Gcaud1832.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1832.t1
Unique Name	Gcaud1832.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	506

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:59862..61379 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707948.1
PFAMs	DUF3395,DnaJ
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02288,ko:K09531
KEGG Pathway	ko00196,ko01100,map00196,map01100
Evalue	1.82e-89
EggNOG OGs	COG0484@1\|root,KOG0718@2759\|Eukaryota
EC	4.4.1.32
Description	response to very low light intensity stimulus
COG category	O
BRITE	ko00000,ko00001,ko00194,ko01000,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1832	Gcaud1832	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 59862..61379 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1832.t1.start1	Gcaud1832.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 59862..59864 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1832.t1.CDS1	Gcaud1832.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 59862..61379 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1832.t1.exon1	Gcaud1832.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 59862..61379 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1832.t1.stop1	Gcaud1832.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 61377..61379 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1832.t1	Gcaud1832.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 59862..61379 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:59862..61379+
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:59862..61379+

mRNA sequence

>Gcaud1832.t1 ID=Gcaud1832.t1|Name=Gcaud1832.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=506bp
MASAFMPPIPIPNLKRKGLKCARRRSTLQATLPSDSKPSLYSILGLDSNN
PSSVTSSQIRKAYLILAKQTHPDTVQNTISSSFDRISHAYTVLSDPELRS
VYDQTGHEGLAAIKSIQQRAEQIRDKFSSMSGEQLDFLCDSGELVGGLLS
SSSDDEAFDPSSVSHEDACPRSVQEAIWNIQFHPDRSVRYYGLWWIYKFK
VTAAEAALVNVLQTSNDQTSLGGYGIRRRAALALGAVAAAPTESNQAAVI
ALSDALRSPDYFLRYRAAEAMSNIAQRCARSRQQFSFPRSATYQLKLLLS
KGQKKFALKEEAKSGFTQQESLFDLENLDPSLREKLEAIFRERRENEKRS
RRTTMTPQLGVEAVGSSSDEPYEWLLKAVSAVCANQISHLDDQLLKIIES
YTSNSTPLVRYAAHKALYAITGAEQHAQQIVRALEYGVEHHYSQRVLIRD
LGDLGYSKGAEAVALCPMVENSFKILALKNMLAKQEHDPTTQEVRDVLTH
MDSLL*

spliced messenger RNA

>Gcaud1832.t1 ID=Gcaud1832.t1|Name=Gcaud1832.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:59862..61379+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTGCTTTCATGCCGCCGATTCCAATTCCAAATCTTAAGCGTAA
GGGTTTAAAATGCGCACGCCGTCGGAGCACGCTGCAAGCGACTCTGCCCT
CAGACTCGAAGCCTTCCCTTTACTCGATTCTCGGCCTAGACAGTAACAAC
CCTTCTTCCGTTACAAGTTCTCAGATTCGGAAAGCATATCTTATCCTTGC
TAAGCAGACTCATCCGGACACAGTTCAGAACACCATCTCGTCGTCATTTG
ACCGGATATCACACGCGTATACTGTACTTAGCGATCCCGAGCTCCGTTCC
GTCTATGATCAAACTGGTCATGAAGGGCTTGCAGCTATCAAGAGCATACA
ACAACGTGCTGAACAGATACGGGACAAGTTCTCTTCAATGTCCGGAGAGC
AGCTCGACTTCCTTTGCGACTCTGGTGAGTTGGTTGGCGGACTCTTGTCA
TCTTCTTCAGATGACGAAGCATTTGATCCATCCAGCGTATCCCATGAAGA
TGCCTGTCCACGTTCTGTCCAGGAGGCAATTTGGAACATTCAGTTCCACC
CAGATCGCAGTGTGCGATACTACGGTCTGTGGTGGATATACAAGTTCAAA
GTTACGGCTGCGGAGGCAGCTCTTGTTAACGTTTTGCAAACATCCAACGA
CCAAACGAGTCTAGGCGGATACGGAATTCGACGTCGAGCTGCCTTGGCAC
TTGGAGCTGTTGCTGCGGCGCCCACTGAATCCAACCAAGCTGCGGTAATC
GCTCTTTCCGACGCACTTCGGAGTCCCGATTATTTCTTGAGATATCGAGC
TGCCGAAGCGATGTCAAACATCGCACAACGATGTGCACGTTCGCGACAAC
AGTTTTCCTTTCCACGGAGTGCAACGTATCAGCTGAAACTGCTTCTATCC
AAGGGCCAGAAAAAGTTTGCTTTGAAAGAAGAGGCTAAGTCGGGGTTCAC
TCAACAAGAAAGTCTCTTCGACCTCGAAAATCTTGATCCCTCTTTGCGTG
AGAAGCTCGAAGCCATTTTCAGAGAAAGACGAGAAAATGAGAAGCGAAGC
AGAAGGACAACGATGACGCCACAGCTTGGTGTGGAAGCAGTGGGCTCCAG
TTCAGATGAACCTTACGAATGGCTGCTCAAAGCGGTATCAGCCGTGTGCG
CGAATCAGATATCTCATCTTGACGATCAGTTGCTCAAGATTATTGAGTCC
TACACATCCAATTCAACACCATTAGTGCGTTATGCCGCACATAAGGCACT
TTACGCCATAACCGGGGCAGAGCAGCATGCGCAACAAATTGTGCGAGCGC
TGGAGTATGGGGTGGAACATCATTATTCTCAAAGAGTTCTTATTCGAGAT
CTTGGAGACTTAGGGTACTCAAAAGGAGCAGAAGCTGTGGCTCTTTGTCC
AATGGTGGAGAACAGTTTCAAAATTCTAGCTTTGAAGAATATGCTTGCAA
AACAGGAGCACGACCCAACCACTCAAGAAGTGAGAGATGTGCTCACTCAC
ATGGACTCCCTTCTGTAG

