Gcaud1837.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1837.t1
Unique Name	Gcaud1837.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	483

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:70851..72299 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	157072.XP_008880483.1
Preferred name	MBOAT1
PFAMs	MBOAT
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00037,RC00039
KEGG ko	ko:K13146,ko:K13517,ko:K13519
KEGG Reaction	R01318,R02241,R03437,R04480,R09034,R09035,R09036,R09381
KEGG Pathway	ko00561,ko00564,ko00565,ko01100,ko01110,map00561,map00564,map00565,map01100,map01110
KEGG Module	M00089
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0003841,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006575,GO:0006629,GO:0006644,GO:0006646,GO:0006650,GO:0006658,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0007009,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008150,GO:0008152,GO:0008354,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009653,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016411,GO:0016477,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030258,GO:0031224,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0036150,GO:0036151,GO:0036152,GO:0040011,GO:0042171,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045017,GO:0046337,GO:0046470,GO:0046474,GO:0046486,GO:0047144,GO:0047184,GO:0048232,GO:0048468,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051674,GO:0051704,GO:0061024,GO:0071617,GO:0071704,GO:0071840,GO:0090407,GO:0097164,GO:0098827,GO:1901564,GO:1901576
Evalue	7.95e-77
EggNOG OGs	COG5202@1\|root,KOG2704@2759\|Eukaryota
EC	2.3.1.23,2.3.1.51
Description	protein octanoylation
COG category	U
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1837	Gcaud1837	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 70851..72299 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1837.t1.start1	Gcaud1837.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 70851..70853 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1837.t1.CDS1	Gcaud1837.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 70851..72299 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1837.t1.exon1	Gcaud1837.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 70851..72299 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1837.t1.stop1	Gcaud1837.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 72297..72299 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1837.t1	Gcaud1837.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 70851..72299 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:70851..72299+
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:70851..72299+

mRNA sequence

>Gcaud1837.t1 ID=Gcaud1837.t1|Name=Gcaud1837.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp
MMPAAEMFTSLRDAVAAYDQALTPAPLLKGVDVLADVAAASAAEIRLFLC
LLLAYPVALSWRALPPGPSGLFRHVFSVVVGGWMLQFANGYQIVLNLSSC
LFCYFLMHLLGPRSARTVSVFAMTILACGHLYRQITDYLGWTLDWTLVAM
VTTQKIMGLAYNVQDGVDPNATPEQKSRSVSKIPSLLEFLSFILFPANVI
IGPAFEYSDYIAFATGKKVAPPPYLPGLWRLFQGLFYFVSHTAIALKFPC
GAMLTDKNFFKTGTFLSRYAAIEVGLLAVRFKYYFGWKIAEGSACMSGLG
FNGFDKTTGAEKWDRVENVNVWQYETSGSLRTSSQNWNKTTNLWLRRYVY
DRAPASVNLYFTYLVSAFWHGFYPGYYMFFLSVAAATMVHRQVRRTIRPR
FMIKDGKTHGPLMPLYSLISLVATHITLNYFIISFVLLAFNLSLDAFRGL
GFYGHWILLFSLILFNSGLIRPPAKKPAAKTE*

spliced messenger RNA

>Gcaud1837.t1 ID=Gcaud1837.t1|Name=Gcaud1837.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:70851..72299+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCCCGCAGCAGAGATGTTCACCTCCTTGCGTGATGCCGTTGCCGC
ATATGATCAGGCCCTCACGCCTGCGCCGCTTCTGAAGGGCGTCGATGTGC
TCGCCGACGTCGCCGCTGCCAGTGCCGCTGAGATTCGTCTGTTCTTATGC
TTGCTGCTGGCCTATCCTGTTGCGCTGTCTTGGCGAGCGCTTCCGCCAGG
CCCTTCTGGTTTGTTCCGTCATGTGTTTTCGGTCGTTGTCGGCGGCTGGA
TGCTTCAGTTTGCCAACGGCTACCAAATCGTCCTCAATCTGTCGTCATGT
CTCTTCTGCTACTTCCTCATGCACTTGCTCGGCCCACGCAGCGCAAGGAC
CGTGTCCGTCTTCGCCATGACAATTCTGGCATGCGGTCACCTGTACAGAC
AGATCACAGACTATCTCGGCTGGACGCTGGACTGGACACTCGTTGCTATG
GTCACCACCCAGAAAATCATGGGTCTTGCGTACAACGTGCAGGATGGCGT
GGACCCCAACGCCACACCTGAGCAAAAGTCACGATCCGTTAGCAAAATTC
CGTCGCTACTCGAGTTTTTGAGCTTCATTCTTTTCCCGGCAAACGTCATC
ATTGGTCCAGCTTTTGAGTACTCGGATTACATTGCGTTTGCCACCGGCAA
GAAGGTTGCACCCCCGCCCTACCTTCCGGGTCTTTGGCGATTGTTCCAGG
GACTCTTCTATTTTGTTTCTCACACTGCGATTGCGCTCAAGTTCCCGTGC
GGAGCGATGCTCACTGACAAAAACTTCTTTAAAACGGGAACCTTCCTGTC
CCGATATGCCGCCATTGAAGTTGGATTGCTTGCCGTGCGATTCAAGTACT
ACTTCGGATGGAAGATCGCGGAGGGTTCGGCATGCATGTCGGGCTTGGGT
TTCAACGGTTTTGATAAGACTACTGGGGCCGAGAAGTGGGACCGAGTGGA
GAACGTCAACGTGTGGCAATATGAAACCTCCGGTTCGTTGCGAACCTCCT
CGCAGAACTGGAACAAGACCACCAATCTGTGGTTGCGCCGCTACGTATAT
GACCGCGCCCCGGCGTCCGTCAACCTTTACTTCACGTACCTTGTGTCTGC
ATTCTGGCATGGTTTCTATCCAGGCTACTACATGTTTTTCCTGTCGGTCG
CGGCTGCTACTATGGTTCACCGACAAGTGCGACGCACAATTCGTCCGCGT
TTCATGATCAAAGACGGAAAGACGCATGGACCGCTCATGCCGCTCTACTC
GTTGATCTCACTCGTGGCGACGCACATTACTCTTAACTACTTCATCATAT
CGTTTGTGTTGCTCGCGTTTAACCTTTCTCTTGACGCGTTTAGAGGCCTT
GGCTTCTACGGACATTGGATTCTACTCTTCTCGCTTATTTTGTTCAACTC
CGGACTTATCCGACCGCCAGCGAAGAAGCCCGCAGCGAAGACTGAGTAA

