGTATAGAGCATTCCGTCGACCTTGGAAGCTTGGCTG
GATTAGACCGTCAAGTACAAGAAGCCCGGTCAATATTAGAAAGTGGTATT
CGAACTAAAACGACCGACGACATCTGGGGATCAACGTCTTCAATGCTTGC
GAAGAAACCACATGGACTTCTTATTCATGGTCCATCTGGCACTGGCAAGA
CTATGATGGTGTATGCGTTGGCGAACAGTTACGATTTAAACCTTGAAGTG
ATCTCAGGTCCTGAAGTTGTGGGTAAGTCCACGTCCGACGCTCTGCGGAC
AATAGAGAATTGTTTCAAACGAGCCCGTCGAAAAAGCCCGAGCCTGGTCC
TTCTTGATGAAGTGGACGCACTGGCCCCAAGGAGAGATTTGCCTACTCTT
GATGACCTTCAGAGAAAGCTGACTGCTGCCTTACTCACAATCATGGACAA
CCAAGATGGTTCAGAGCTCCATAACGTAGTAGTTGTGGGGACTACAAGTA
GACCTGACCTCGTTGACGCTGCGATGCGAAGACCAGGGCGGTTTGACCGT
GAAGTTGAGACTACGGTTCCAAACGCAGCAGCTCGAGTACAGATCTTGAA
GAAGTTGGTTATGGAAGCAACTACAGATGTCAGGGTACAAGTGAGTGACG
AGGAACTTGAAAAGATTGCGGTTCTTTGTTATGGATATGTAGGTGCGGAT
ATCGTGTCCTTGTGGCGCGAAGCGGTGAGCTTGGCTTATGATCGGGAATC
AAAACCATCCATCTTGGAGGTGGACTTCAAGGAAGCGCTTAGAAAAGTTC
GTCCTAGTGCCCTTCGAGAAATTGCAGTGGAGATTCCAACCACGACATGG
AGTGACGTCGGAGGGAAGGAAGAAGCGAAACAGAGATTACAGGAAGCCGT
GGAATGGCCGCTGAGTGAGAATGGATCGCTGGCATTTTCATCTTTTGGAG
TTACTCCTCCGCGTGGGATTCTTTTGTATGGTCCACCGGGTTGCAGCAAG
ACGCTTCTTGCAAGAGCCGTCGCAACCGAGTCAAAGGCGAACTTCATATC
CGTGAAAGGGGCAGAACTGTTATCCAAATGGGTCGGAGCAAGTGAGAAGG
CTGTACGGAACATCTTCAGAAGAGCGCGACAAGCAGCG

protein sequence of Gcaud1854.t1

>Gcaud1854.t1 ID=Gcaud1854.t1|Name=Gcaud1854.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=646bp
MTEVLGQRDAVQSSALQPVCLDELINRSRNAKGIPPESLTKLGVACIHPN
EMRSNGYKVMDIGVLQDPNSYKFVAASLWPLEVVDEGFVALDERSKLALG
LDLDKGLIHMPSMQTSRKPRNRKGKRGTPSRKAAREGGRHGRTGLEKEDM
LETKSLSEAVLKVNLIRVVDKGSVVEARTIHLFCDTELDFLLSDECSAML
HACLLGKTVMSEMVVSMNLLGDNILLNVLGINDDFRKSENCKLGLQERQI
YICTKETLVEITLDAQSQYAKGIEHSVDLGSLAGLDRQVQEARSILESGI
RTKTTDDIWGSTSSMLAKKPHGLLIHGPSGTGKTMMVYALANSYDLNLEV
ISGPEVVGKSTSDALRTIENCFKRARRKSPSLVLLDEVDALAPRRDLPTL
DDLQRKLTAALLTIMDNQDGSELHNVVVVGTTSRPDLVDAAMRRPGRFDR
EVETTVPNAAARVQILKKLVMEATTDVRVQVSDEELEKIAVLCYGYVGAD
IVSLWREAVSLAYDRESKPSILEVDFKEALRKVRPSALREIAVEIPTTTW
SDVGGKEEAKQRLQEAVEWPLSENGSLAFSSFGVTPPRGILLYGPPGCSK
TLLARAVATESKANFISVKGAELLSKWVGASEKAVRNIFRRARQAA

