Gcaud1838.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1838.t1
Unique Name	Gcaud1838.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	378

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:74439..75572 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1838	Gcaud1838	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 74439..75572 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1838.t1.stop1	Gcaud1838.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 74439..74441 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1838.t1.CDS1	Gcaud1838.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 74439..75572 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1838.t1.exon1	Gcaud1838.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 74439..75572 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1838.t1.start1	Gcaud1838.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 75570..75572 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1838.t1	Gcaud1838.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 74439..75572 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:74439..75572-
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:74439..75572-

mRNA sequence

>Gcaud1838.t1 ID=Gcaud1838.t1|Name=Gcaud1838.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=378bp
MDPAVRFHPVGAPEDRDRQRQGGARSAVLAEPAMVPDGAANQHIDYGHSP
ARHGVSAARQSSVITALGRRDRSNPVLEEYKRTVHATVLEKSTLHDRTGG
GQSAADMVAEFGYSESTWLHRSVQLRKWFSFRELNRQPKFTTSDGDIAAF
VGYLANEGKVGPASIPQYLSAISRFHVQHNHPSPTKSQLVRDVVLAYTRK
QAANPSDRPARVGCDATTMRRVVEFGCECEDMQLVGACCATLFSFIFHLR
SVSSNNLMRSNLSITATTMELRINRRKGKQGQRPFSLRYWRHKNWHPAKN
PFALVRRWLRLTRNPHLFGISATSKPSLEESLSLALSATGIQAPSGGVYT
SHSPRIGSFNELLQLGFTRELIMHRFD*

spliced messenger RNA

>Gcaud1838.t1 ID=Gcaud1838.t1|Name=Gcaud1838.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:74439..75572- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCCGCCGTTCGATTTCATCCCGTTGGTGCTCCGGAAGATCGAGA
CCGACAACGCCAGGGGGGTGCTCGTAGTGCCGTTCTGGCCGAACCAGCAA
TGGTACCAGACGGTGCAGCGAATCAGCACATCGATTACGGTCACTCACCC
GCGCGACATGGGGTATCAGCTGCTCGTCAATCGAGCGTCATCACGGCTCT
GGGCCGTCGCGATCGCTCGAATCCGGTGCTAGAAGAGTACAAACGCACCG
TCCACGCTACAGTACTCGAAAAGTCCACACTTCATGACCGTACCGGAGGC
GGCCAGTCCGCCGCCGATATGGTGGCAGAGTTTGGATATTCAGAGAGTAC
GTGGCTCCATCGGAGCGTACAATTACGCAAATGGTTCTCCTTTAGAGAGC
TCAACCGGCAGCCAAAGTTTACTACTTCAGACGGAGATATCGCAGCCTTC
GTCGGATACCTGGCCAACGAAGGAAAGGTCGGCCCGGCCTCAATTCCCCA
GTATCTTTCGGCCATCTCTCGTTTTCACGTGCAGCACAACCATCCGTCCC
CAACCAAATCACAATTAGTTCGAGACGTAGTGCTCGCCTACACGCGAAAA
CAAGCGGCCAATCCTAGCGATCGACCAGCTCGAGTCGGCTGCGACGCCAC
TACTATGCGAAGGGTTGTCGAGTTTGGCTGTGAATGTGAGGACATGCAGC
TCGTCGGGGCCTGCTGTGCTACTTTGTTCAGCTTCATCTTTCATCTCCGT
TCAGTGAGCTCCAACAATCTCATGCGCTCTAACCTCAGTATTACAGCTAC
TACAATGGAACTCCGCATCAATCGTCGCAAAGGCAAACAGGGGCAAAGGC
CGTTCTCCCTGCGTTACTGGCGCCATAAAAATTGGCACCCCGCAAAGAAC
CCGTTTGCTCTAGTCCGCCGTTGGCTTCGTCTGACGCGAAATCCTCACCT
GTTTGGGATTTCTGCAACCTCCAAGCCGTCTTTAGAAGAATCCCTTTCTC
TGGCTCTTTCAGCCACCGGAATTCAAGCCCCATCAGGTGGTGTGTACACT
TCTCACAGTCCTCGTATAGGGTCTTTCAACGAACTCCTACAACTTGGATT
CACACGTGAGCTCATCATGCACCGATTTGACTGA