protein sequence of Gcaud1837.t1

>Gcaud1837.t1 ID=Gcaud1837.t1|Name=Gcaud1837.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=483bp
MMPAAEMFTSLRDAVAAYDQALTPAPLLKGVDVLADVAAASAAEIRLFLC
LLLAYPVALSWRALPPGPSGLFRHVFSVVVGGWMLQFANGYQIVLNLSSC
LFCYFLMHLLGPRSARTVSVFAMTILACGHLYRQITDYLGWTLDWTLVAM
VTTQKIMGLAYNVQDGVDPNATPEQKSRSVSKIPSLLEFLSFILFPANVI
IGPAFEYSDYIAFATGKKVAPPPYLPGLWRLFQGLFYFVSHTAIALKFPC
GAMLTDKNFFKTGTFLSRYAAIEVGLLAVRFKYYFGWKIAEGSACMSGLG
FNGFDKTTGAEKWDRVENVNVWQYETSGSLRTSSQNWNKTTNLWLRRYVY
DRAPASVNLYFTYLVSAFWHGFYPGYYMFFLSVAAATMVHRQVRRTIRPR
FMIKDGKTHGPLMPLYSLISLVATHITLNYFIISFVLLAFNLSLDAFRGL
GFYGHWILLFSLILFNSGLIRPPAKKPAAKTE*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:70851..72299+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1837.t1 ID=Gcaud1837.t1|Name=Gcaud1837.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:70851..72299+ (Gracilaria caudata M_176_S67 male)
ATGATGCCCGCAGCAGAGATGTTCACCTCCTTGCGTGATGCCGTTGCCGC
ATATGATCAGGCCCTCACGCCTGCGCCGCTTCTGAAGGGCGTCGATGTGC
TCGCCGACGTCGCCGCTGCCAGTGCCGCTGAGATTCGTCTGTTCTTATGC
TTGCTGCTGGCCTATCCTGTTGCGCTGTCTTGGCGAGCGCTTCCGCCAGG
CCCTTCTGGTTTGTTCCGTCATGTGTTTTCGGTCGTTGTCGGCGGCTGGA
TGCTTCAGTTTGCCAACGGCTACCAAATCGTCCTCAATCTGTCGTCATGT
CTCTTCTGCTACTTCCTCATGCACTTGCTCGGCCCACGCAGCGCAAGGAC
CGTGTCCGTCTTCGCCATGACAATTCTGGCATGCGGTCACCTGTACAGAC
AGATCACAGACTATCTCGGCTGGACGCTGGACTGGACACTCGTTGCTATG
GTCACCACCCAGAAAATCATGGGTCTTGCGTACAACGTGCAGGATGGCGT
GGACCCCAACGCCACACCTGAGCAAAAGTCACGATCCGTTAGCAAAATTC
CGTCGCTACTCGAGTTTTTGAGCTTCATTCTTTTCCCGGCAAACGTCATC
ATTGGTCCAGCTTTTGAGTACTCGGATTACATTGCGTTTGCCACCGGCAA
GAAGGTTGCACCCCCGCCCTACCTTCCGGGTCTTTGGCGATTGTTCCAGG
GACTCTTCTATTTTGTTTCTCACACTGCGATTGCGCTCAAGTTCCCGTGC
GGAGCGATGCTCACTGACAAAAACTTCTTTAAAACGGGAACCTTCCTGTC
CCGATATGCCGCCATTGAAGTTGGATTGCTTGCCGTGCGATTCAAGTACT
ACTTCGGATGGAAGATCGCGGAGGGTTCGGCATGCATGTCGGGCTTGGGT
TTCAACGGTTTTGATAAGACTACTGGGGCCGAGAAGTGGGACCGAGTGGA
GAACGTCAACGTGTGGCAATATGAAACCTCCGGTTCGTTGCGAACCTCCT
CGCAGAACTGGAACAAGACCACCAATCTGTGGTTGCGCCGCTACGTATAT
GACCGCGCCCCGGCGTCCGTCAACCTTTACTTCACGTACCTTGTGTCTGC
ATTCTGGCATGGTTTCTATCCAGGCTACTACATGTTTTTCCTGTCGGTCG
CGGCTGCTACTATGGTTCACCGACAAGTGCGACGCACAATTCGTCCGCGT
TTCATGATCAAAGACGGAAAGACGCATGGACCGCTCATGCCGCTCTACTC
GTTGATCTCACTCGTGGCGACGCACATTACTCTTAACTACTTCATCATAT
CGTTTGTGTTGCTCGCGTTTAACCTTTCTCTTGACGCGTTTAGAGGCCTT
GGCTTCTACGGACATTGGATTCTACTCTTCTCGCTTATTTTGTTCAACTC
CGGACTTATCCGACCGCCAGCGAAGAAGCCCGCAGCGAAGACTGAGTAA

