Gcaud1834.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1834.t1
Unique Name	Gcaud1834.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	422

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:65395..66660 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45351.EDO36338
Preferred name	MEPCE
PFAMs	Bin3,Methyltransf_25,Methyltransf_31
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K15190
GOs	GO:0000122,GO:0001085,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006357,GO:0006417,GO:0006725,GO:0006807,GO:0006996,GO:0007346,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016073,GO:0016458,GO:0016740,GO:0016741,GO:0017069,GO:0017148,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032259,GO:0032268,GO:0032269,GO:0032502,GO:0034248,GO:0034249,GO:0034401,GO:0034641,GO:0034660,GO:0035561,GO:0035562,GO:0040029,GO:0040031,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045787,GO:0045814,GO:0045892,GO:0045931,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051098,GO:0051100,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070828,GO:0070868,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:0097549,GO:0140098,GO:1900087,GO:1901360,GO:1901363,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902679,GO:1902806,GO:1902808,GO:1903506,GO:1903507,GO:2000045,GO:2000112,GO:2000113,GO:2001141
Evalue	1.14e-39
EggNOG OGs	KOG2899@1\|root,KOG2899@2759\|Eukaryota,39UCR@33154\|Opisthokonta,3BFEW@33208\|Metazoa
Description	snRNA modification
COG category	S
BRITE	ko00000,ko01000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1834	Gcaud1834	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 65395..66660 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1834.t1.start1	Gcaud1834.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 65395..65397 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1834.t1.CDS1	Gcaud1834.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 65395..66660 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1834.t1.exon1	Gcaud1834.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 65395..66660 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1834.t1.stop1	Gcaud1834.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 66658..66660 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1834.t1	Gcaud1834.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 65395..66660 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:65395..66660+
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:65395..66660+

mRNA sequence

>Gcaud1834.t1 ID=Gcaud1834.t1|Name=Gcaud1834.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=422bp
MCSPAKADNVSDKSKKQPSRKRPRPPSNTPSVLRSAKKPRDQGKPSTAVV
QANTSGKPTKHGSYRNYYNRRLRGNDPSTDDRLPLIRQLCDTYERFSVLD
VGCNDGKLTIEVARHSRCVRAVGVDIDAKLIRSARGSLRHHVQQQMNENK
ANTKHASSRSVSFPFNTAFRIEDLSTEQASQSQSLPEEYHVVLCLSVTKW
VHINGGDQALQRLFHRMYKSLKPGGVLILEPQPVKSYKLARQKGLAPKES
SFDHLKMKPSMFSNFLLEQCGFSDVRMLRDKSHSGKAFNRPIYAFFKGKD
ATSLRLFDESRSLQRSTIKQKGESQEIAVPESKSGSKESEPSAIAGETAP
NGIEGKRYKKKSKLKRKNIATAEPGSKLSNEGNTRPATAGETAPNGVEGK
RNDKKSRRQGESISIEPKGAS*