mRNA from alignment at NODE_1223_length_12420_cov_4.813286:2..1939-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1854.t1 ID=Gcaud1854.t1|Name=Gcaud1854.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1938bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:2..1939- (Gracilaria caudata M_176_S67 male)
ATGACGGAAGTTTTAGGTCAAAGGGATGCGGTCCAGAGCTCGGCCTTGCA
GCCAGTTTGCCTCGATGAACTGATCAACCGTTCTCGAAATGCGAAGGGTA
TCCCACCAGAGTCTTTGACAAAACTTGGGGTCGCCTGTATACATCCGAAT
GAAATGCGTAGCAACGGATACAAAGTAATGGATATCGGTGTTCTTCAGGA
CCCTAACAGCTACAAGTTTGTAGCAGCCTCGCTTTGGCCCCTTGAAGTTG
TTGACGAAGGTTTCGTAGCACTTGATGAGCGTTCAAAACTCGCCCTCGGA
CTTGATTTAGACAAGGGATTGATTCATATGCCAAGCATGCAGACCTCAAG
AAAGCCTAGGAACAGGAAAGGAAAGAGAGGAACTCCCTCACGTAAGGCTG
CTCGGGAAGGAGGTCGTCATGGCCGTACAGGGCTTGAGAAAGAAGACATG
CTTGAAACGAAGTCTCTTTCTGAGGCCGTGCTCAAAGTCAATCTGATTAG
AGTAGTGGATAAGGGTTCGGTAGTGGAGGCCCGAACCATTCACCTCTTTT
GCGACACTGAACTCGATTTCTTGCTTTCAGATGAGTGTAGCGCCATGCTT
CACGCTTGTCTTCTAGGGAAGACTGTTATGTCGGAAATGGTAGTTTCGAT
GAATCTATTAGGCGACAACATCCTGCTTAATGTATTAGGGATCAACGATG
ACTTCAGAAAGTCCGAGAATTGCAAGCTGGGTCTACAGGAAAGACAGATC
TACATATGTACGAAGGAGACTCTGGTTGAGATTACTTTAGATGCACAAAG
TCAGTATGCCAAGGGTATAGAGCATTCCGTCGACCTTGGAAGCTTGGCTG
GATTAGACCGTCAAGTACAAGAAGCCCGGTCAATATTAGAAAGTGGTATT
CGAACTAAAACGACCGACGACATCTGGGGATCAACGTCTTCAATGCTTGC
GAAGAAACCACATGGACTTCTTATTCATGGTCCATCTGGCACTGGCAAGA
CTATGATGGTGTATGCGTTGGCGAACAGTTACGATTTAAACCTTGAAGTG
ATCTCAGGTCCTGAAGTTGTGGGTAAGTCCACGTCCGACGCTCTGCGGAC
AATAGAGAATTGTTTCAAACGAGCCCGTCGAAAAAGCCCGAGCCTGGTCC
TTCTTGATGAAGTGGACGCACTGGCCCCAAGGAGAGATTTGCCTACTCTT
GATGACCTTCAGAGAAAGCTGACTGCTGCCTTACTCACAATCATGGACAA
CCAAGATGGTTCAGAGCTCCATAACGTAGTAGTTGTGGGGACTACAAGTA
GACCTGACCTCGTTGACGCTGCGATGCGAAGACCAGGGCGGTTTGACCGT
GAAGTTGAGACTACGGTTCCAAACGCAGCAGCTCGAGTACAGATCTTGAA
GAAGTTGGTTATGGAAGCAACTACAGATGTCAGGGTACAAGTGAGTGACG
AGGAACTTGAAAAGATTGCGGTTCTTTGTTATGGATATGTAGGTGCGGAT
ATCGTGTCCTTGTGGCGCGAAGCGGTGAGCTTGGCTTATGATCGGGAATC
AAAACCATCCATCTTGGAGGTGGACTTCAAGGAAGCGCTTAGAAAAGTTC
GTCCTAGTGCCCTTCGAGAAATTGCAGTGGAGATTCCAACCACGACATGG
AGTGACGTCGGAGGGAAGGAAGAAGCGAAACAGAGATTACAGGAAGCCGT
GGAATGGCCGCTGAGTGAGAATGGATCGCTGGCATTTTCATCTTTTGGAG
TTACTCCTCCGCGTGGGATTCTTTTGTATGGTCCACCGGGTTGCAGCAAG
ACGCTTCTTGCAAGAGCCGTCGCAACCGAGTCAAAGGCGAACTTCATATC
CGTGAAAGGGGCAGAACTGTTATCCAAATGGGTCGGAGCAAGTGAGAAGG
CTGTACGGAACATCTTCAGAAGAGCGCGACAAGCAGCG

Coding sequence (CDS) from alignment at NODE_1223_length_12420_cov_4.813286:2..1939-

