Gcaud1843.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1843.t1
Unique Name	Gcaud1843.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	268

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_207_length_37223_cov_4.468356	contig	NODE_207_length_37223_cov_4.468356:16475..17278 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7739.XP_002596174.1
Preferred name	NNMT
PFAMs	NNMT_PNMT_TEMT
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00003,RC00060,RC00484,RC02501
KEGG ko	ko:K00541,ko:K00562
KEGG Reaction	R01269,R02174,R02910,R09370
KEGG Pathway	ko00380,ko00450,ko00760,ko01100,map00380,map00450,map00760,map01100
GOs	GO:0003674,GO:0003824,GO:0004790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008112,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008172,GO:0008757,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009308,GO:0009435,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0030748,GO:0030760,GO:0032259,GO:0034356,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0098615,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	5.82e-31
EggNOG OGs	KOG4564@1\|root,KOG4564@2759\|Eukaryota,39SE0@33154\|Opisthokonta,3BFI5@33208\|Metazoa,3CWRG@33213\|Bilateria,484VJ@7711\|Chordata
EC	2.1.1.1,2.1.1.49,2.1.1.96
Description	amine N-methyltransferase activity
COG category	M
BRITE	ko00000,ko00001,ko01000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1843	Gcaud1843	Gracilaria caudata M_176_S67 male	gene	NODE_207_length_37223_cov_4.468356 16475..17278 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1843.t1.stop1	Gcaud1843.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_207_length_37223_cov_4.468356 16475..16477 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1843.t1.CDS1	Gcaud1843.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_207_length_37223_cov_4.468356 16475..17278 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1843.t1.exon1	Gcaud1843.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_207_length_37223_cov_4.468356 16475..17278 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1843.t1.start1	Gcaud1843.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_207_length_37223_cov_4.468356 17276..17278 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1843.t1	Gcaud1843.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_207_length_37223_cov_4.468356 16475..17278 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_207_length_37223_cov_4.468356:16475..17278-
coding sequence from alignment at NODE_207_length_37223_cov_4.468356:16475..17278-

mRNA sequence

>Gcaud1843.t1 ID=Gcaud1843.t1|Name=Gcaud1843.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=268bp
MNMQSDFAAFEESFDCSAYLQKSYSNPNKSSETFDADARHFVMKEISDFY
RVHKVAFDGKAHLLEFGGGPVIAYLISAVPHASDIVFSDYCSSGCEAVRS
WKEKETNAHDWSPFFEYVVRELEGDTSPDAVHKRMDEMRAKISSIVHCDA
MASKPIGEGFDARFDAISISFCFESACRSHEDVVLVLRKLKKLLKPGGWI
RINGVYGGSYYLTKGKKFFNLTQTEESLRAAFRASGFECKTWGLFLNRKA
PANADYKGMYHATAQTM*

spliced messenger RNA

>Gcaud1843.t1 ID=Gcaud1843.t1|Name=Gcaud1843.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=804bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:16475..17278- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATGCAGTCGGATTTTGCTGCCTTTGAGGAATCCTTTGATTGCTC
GGCGTACCTTCAGAAAAGTTATTCGAATCCAAATAAGTCATCGGAGACTT
TTGACGCCGACGCGCGTCATTTTGTTATGAAAGAGATATCTGACTTTTAC
AGAGTCCACAAAGTAGCTTTCGATGGCAAAGCTCATCTTCTTGAATTTGG
GGGAGGACCTGTGATTGCCTACCTAATCAGCGCAGTACCGCACGCTTCAG
ATATTGTGTTCTCCGACTACTGCAGTAGTGGTTGTGAAGCAGTGAGATCA
TGGAAAGAGAAAGAAACCAATGCACATGATTGGAGCCCGTTTTTTGAATA
TGTGGTTCGGGAACTTGAAGGCGACACATCTCCGGACGCTGTTCACAAGC
GCATGGATGAAATGCGAGCCAAGATAAGTTCAATTGTACATTGTGACGCG
ATGGCAAGCAAGCCGATCGGAGAGGGATTTGATGCACGGTTTGATGCAAT
CTCTATTAGTTTTTGCTTCGAATCTGCTTGTAGGAGTCACGAAGATGTCG
TGTTAGTGTTACGGAAGTTGAAAAAGTTACTGAAGCCTGGTGGGTGGATT
CGTATTAACGGAGTATATGGAGGTTCGTATTATTTGACGAAGGGGAAGAA
ATTCTTTAATCTGACACAGACGGAGGAAAGCCTTCGGGCAGCCTTTCGAG
CCAGTGGGTTTGAGTGCAAAACGTGGGGTCTATTTCTGAACCGGAAAGCG
CCTGCGAATGCGGACTACAAAGGAATGTATCATGCAACTGCTCAAACAAT
GTAG