protein sequence of Gcaud1838.t1

>Gcaud1838.t1 ID=Gcaud1838.t1|Name=Gcaud1838.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=378bp
MDPAVRFHPVGAPEDRDRQRQGGARSAVLAEPAMVPDGAANQHIDYGHSP
ARHGVSAARQSSVITALGRRDRSNPVLEEYKRTVHATVLEKSTLHDRTGG
GQSAADMVAEFGYSESTWLHRSVQLRKWFSFRELNRQPKFTTSDGDIAAF
VGYLANEGKVGPASIPQYLSAISRFHVQHNHPSPTKSQLVRDVVLAYTRK
QAANPSDRPARVGCDATTMRRVVEFGCECEDMQLVGACCATLFSFIFHLR
SVSSNNLMRSNLSITATTMELRINRRKGKQGQRPFSLRYWRHKNWHPAKN
PFALVRRWLRLTRNPHLFGISATSKPSLEESLSLALSATGIQAPSGGVYT
SHSPRIGSFNELLQLGFTRELIMHRFD*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:74439..75572-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1838.t1 ID=Gcaud1838.t1|Name=Gcaud1838.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:74439..75572- (Gracilaria caudata M_176_S67 male)
ATGGACCCCGCCGTTCGATTTCATCCCGTTGGTGCTCCGGAAGATCGAGA
CCGACAACGCCAGGGGGGTGCTCGTAGTGCCGTTCTGGCCGAACCAGCAA
TGGTACCAGACGGTGCAGCGAATCAGCACATCGATTACGGTCACTCACCC
GCGCGACATGGGGTATCAGCTGCTCGTCAATCGAGCGTCATCACGGCTCT
GGGCCGTCGCGATCGCTCGAATCCGGTGCTAGAAGAGTACAAACGCACCG
TCCACGCTACAGTACTCGAAAAGTCCACACTTCATGACCGTACCGGAGGC
GGCCAGTCCGCCGCCGATATGGTGGCAGAGTTTGGATATTCAGAGAGTAC
GTGGCTCCATCGGAGCGTACAATTACGCAAATGGTTCTCCTTTAGAGAGC
TCAACCGGCAGCCAAAGTTTACTACTTCAGACGGAGATATCGCAGCCTTC
GTCGGATACCTGGCCAACGAAGGAAAGGTCGGCCCGGCCTCAATTCCCCA
GTATCTTTCGGCCATCTCTCGTTTTCACGTGCAGCACAACCATCCGTCCC
CAACCAAATCACAATTAGTTCGAGACGTAGTGCTCGCCTACACGCGAAAA
CAAGCGGCCAATCCTAGCGATCGACCAGCTCGAGTCGGCTGCGACGCCAC
TACTATGCGAAGGGTTGTCGAGTTTGGCTGTGAATGTGAGGACATGCAGC
TCGTCGGGGCCTGCTGTGCTACTTTGTTCAGCTTCATCTTTCATCTCCGT
TCAGTGAGCTCCAACAATCTCATGCGCTCTAACCTCAGTATTACAGCTAC
TACAATGGAACTCCGCATCAATCGTCGCAAAGGCAAACAGGGGCAAAGGC
CGTTCTCCCTGCGTTACTGGCGCCATAAAAATTGGCACCCCGCAAAGAAC
CCGTTTGCTCTAGTCCGCCGTTGGCTTCGTCTGACGCGAAATCCTCACCT
GTTTGGGATTTCTGCAACCTCCAAGCCGTCTTTAGAAGAATCCCTTTCTC
TGGCTCTTTCAGCCACCGGAATTCAAGCCCCATCAGGTGGTGTGTACACT
TCTCACAGTCCTCGTATAGGGTCTTTCAACGAACTCCTACAACTTGGATT
CACACGTGAGCTCATCATGCACCGATTTGACTGA

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:74439..75572-

>Gcaud1838.t1 ID=Gcaud1838.t1|Name=Gcaud1838.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1134bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:74439..75572- (Gracilaria caudata M_176_S67 male)
ATGGACCCCGCCGTTCGATTTCATCCCGTTGGTGCTCCGGAAGATCGAGA
CCGACAACGCCAGGGGGGTGCTCGTAGTGCCGTTCTGGCCGAACCAGCAA
TGGTACCAGACGGTGCAGCGAATCAGCACATCGATTACGGTCACTCACCC
GCGCGACATGGGGTATCAGCTGCTCGTCAATCGAGCGTCATCACGGCTCT
GGGCCGTCGCGATCGCTCGAATCCGGTGCTAGAAGAGTACAAACGCACCG
TCCACGCTACAGTACTCGAAAAGTCCACACTTCATGACCGTACCGGAGGC
GGCCAGTCCGCCGCCGATATGGTGGCAGAGTTTGGATATTCAGAGAGTAC
GTGGCTCCATCGGAGCGTACAATTACGCAAATGGTTCTCCTTTAGAGAGC
TCAACCGGCAGCCAAAGTTTACTACTTCAGACGGAGATATCGCAGCCTTC
GTCGGATACCTGGCCAACGAAGGAAAGGTCGGCCCGGCCTCAATTCCCCA
GTATCTTTCGGCCATCTCTCGTTTTCACGTGCAGCACAACCATCCGTCCC
CAACCAAATCACAATTAGTTCGAGACGTAGTGCTCGCCTACACGCGAAAA
CAAGCGGCCAATCCTAGCGATCGACCAGCTCGAGTCGGCTGCGACGCCAC
TACTATGCGAAGGGTTGTCGAGTTTGGCTGTGAATGTGAGGACATGCAGC
TCGTCGGGGCCTGCTGTGCTACTTTGTTCAGCTTCATCTTTCATCTCCGT
TCAGTGAGCTCCAACAATCTCATGCGCTCTAACCTCAGTATTACAGCTAC
TACAATGGAACTCCGCATCAATCGTCGCAAAGGCAAACAGGGGCAAAGGC
CGTTCTCCCTGCGTTACTGGCGCCATAAAAATTGGCACCCCGCAAAGAAC
CCGTTTGCTCTAGTCCGCCGTTGGCTTCGTCTGACGCGAAATCCTCACCT
GTTTGGGATTTCTGCAACCTCCAAGCCGTCTTTAGAAGAATCCCTTTCTC
TGGCTCTTTCAGCCACCGGAATTCAAGCCCCATCAGGTGGTGTGTACACT
TCTCACAGTCCTCGTATAGGGTCTTTCAACGAACTCCTACAACTTGGATT
CACACGTGAGCTCATCATGCACCGATTTGACTGA