spliced messenger RNA

>Gcaud1834.t1 ID=Gcaud1834.t1|Name=Gcaud1834.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1266bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:65395..66660+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTTCGCCGGCTAAGGCCGACAATGTGTCCGACAAATCCAAAAAGCA
GCCATCCCGAAAGCGTCCGCGCCCGCCGTCGAACACCCCTTCGGTTCTAA
GGTCTGCAAAGAAACCTCGAGATCAAGGCAAGCCGAGTACCGCTGTGGTA
CAAGCAAATACTTCGGGTAAGCCAACCAAGCATGGCAGCTACCGCAACTA
CTACAACCGCCGTCTTCGCGGGAACGACCCGAGCACAGATGATCGACTTC
CGCTCATACGACAACTGTGCGACACATACGAGAGGTTCAGTGTGCTTGAT
GTGGGATGTAATGACGGAAAGCTGACTATAGAAGTAGCTCGACACTCGCG
CTGCGTTAGAGCGGTCGGAGTTGACATTGACGCAAAGCTTATTAGGAGCG
CCCGCGGTTCTCTGCGACATCACGTGCAGCAACAAATGAATGAGAACAAG
GCTAATACAAAACATGCCTCCTCACGTTCTGTTTCGTTTCCGTTCAACAC
TGCATTTCGCATAGAGGATTTGTCGACAGAACAAGCTTCACAATCGCAAT
CACTTCCCGAAGAGTACCATGTTGTACTTTGCCTAAGCGTGACTAAATGG
GTACATATCAATGGTGGTGATCAAGCATTACAAAGATTATTTCATCGCAT
GTACAAATCTTTGAAGCCTGGTGGCGTGCTCATATTAGAGCCTCAGCCAG
TAAAGAGCTACAAACTCGCCAGACAAAAGGGACTGGCACCCAAGGAGAGC
TCTTTCGACCACTTGAAAATGAAACCTAGCATGTTTTCGAACTTTCTCCT
TGAGCAATGTGGCTTCAGCGACGTTCGCATGTTAAGAGACAAAAGTCATT
CTGGGAAAGCGTTCAATAGACCCATATATGCGTTCTTTAAAGGAAAAGAT
GCAACTTCATTAAGACTCTTTGATGAATCTAGAAGTTTGCAACGCAGTAC
TATCAAACAAAAAGGAGAGTCGCAAGAGATCGCAGTGCCCGAATCCAAAT
CCGGCAGCAAAGAGAGTGAACCTTCTGCAATTGCTGGCGAGACAGCGCCG
AACGGCATCGAAGGCAAACGATACAAAAAAAAGTCGAAATTGAAACGCAA
AAATATAGCTACTGCAGAGCCCGGCTCCAAACTGAGCAACGAAGGCAACA
CGCGTCCCGCAACTGCTGGCGAAACAGCGCCGAACGGCGTCGAAGGCAAA
CGGAACGACAAAAAGTCGAGAAGGCAAGGCGAAAGTATATCTATCGAACC
CAAAGGCGCATCATGA

protein sequence of Gcaud1834.t1

>Gcaud1834.t1 ID=Gcaud1834.t1|Name=Gcaud1834.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=422bp
MCSPAKADNVSDKSKKQPSRKRPRPPSNTPSVLRSAKKPRDQGKPSTAVV
QANTSGKPTKHGSYRNYYNRRLRGNDPSTDDRLPLIRQLCDTYERFSVLD
VGCNDGKLTIEVARHSRCVRAVGVDIDAKLIRSARGSLRHHVQQQMNENK
ANTKHASSRSVSFPFNTAFRIEDLSTEQASQSQSLPEEYHVVLCLSVTKW
VHINGGDQALQRLFHRMYKSLKPGGVLILEPQPVKSYKLARQKGLAPKES
SFDHLKMKPSMFSNFLLEQCGFSDVRMLRDKSHSGKAFNRPIYAFFKGKD
ATSLRLFDESRSLQRSTIKQKGESQEIAVPESKSGSKESEPSAIAGETAP
NGIEGKRYKKKSKLKRKNIATAEPGSKLSNEGNTRPATAGETAPNGVEGK
RNDKKSRRQGESISIEPKGAS*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:65395..66660+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1834.t1 ID=Gcaud1834.t1|Name=Gcaud1834.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1266bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:65395..66660+ (Gracilaria caudata M_176_S67 male)
ATGTGTTCGCCGGCTAAGGCCGACAATGTGTCCGACAAATCCAAAAAGCA
GCCATCCCGAAAGCGTCCGCGCCCGCCGTCGAACACCCCTTCGGTTCTAA
GGTCTGCAAAGAAACCTCGAGATCAAGGCAAGCCGAGTACCGCTGTGGTA
CAAGCAAATACTTCGGGTAAGCCAACCAAGCATGGCAGCTACCGCAACTA
CTACAACCGCCGTCTTCGCGGGAACGACCCGAGCACAGATGATCGACTTC
CGCTCATACGACAACTGTGCGACACATACGAGAGGTTCAGTGTGCTTGAT
GTGGGATGTAATGACGGAAAGCTGACTATAGAAGTAGCTCGACACTCGCG
CTGCGTTAGAGCGGTCGGAGTTGACATTGACGCAAAGCTTATTAGGAGCG
CCCGCGGTTCTCTGCGACATCACGTGCAGCAACAAATGAATGAGAACAAG
GCTAATACAAAACATGCCTCCTCACGTTCTGTTTCGTTTCCGTTCAACAC
TGCATTTCGCATAGAGGATTTGTCGACAGAACAAGCTTCACAATCGCAAT
CACTTCCCGAAGAGTACCATGTTGTACTTTGCCTAAGCGTGACTAAATGG
GTACATATCAATGGTGGTGATCAAGCATTACAAAGATTATTTCATCGCAT
GTACAAATCTTTGAAGCCTGGTGGCGTGCTCATATTAGAGCCTCAGCCAG
TAAAGAGCTACAAACTCGCCAGACAAAAGGGACTGGCACCCAAGGAGAGC
TCTTTCGACCACTTGAAAATGAAACCTAGCATGTTTTCGAACTTTCTCCT
TGAGCAATGTGGCTTCAGCGACGTTCGCATGTTAAGAGACAAAAGTCATT
CTGGGAAAGCGTTCAATAGACCCATATATGCGTTCTTTAAAGGAAAAGAT
GCAACTTCATTAAGACTCTTTGATGAATCTAGAAGTTTGCAACGCAGTAC
TATCAAACAAAAAGGAGAGTCGCAAGAGATCGCAGTGCCCGAATCCAAAT
CCGGCAGCAAAGAGAGTGAACCTTCTGCAATTGCTGGCGAGACAGCGCCG
AACGGCATCGAAGGCAAACGATACAAAAAAAAGTCGAAATTGAAACGCAA
AAATATAGCTACTGCAGAGCCCGGCTCCAAACTGAGCAACGAAGGCAACA
CGCGTCCCGCAACTGCTGGCGAAACAGCGCCGAACGGCGTCGAAGGCAAA
CGGAACGACAAAAAGTCGAGAAGGCAAGGCGAAAGTATATCTATCGAACC
CAAAGGCGCATCATGA

