Gcaud1844.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1844.t1
Unique Name	Gcaud1844.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	447

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_207_length_37223_cov_4.468356	contig	NODE_207_length_37223_cov_4.468356:17895..19235 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1238182.C882_3625
PFAMs	MmgE_PrpD
Max annot lvl	204441\|Rhodospirillales
Evalue	3.74e-105
EggNOG OGs	COG2079@1\|root,COG2079@2\|Bacteria,1R5UM@1224\|Proteobacteria,2U1F8@28211\|Alphaproteobacteria,2JTNS@204441\|Rhodospirillales
Description	MmgE/PrpD family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1844	Gcaud1844	Gracilaria caudata M_176_S67 male	gene	NODE_207_length_37223_cov_4.468356 17895..19235 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1844.t1.start1	Gcaud1844.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_207_length_37223_cov_4.468356 17895..17897 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1844.t1.CDS1	Gcaud1844.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_207_length_37223_cov_4.468356 17895..19235 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1844.t1.exon1	Gcaud1844.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_207_length_37223_cov_4.468356 17895..19235 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1844.t1.stop1	Gcaud1844.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_207_length_37223_cov_4.468356 19233..19235 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1844.t1	Gcaud1844.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_207_length_37223_cov_4.468356 17895..19235 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_207_length_37223_cov_4.468356:17895..19235+
coding sequence from alignment at NODE_207_length_37223_cov_4.468356:17895..19235+

mRNA sequence

>Gcaud1844.t1 ID=Gcaud1844.t1|Name=Gcaud1844.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=447bp
MDPISFIHDLSYDNISPHTIHATKRLLVDNLGVCITGRQTELAQLAFDFA
ASVFAGDATALWFDGRRVSLPGALLAHASACDSVDAHDGFARCDGHPGVA
IIPAVFSTLHTKNGVVIDGKELLTSTVMAYEICIRAGAVLHSTSSAYHSS
GAWNALGVAAIYARRFNLTREQTRHALGIAEYNAPRSLVMRCVDYPTMIK
DGSGWGAMTGMCSAMMAENGFTGAPATMVETHFDKRNSKSQVVINEWEDL
GRVWALEQPRLKEFPVCFWAQAPIQATTALQERHNFKNQDISKIRVLTYE
QALHLNHPAPQNTEQGQYSLPFPVAAMLVHGSITAKELCGDELKNEEVLK
LSRIVECIEDKQMSEDYYKGRCACRVTVETKDGNIYESEDTVNAWSDPSD
EALSAKFRMNAGQTLPAEKVQQLLNLLWDLENVGSTTVFEDLLQYG*

spliced messenger RNA

>Gcaud1844.t1 ID=Gcaud1844.t1|Name=Gcaud1844.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:17895..19235+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCCATTTCTTTCATACACGATCTATCTTACGATAACATCTCACC
TCATACAATACATGCCACTAAGCGCCTTCTAGTCGACAACTTGGGTGTGT
GCATCACTGGTCGACAAACTGAATTAGCCCAACTGGCGTTCGATTTTGCA
GCTTCAGTATTCGCAGGGGATGCAACAGCACTATGGTTCGATGGACGCCG
AGTTTCATTGCCCGGAGCTTTGTTAGCGCATGCGTCTGCGTGCGATTCCG
TGGATGCGCATGATGGGTTTGCCAGATGTGACGGCCATCCTGGTGTCGCC
ATAATTCCAGCTGTCTTCTCAACGCTCCACACGAAAAACGGAGTAGTAAT
AGACGGTAAAGAGCTGCTCACTTCGACCGTCATGGCATATGAAATTTGCA
TACGAGCTGGAGCAGTTTTACACTCGACTTCGAGCGCCTACCACTCATCA
GGAGCTTGGAACGCGTTGGGCGTCGCAGCCATTTATGCTCGCCGTTTTAA
TCTCACAAGGGAACAAACCAGACACGCTTTAGGAATAGCGGAGTACAATG
CCCCAAGATCGTTGGTCATGCGCTGTGTGGATTATCCAACTATGATCAAG
GACGGCTCTGGATGGGGGGCGATGACTGGAATGTGTTCCGCCATGATGGC
GGAAAATGGATTCACAGGAGCACCGGCGACCATGGTTGAGACACATTTTG
ATAAGAGAAACTCGAAGAGTCAGGTTGTGATAAACGAGTGGGAAGACCTT
GGCAGAGTGTGGGCCCTGGAGCAACCGAGACTGAAGGAATTTCCAGTGTG
TTTCTGGGCCCAGGCACCGATTCAAGCAACAACGGCTCTTCAAGAGCGCC
ACAATTTCAAAAATCAAGACATAAGCAAGATCAGGGTCCTGACATATGAG
CAGGCACTTCACTTAAACCACCCGGCCCCGCAAAACACGGAACAGGGGCA
ATACAGTCTGCCATTCCCTGTGGCTGCTATGCTTGTACATGGATCAATAA
CAGCGAAAGAGCTCTGTGGAGACGAATTAAAGAATGAGGAAGTACTTAAA
TTATCACGGATAGTGGAATGCATAGAAGATAAGCAGATGTCAGAAGACTA
TTACAAAGGGCGATGCGCGTGTCGTGTAACTGTAGAGACCAAAGATGGGA
ATATATACGAATCTGAAGATACCGTGAACGCATGGTCGGATCCTTCCGAT
GAAGCTCTGAGCGCTAAGTTTCGCATGAATGCTGGGCAGACTTTACCAGC
CGAAAAGGTGCAACAGTTGCTCAACTTGCTATGGGATTTGGAGAATGTAG
GTTCGACAACAGTTTTTGAGGATTTGTTACAGTACGGGTAG