>Gcaud1854.t1 ID=Gcaud1854.t1|Name=Gcaud1854.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1938bp|location=Sequence derived from alignment at NODE_1223_length_12420_cov_4.813286:2..1939- (Gracilaria caudata M_176_S67 male)
ATGACGGAAGTTTTAGGTCAAAGGGATGCGGTCCAGAGCTCGGCCTTGCA
GCCAGTTTGCCTCGATGAACTGATCAACCGTTCTCGAAATGCGAAGGGTA
TCCCACCAGAGTCTTTGACAAAACTTGGGGTCGCCTGTATACATCCGAAT
GAAATGCGTAGCAACGGATACAAAGTAATGGATATCGGTGTTCTTCAGGA
CCCTAACAGCTACAAGTTTGTAGCAGCCTCGCTTTGGCCCCTTGAAGTTG
TTGACGAAGGTTTCGTAGCACTTGATGAGCGTTCAAAACTCGCCCTCGGA
CTTGATTTAGACAAGGGATTGATTCATATGCCAAGCATGCAGACCTCAAG
AAAGCCTAGGAACAGGAAAGGAAAGAGAGGAACTCCCTCACGTAAGGCTG
CTCGGGAAGGAGGTCGTCATGGCCGTACAGGGCTTGAGAAAGAAGACATG
CTTGAAACGAAGTCTCTTTCTGAGGCCGTGCTCAAAGTCAATCTGATTAG
AGTAGTGGATAAGGGTTCGGTAGTGGAGGCCCGAACCATTCACCTCTTTT
GCGACACTGAACTCGATTTCTTGCTTTCAGATGAGTGTAGCGCCATGCTT
CACGCTTGTCTTCTAGGGAAGACTGTTATGTCGGAAATGGTAGTTTCGAT
GAATCTATTAGGCGACAACATCCTGCTTAATGTATTAGGGATCAACGATG
ACTTCAGAAAGTCCGAGAATTGCAAGCTGGGTCTACAGGAAAGACAGATC
TACATATGTACGAAGGAGACTCTGGTTGAGATTACTTTAGATGCACAAAG
TCAGTATGCCAAGGGTATAGAGCATTCCGTCGACCTTGGAAGCTTGGCTG
GATTAGACCGTCAAGTACAAGAAGCCCGGTCAATATTAGAAAGTGGTATT
CGAACTAAAACGACCGACGACATCTGGGGATCAACGTCTTCAATGCTTGC
GAAGAAACCACATGGACTTCTTATTCATGGTCCATCTGGCACTGGCAAGA
CTATGATGGTGTATGCGTTGGCGAACAGTTACGATTTAAACCTTGAAGTG
ATCTCAGGTCCTGAAGTTGTGGGTAAGTCCACGTCCGACGCTCTGCGGAC
AATAGAGAATTGTTTCAAACGAGCCCGTCGAAAAAGCCCGAGCCTGGTCC
TTCTTGATGAAGTGGACGCACTGGCCCCAAGGAGAGATTTGCCTACTCTT
GATGACCTTCAGAGAAAGCTGACTGCTGCCTTACTCACAATCATGGACAA
CCAAGATGGTTCAGAGCTCCATAACGTAGTAGTTGTGGGGACTACAAGTA
GACCTGACCTCGTTGACGCTGCGATGCGAAGACCAGGGCGGTTTGACCGT
GAAGTTGAGACTACGGTTCCAAACGCAGCAGCTCGAGTACAGATCTTGAA
GAAGTTGGTTATGGAAGCAACTACAGATGTCAGGGTACAAGTGAGTGACG
AGGAACTTGAAAAGATTGCGGTTCTTTGTTATGGATATGTAGGTGCGGAT
ATCGTGTCCTTGTGGCGCGAAGCGGTGAGCTTGGCTTATGATCGGGAATC
AAAACCATCCATCTTGGAGGTGGACTTCAAGGAAGCGCTTAGAAAAGTTC
GTCCTAGTGCCCTTCGAGAAATTGCAGTGGAGATTCCAACCACGACATGG
AGTGACGTCGGAGGGAAGGAAGAAGCGAAACAGAGATTACAGGAAGCCGT
GGAATGGCCGCTGAGTGAGAATGGATCGCTGGCATTTTCATCTTTTGGAG
TTACTCCTCCGCGTGGGATTCTTTTGTATGGTCCACCGGGTTGCAGCAAG
ACGCTTCTTGCAAGAGCCGTCGCAACCGAGTCAAAGGCGAACTTCATATC
CGTGAAAGGGGCAGAACTGTTATCCAAATGGGTCGGAGCAAGTGAGAAGG
CTGTACGGAACATCTTCAGAAGAGCGCGACAAGCAGCG