protein sequence of Gcaud1843.t1

>Gcaud1843.t1 ID=Gcaud1843.t1|Name=Gcaud1843.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=268bp
MNMQSDFAAFEESFDCSAYLQKSYSNPNKSSETFDADARHFVMKEISDFY
RVHKVAFDGKAHLLEFGGGPVIAYLISAVPHASDIVFSDYCSSGCEAVRS
WKEKETNAHDWSPFFEYVVRELEGDTSPDAVHKRMDEMRAKISSIVHCDA
MASKPIGEGFDARFDAISISFCFESACRSHEDVVLVLRKLKKLLKPGGWI
RINGVYGGSYYLTKGKKFFNLTQTEESLRAAFRASGFECKTWGLFLNRKA
PANADYKGMYHATAQTM*

mRNA from alignment at NODE_207_length_37223_cov_4.468356:16475..17278-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1843.t1 ID=Gcaud1843.t1|Name=Gcaud1843.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=804bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:16475..17278- (Gracilaria caudata M_176_S67 male)
ATGAACATGCAGTCGGATTTTGCTGCCTTTGAGGAATCCTTTGATTGCTC
GGCGTACCTTCAGAAAAGTTATTCGAATCCAAATAAGTCATCGGAGACTT
TTGACGCCGACGCGCGTCATTTTGTTATGAAAGAGATATCTGACTTTTAC
AGAGTCCACAAAGTAGCTTTCGATGGCAAAGCTCATCTTCTTGAATTTGG
GGGAGGACCTGTGATTGCCTACCTAATCAGCGCAGTACCGCACGCTTCAG
ATATTGTGTTCTCCGACTACTGCAGTAGTGGTTGTGAAGCAGTGAGATCA
TGGAAAGAGAAAGAAACCAATGCACATGATTGGAGCCCGTTTTTTGAATA
TGTGGTTCGGGAACTTGAAGGCGACACATCTCCGGACGCTGTTCACAAGC
GCATGGATGAAATGCGAGCCAAGATAAGTTCAATTGTACATTGTGACGCG
ATGGCAAGCAAGCCGATCGGAGAGGGATTTGATGCACGGTTTGATGCAAT
CTCTATTAGTTTTTGCTTCGAATCTGCTTGTAGGAGTCACGAAGATGTCG
TGTTAGTGTTACGGAAGTTGAAAAAGTTACTGAAGCCTGGTGGGTGGATT
CGTATTAACGGAGTATATGGAGGTTCGTATTATTTGACGAAGGGGAAGAA
ATTCTTTAATCTGACACAGACGGAGGAAAGCCTTCGGGCAGCCTTTCGAG
CCAGTGGGTTTGAGTGCAAAACGTGGGGTCTATTTCTGAACCGGAAAGCG
CCTGCGAATGCGGACTACAAAGGAATGTATCATGCAACTGCTCAAACAAT
GTAG

Coding sequence (CDS) from alignment at NODE_207_length_37223_cov_4.468356:16475..17278-

>Gcaud1843.t1 ID=Gcaud1843.t1|Name=Gcaud1843.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=804bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:16475..17278- (Gracilaria caudata M_176_S67 male)
ATGAACATGCAGTCGGATTTTGCTGCCTTTGAGGAATCCTTTGATTGCTC
GGCGTACCTTCAGAAAAGTTATTCGAATCCAAATAAGTCATCGGAGACTT
TTGACGCCGACGCGCGTCATTTTGTTATGAAAGAGATATCTGACTTTTAC
AGAGTCCACAAAGTAGCTTTCGATGGCAAAGCTCATCTTCTTGAATTTGG
GGGAGGACCTGTGATTGCCTACCTAATCAGCGCAGTACCGCACGCTTCAG
ATATTGTGTTCTCCGACTACTGCAGTAGTGGTTGTGAAGCAGTGAGATCA
TGGAAAGAGAAAGAAACCAATGCACATGATTGGAGCCCGTTTTTTGAATA
TGTGGTTCGGGAACTTGAAGGCGACACATCTCCGGACGCTGTTCACAAGC
GCATGGATGAAATGCGAGCCAAGATAAGTTCAATTGTACATTGTGACGCG
ATGGCAAGCAAGCCGATCGGAGAGGGATTTGATGCACGGTTTGATGCAAT
CTCTATTAGTTTTTGCTTCGAATCTGCTTGTAGGAGTCACGAAGATGTCG
TGTTAGTGTTACGGAAGTTGAAAAAGTTACTGAAGCCTGGTGGGTGGATT
CGTATTAACGGAGTATATGGAGGTTCGTATTATTTGACGAAGGGGAAGAA
ATTCTTTAATCTGACACAGACGGAGGAAAGCCTTCGGGCAGCCTTTCGAG
CCAGTGGGTTTGAGTGCAAAACGTGGGGTCTATTTCTGAACCGGAAAGCG
CCTGCGAATGCGGACTACAAAGGAATGTATCATGCAACTGCTCAAACAAT
GTAG