protein sequence of Gcaud1844.t1

>Gcaud1844.t1 ID=Gcaud1844.t1|Name=Gcaud1844.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=447bp
MDPISFIHDLSYDNISPHTIHATKRLLVDNLGVCITGRQTELAQLAFDFA
ASVFAGDATALWFDGRRVSLPGALLAHASACDSVDAHDGFARCDGHPGVA
IIPAVFSTLHTKNGVVIDGKELLTSTVMAYEICIRAGAVLHSTSSAYHSS
GAWNALGVAAIYARRFNLTREQTRHALGIAEYNAPRSLVMRCVDYPTMIK
DGSGWGAMTGMCSAMMAENGFTGAPATMVETHFDKRNSKSQVVINEWEDL
GRVWALEQPRLKEFPVCFWAQAPIQATTALQERHNFKNQDISKIRVLTYE
QALHLNHPAPQNTEQGQYSLPFPVAAMLVHGSITAKELCGDELKNEEVLK
LSRIVECIEDKQMSEDYYKGRCACRVTVETKDGNIYESEDTVNAWSDPSD
EALSAKFRMNAGQTLPAEKVQQLLNLLWDLENVGSTTVFEDLLQYG*

mRNA from alignment at NODE_207_length_37223_cov_4.468356:17895..19235+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1844.t1 ID=Gcaud1844.t1|Name=Gcaud1844.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:17895..19235+ (Gracilaria caudata M_176_S67 male)
ATGGATCCCATTTCTTTCATACACGATCTATCTTACGATAACATCTCACC
TCATACAATACATGCCACTAAGCGCCTTCTAGTCGACAACTTGGGTGTGT
GCATCACTGGTCGACAAACTGAATTAGCCCAACTGGCGTTCGATTTTGCA
GCTTCAGTATTCGCAGGGGATGCAACAGCACTATGGTTCGATGGACGCCG
AGTTTCATTGCCCGGAGCTTTGTTAGCGCATGCGTCTGCGTGCGATTCCG
TGGATGCGCATGATGGGTTTGCCAGATGTGACGGCCATCCTGGTGTCGCC
ATAATTCCAGCTGTCTTCTCAACGCTCCACACGAAAAACGGAGTAGTAAT
AGACGGTAAAGAGCTGCTCACTTCGACCGTCATGGCATATGAAATTTGCA
TACGAGCTGGAGCAGTTTTACACTCGACTTCGAGCGCCTACCACTCATCA
GGAGCTTGGAACGCGTTGGGCGTCGCAGCCATTTATGCTCGCCGTTTTAA
TCTCACAAGGGAACAAACCAGACACGCTTTAGGAATAGCGGAGTACAATG
CCCCAAGATCGTTGGTCATGCGCTGTGTGGATTATCCAACTATGATCAAG
GACGGCTCTGGATGGGGGGCGATGACTGGAATGTGTTCCGCCATGATGGC
GGAAAATGGATTCACAGGAGCACCGGCGACCATGGTTGAGACACATTTTG
ATAAGAGAAACTCGAAGAGTCAGGTTGTGATAAACGAGTGGGAAGACCTT
GGCAGAGTGTGGGCCCTGGAGCAACCGAGACTGAAGGAATTTCCAGTGTG
TTTCTGGGCCCAGGCACCGATTCAAGCAACAACGGCTCTTCAAGAGCGCC
ACAATTTCAAAAATCAAGACATAAGCAAGATCAGGGTCCTGACATATGAG
CAGGCACTTCACTTAAACCACCCGGCCCCGCAAAACACGGAACAGGGGCA
ATACAGTCTGCCATTCCCTGTGGCTGCTATGCTTGTACATGGATCAATAA
CAGCGAAAGAGCTCTGTGGAGACGAATTAAAGAATGAGGAAGTACTTAAA
TTATCACGGATAGTGGAATGCATAGAAGATAAGCAGATGTCAGAAGACTA
TTACAAAGGGCGATGCGCGTGTCGTGTAACTGTAGAGACCAAAGATGGGA
ATATATACGAATCTGAAGATACCGTGAACGCATGGTCGGATCCTTCCGAT
GAAGCTCTGAGCGCTAAGTTTCGCATGAATGCTGGGCAGACTTTACCAGC
CGAAAAGGTGCAACAGTTGCTCAACTTGCTATGGGATTTGGAGAATGTAG
GTTCGACAACAGTTTTTGAGGATTTGTTACAGTACGGGTAG