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:70851..72299+

>Gcaud1837.t1 ID=Gcaud1837.t1|Name=Gcaud1837.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1449bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:70851..72299+ (Gracilaria caudata M_176_S67 male)
ATGATGCCCGCAGCAGAGATGTTCACCTCCTTGCGTGATGCCGTTGCCGC
ATATGATCAGGCCCTCACGCCTGCGCCGCTTCTGAAGGGCGTCGATGTGC
TCGCCGACGTCGCCGCTGCCAGTGCCGCTGAGATTCGTCTGTTCTTATGC
TTGCTGCTGGCCTATCCTGTTGCGCTGTCTTGGCGAGCGCTTCCGCCAGG
CCCTTCTGGTTTGTTCCGTCATGTGTTTTCGGTCGTTGTCGGCGGCTGGA
TGCTTCAGTTTGCCAACGGCTACCAAATCGTCCTCAATCTGTCGTCATGT
CTCTTCTGCTACTTCCTCATGCACTTGCTCGGCCCACGCAGCGCAAGGAC
CGTGTCCGTCTTCGCCATGACAATTCTGGCATGCGGTCACCTGTACAGAC
AGATCACAGACTATCTCGGCTGGACGCTGGACTGGACACTCGTTGCTATG
GTCACCACCCAGAAAATCATGGGTCTTGCGTACAACGTGCAGGATGGCGT
GGACCCCAACGCCACACCTGAGCAAAAGTCACGATCCGTTAGCAAAATTC
CGTCGCTACTCGAGTTTTTGAGCTTCATTCTTTTCCCGGCAAACGTCATC
ATTGGTCCAGCTTTTGAGTACTCGGATTACATTGCGTTTGCCACCGGCAA
GAAGGTTGCACCCCCGCCCTACCTTCCGGGTCTTTGGCGATTGTTCCAGG
GACTCTTCTATTTTGTTTCTCACACTGCGATTGCGCTCAAGTTCCCGTGC
GGAGCGATGCTCACTGACAAAAACTTCTTTAAAACGGGAACCTTCCTGTC
CCGATATGCCGCCATTGAAGTTGGATTGCTTGCCGTGCGATTCAAGTACT
ACTTCGGATGGAAGATCGCGGAGGGTTCGGCATGCATGTCGGGCTTGGGT
TTCAACGGTTTTGATAAGACTACTGGGGCCGAGAAGTGGGACCGAGTGGA
GAACGTCAACGTGTGGCAATATGAAACCTCCGGTTCGTTGCGAACCTCCT
CGCAGAACTGGAACAAGACCACCAATCTGTGGTTGCGCCGCTACGTATAT
GACCGCGCCCCGGCGTCCGTCAACCTTTACTTCACGTACCTTGTGTCTGC
ATTCTGGCATGGTTTCTATCCAGGCTACTACATGTTTTTCCTGTCGGTCG
CGGCTGCTACTATGGTTCACCGACAAGTGCGACGCACAATTCGTCCGCGT
TTCATGATCAAAGACGGAAAGACGCATGGACCGCTCATGCCGCTCTACTC
GTTGATCTCACTCGTGGCGACGCACATTACTCTTAACTACTTCATCATAT
CGTTTGTGTTGCTCGCGTTTAACCTTTCTCTTGACGCGTTTAGAGGCCTT
GGCTTCTACGGACATTGGATTCTACTCTTCTCGCTTATTTTGTTCAACTC
CGGACTTATCCGACCGCCAGCGAAGAAGCCCGCAGCGAAGACTGAGTAA