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:65395..66660+

>Gcaud1834.t1 ID=Gcaud1834.t1|Name=Gcaud1834.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1266bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:65395..66660+ (Gracilaria caudata M_176_S67 male)
ATGTGTTCGCCGGCTAAGGCCGACAATGTGTCCGACAAATCCAAAAAGCA
GCCATCCCGAAAGCGTCCGCGCCCGCCGTCGAACACCCCTTCGGTTCTAA
GGTCTGCAAAGAAACCTCGAGATCAAGGCAAGCCGAGTACCGCTGTGGTA
CAAGCAAATACTTCGGGTAAGCCAACCAAGCATGGCAGCTACCGCAACTA
CTACAACCGCCGTCTTCGCGGGAACGACCCGAGCACAGATGATCGACTTC
CGCTCATACGACAACTGTGCGACACATACGAGAGGTTCAGTGTGCTTGAT
GTGGGATGTAATGACGGAAAGCTGACTATAGAAGTAGCTCGACACTCGCG
CTGCGTTAGAGCGGTCGGAGTTGACATTGACGCAAAGCTTATTAGGAGCG
CCCGCGGTTCTCTGCGACATCACGTGCAGCAACAAATGAATGAGAACAAG
GCTAATACAAAACATGCCTCCTCACGTTCTGTTTCGTTTCCGTTCAACAC
TGCATTTCGCATAGAGGATTTGTCGACAGAACAAGCTTCACAATCGCAAT
CACTTCCCGAAGAGTACCATGTTGTACTTTGCCTAAGCGTGACTAAATGG
GTACATATCAATGGTGGTGATCAAGCATTACAAAGATTATTTCATCGCAT
GTACAAATCTTTGAAGCCTGGTGGCGTGCTCATATTAGAGCCTCAGCCAG
TAAAGAGCTACAAACTCGCCAGACAAAAGGGACTGGCACCCAAGGAGAGC
TCTTTCGACCACTTGAAAATGAAACCTAGCATGTTTTCGAACTTTCTCCT
TGAGCAATGTGGCTTCAGCGACGTTCGCATGTTAAGAGACAAAAGTCATT
CTGGGAAAGCGTTCAATAGACCCATATATGCGTTCTTTAAAGGAAAAGAT
GCAACTTCATTAAGACTCTTTGATGAATCTAGAAGTTTGCAACGCAGTAC
TATCAAACAAAAAGGAGAGTCGCAAGAGATCGCAGTGCCCGAATCCAAAT
CCGGCAGCAAAGAGAGTGAACCTTCTGCAATTGCTGGCGAGACAGCGCCG
AACGGCATCGAAGGCAAACGATACAAAAAAAAGTCGAAATTGAAACGCAA
AAATATAGCTACTGCAGAGCCCGGCTCCAAACTGAGCAACGAAGGCAACA
CGCGTCCCGCAACTGCTGGCGAAACAGCGCCGAACGGCGTCGAAGGCAAA
CGGAACGACAAAAAGTCGAGAAGGCAAGGCGAAAGTATATCTATCGAACC
CAAAGGCGCATCATGA