Gcaud1842.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1842.t1
Unique NameGcaud1842.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_207_length_37223_cov_4.468356contigNODE_207_length_37223_cov_4.468356:12825..13361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705874.1
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
KEGG koko:K11111
KEGG ModuleM00424
Evalue4.59e-14
EggNOG OGs2E4ZS@1|root,2SBUF@2759|Eukaryota
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryB
BRITEko00000,ko00002,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1842Gcaud1842Gracilaria caudata M_176_S67 malegeneNODE_207_length_37223_cov_4.468356 12825..13361 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1842.t1.stop1Gcaud1842.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_207_length_37223_cov_4.468356 12825..12827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1842.t1.CDS1Gcaud1842.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_207_length_37223_cov_4.468356 12825..13361 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1842.t1.exon1Gcaud1842.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_207_length_37223_cov_4.468356 12825..13361 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1842.t1.start1Gcaud1842.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_207_length_37223_cov_4.468356 13359..13361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1842.t1Gcaud1842.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_207_length_37223_cov_4.468356 12825..13361 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1842.t1 ID=Gcaud1842.t1|Name=Gcaud1842.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=179bp
MTSSATVQMNPSVKITGRTVAKATRKKGRRESYTRFSASEEAHLLEGVRK
YGAGKWKKILTCYEFHSKRTAVDLKDKYRNIIRAQEREKRQRLERMGITN
EKNGVDVAHLCNSFNRSSMAFGMGRVGGNANDPRVSVGGYNARSSTDGAS
VNGTEKRIEAPSAMKLTRLLCGPEGESC*
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spliced messenger RNA

>Gcaud1842.t1 ID=Gcaud1842.t1|Name=Gcaud1842.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=537bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:12825..13361- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCGAGCGCGACAGTGCAAATGAACCCATCAGTGAAGATTACCGG
CAGAACAGTGGCGAAAGCCACTCGCAAGAAGGGCCGACGTGAGAGCTACA
CACGGTTCTCGGCATCGGAAGAAGCTCATTTGCTGGAAGGTGTGCGGAAG
TATGGAGCAGGAAAGTGGAAGAAGATCCTGACTTGCTACGAGTTTCATAG
CAAGCGTACGGCAGTTGACTTAAAGGATAAGTATCGAAACATTATTCGCG
CGCAAGAGAGAGAGAAGAGACAAAGACTAGAAAGGATGGGCATTACGAAC
GAAAAGAATGGGGTCGATGTTGCTCATCTGTGCAATTCGTTTAACCGAAG
TAGTATGGCGTTTGGTATGGGCAGGGTAGGGGGCAACGCGAATGACCCGC
GGGTTTCAGTTGGTGGATACAATGCACGTAGCTCAACAGACGGAGCAAGT
GTGAACGGAACGGAAAAACGAATAGAAGCACCGTCTGCAATGAAGCTTAC
GAGATTACTTTGCGGACCAGAGGGGGAAAGCTGCTAG
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protein sequence of Gcaud1842.t1

>Gcaud1842.t1 ID=Gcaud1842.t1|Name=Gcaud1842.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=179bp
MTSSATVQMNPSVKITGRTVAKATRKKGRRESYTRFSASEEAHLLEGVRK
YGAGKWKKILTCYEFHSKRTAVDLKDKYRNIIRAQEREKRQRLERMGITN
EKNGVDVAHLCNSFNRSSMAFGMGRVGGNANDPRVSVGGYNARSSTDGAS
VNGTEKRIEAPSAMKLTRLLCGPEGESC*
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mRNA from alignment at NODE_207_length_37223_cov_4.468356:12825..13361-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1842.t1 ID=Gcaud1842.t1|Name=Gcaud1842.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=537bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:12825..13361- (Gracilaria caudata M_176_S67 male)
ATGACGTCGAGCGCGACAGTGCAAATGAACCCATCAGTGAAGATTACCGG
CAGAACAGTGGCGAAAGCCACTCGCAAGAAGGGCCGACGTGAGAGCTACA
CACGGTTCTCGGCATCGGAAGAAGCTCATTTGCTGGAAGGTGTGCGGAAG
TATGGAGCAGGAAAGTGGAAGAAGATCCTGACTTGCTACGAGTTTCATAG
CAAGCGTACGGCAGTTGACTTAAAGGATAAGTATCGAAACATTATTCGCG
CGCAAGAGAGAGAGAAGAGACAAAGACTAGAAAGGATGGGCATTACGAAC
GAAAAGAATGGGGTCGATGTTGCTCATCTGTGCAATTCGTTTAACCGAAG
TAGTATGGCGTTTGGTATGGGCAGGGTAGGGGGCAACGCGAATGACCCGC
GGGTTTCAGTTGGTGGATACAATGCACGTAGCTCAACAGACGGAGCAAGT
GTGAACGGAACGGAAAAACGAATAGAAGCACCGTCTGCAATGAAGCTTAC
GAGATTACTTTGCGGACCAGAGGGGGAAAGCTGCTAG
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Coding sequence (CDS) from alignment at NODE_207_length_37223_cov_4.468356:12825..13361-

>Gcaud1842.t1 ID=Gcaud1842.t1|Name=Gcaud1842.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=537bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:12825..13361- (Gracilaria caudata M_176_S67 male)
ATGACGTCGAGCGCGACAGTGCAAATGAACCCATCAGTGAAGATTACCGG
CAGAACAGTGGCGAAAGCCACTCGCAAGAAGGGCCGACGTGAGAGCTACA
CACGGTTCTCGGCATCGGAAGAAGCTCATTTGCTGGAAGGTGTGCGGAAG
TATGGAGCAGGAAAGTGGAAGAAGATCCTGACTTGCTACGAGTTTCATAG
CAAGCGTACGGCAGTTGACTTAAAGGATAAGTATCGAAACATTATTCGCG
CGCAAGAGAGAGAGAAGAGACAAAGACTAGAAAGGATGGGCATTACGAAC
GAAAAGAATGGGGTCGATGTTGCTCATCTGTGCAATTCGTTTAACCGAAG
TAGTATGGCGTTTGGTATGGGCAGGGTAGGGGGCAACGCGAATGACCCGC
GGGTTTCAGTTGGTGGATACAATGCACGTAGCTCAACAGACGGAGCAAGT
GTGAACGGAACGGAAAAACGAATAGAAGCACCGTCTGCAATGAAGCTTAC
GAGATTACTTTGCGGACCAGAGGGGGAAAGCTGCTAG
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