Coding sequence (CDS) from alignment at NODE_207_length_37223_cov_4.468356:17895..19235+

>Gcaud1844.t1 ID=Gcaud1844.t1|Name=Gcaud1844.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1341bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:17895..19235+ (Gracilaria caudata M_176_S67 male)
ATGGATCCCATTTCTTTCATACACGATCTATCTTACGATAACATCTCACC
TCATACAATACATGCCACTAAGCGCCTTCTAGTCGACAACTTGGGTGTGT
GCATCACTGGTCGACAAACTGAATTAGCCCAACTGGCGTTCGATTTTGCA
GCTTCAGTATTCGCAGGGGATGCAACAGCACTATGGTTCGATGGACGCCG
AGTTTCATTGCCCGGAGCTTTGTTAGCGCATGCGTCTGCGTGCGATTCCG
TGGATGCGCATGATGGGTTTGCCAGATGTGACGGCCATCCTGGTGTCGCC
ATAATTCCAGCTGTCTTCTCAACGCTCCACACGAAAAACGGAGTAGTAAT
AGACGGTAAAGAGCTGCTCACTTCGACCGTCATGGCATATGAAATTTGCA
TACGAGCTGGAGCAGTTTTACACTCGACTTCGAGCGCCTACCACTCATCA
GGAGCTTGGAACGCGTTGGGCGTCGCAGCCATTTATGCTCGCCGTTTTAA
TCTCACAAGGGAACAAACCAGACACGCTTTAGGAATAGCGGAGTACAATG
CCCCAAGATCGTTGGTCATGCGCTGTGTGGATTATCCAACTATGATCAAG
GACGGCTCTGGATGGGGGGCGATGACTGGAATGTGTTCCGCCATGATGGC
GGAAAATGGATTCACAGGAGCACCGGCGACCATGGTTGAGACACATTTTG
ATAAGAGAAACTCGAAGAGTCAGGTTGTGATAAACGAGTGGGAAGACCTT
GGCAGAGTGTGGGCCCTGGAGCAACCGAGACTGAAGGAATTTCCAGTGTG
TTTCTGGGCCCAGGCACCGATTCAAGCAACAACGGCTCTTCAAGAGCGCC
ACAATTTCAAAAATCAAGACATAAGCAAGATCAGGGTCCTGACATATGAG
CAGGCACTTCACTTAAACCACCCGGCCCCGCAAAACACGGAACAGGGGCA
ATACAGTCTGCCATTCCCTGTGGCTGCTATGCTTGTACATGGATCAATAA
CAGCGAAAGAGCTCTGTGGAGACGAATTAAAGAATGAGGAAGTACTTAAA
TTATCACGGATAGTGGAATGCATAGAAGATAAGCAGATGTCAGAAGACTA
TTACAAAGGGCGATGCGCGTGTCGTGTAACTGTAGAGACCAAAGATGGGA
ATATATACGAATCTGAAGATACCGTGAACGCATGGTCGGATCCTTCCGAT
GAAGCTCTGAGCGCTAAGTTTCGCATGAATGCTGGGCAGACTTTACCAGC
CGAAAAGGTGCAACAGTTGCTCAACTTGCTATGGGATTTGGAGAATGTAG
GTTCGACAACAGTTTTTGAGGATTTGTTACAGTACGGGTAG