protein sequence of Gcaud1832.t1

>Gcaud1832.t1 ID=Gcaud1832.t1|Name=Gcaud1832.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=506bp
MASAFMPPIPIPNLKRKGLKCARRRSTLQATLPSDSKPSLYSILGLDSNN
PSSVTSSQIRKAYLILAKQTHPDTVQNTISSSFDRISHAYTVLSDPELRS
VYDQTGHEGLAAIKSIQQRAEQIRDKFSSMSGEQLDFLCDSGELVGGLLS
SSSDDEAFDPSSVSHEDACPRSVQEAIWNIQFHPDRSVRYYGLWWIYKFK
VTAAEAALVNVLQTSNDQTSLGGYGIRRRAALALGAVAAAPTESNQAAVI
ALSDALRSPDYFLRYRAAEAMSNIAQRCARSRQQFSFPRSATYQLKLLLS
KGQKKFALKEEAKSGFTQQESLFDLENLDPSLREKLEAIFRERRENEKRS
RRTTMTPQLGVEAVGSSSDEPYEWLLKAVSAVCANQISHLDDQLLKIIES
YTSNSTPLVRYAAHKALYAITGAEQHAQQIVRALEYGVEHHYSQRVLIRD
LGDLGYSKGAEAVALCPMVENSFKILALKNMLAKQEHDPTTQEVRDVLTH
MDSLL*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:59862..61379+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1832.t1 ID=Gcaud1832.t1|Name=Gcaud1832.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:59862..61379+ (Gracilaria caudata M_176_S67 male)
ATGGCGTCTGCTTTCATGCCGCCGATTCCAATTCCAAATCTTAAGCGTAA
GGGTTTAAAATGCGCACGCCGTCGGAGCACGCTGCAAGCGACTCTGCCCT
CAGACTCGAAGCCTTCCCTTTACTCGATTCTCGGCCTAGACAGTAACAAC
CCTTCTTCCGTTACAAGTTCTCAGATTCGGAAAGCATATCTTATCCTTGC
TAAGCAGACTCATCCGGACACAGTTCAGAACACCATCTCGTCGTCATTTG
ACCGGATATCACACGCGTATACTGTACTTAGCGATCCCGAGCTCCGTTCC
GTCTATGATCAAACTGGTCATGAAGGGCTTGCAGCTATCAAGAGCATACA
ACAACGTGCTGAACAGATACGGGACAAGTTCTCTTCAATGTCCGGAGAGC
AGCTCGACTTCCTTTGCGACTCTGGTGAGTTGGTTGGCGGACTCTTGTCA
TCTTCTTCAGATGACGAAGCATTTGATCCATCCAGCGTATCCCATGAAGA
TGCCTGTCCACGTTCTGTCCAGGAGGCAATTTGGAACATTCAGTTCCACC
CAGATCGCAGTGTGCGATACTACGGTCTGTGGTGGATATACAAGTTCAAA
GTTACGGCTGCGGAGGCAGCTCTTGTTAACGTTTTGCAAACATCCAACGA
CCAAACGAGTCTAGGCGGATACGGAATTCGACGTCGAGCTGCCTTGGCAC
TTGGAGCTGTTGCTGCGGCGCCCACTGAATCCAACCAAGCTGCGGTAATC
GCTCTTTCCGACGCACTTCGGAGTCCCGATTATTTCTTGAGATATCGAGC
TGCCGAAGCGATGTCAAACATCGCACAACGATGTGCACGTTCGCGACAAC
AGTTTTCCTTTCCACGGAGTGCAACGTATCAGCTGAAACTGCTTCTATCC
AAGGGCCAGAAAAAGTTTGCTTTGAAAGAAGAGGCTAAGTCGGGGTTCAC
TCAACAAGAAAGTCTCTTCGACCTCGAAAATCTTGATCCCTCTTTGCGTG
AGAAGCTCGAAGCCATTTTCAGAGAAAGACGAGAAAATGAGAAGCGAAGC
AGAAGGACAACGATGACGCCACAGCTTGGTGTGGAAGCAGTGGGCTCCAG
TTCAGATGAACCTTACGAATGGCTGCTCAAAGCGGTATCAGCCGTGTGCG
CGAATCAGATATCTCATCTTGACGATCAGTTGCTCAAGATTATTGAGTCC
TACACATCCAATTCAACACCATTAGTGCGTTATGCCGCACATAAGGCACT
TTACGCCATAACCGGGGCAGAGCAGCATGCGCAACAAATTGTGCGAGCGC
TGGAGTATGGGGTGGAACATCATTATTCTCAAAGAGTTCTTATTCGAGAT
CTTGGAGACTTAGGGTACTCAAAAGGAGCAGAAGCTGTGGCTCTTTGTCC
AATGGTGGAGAACAGTTTCAAAATTCTAGCTTTGAAGAATATGCTTGCAA
AACAGGAGCACGACCCAACCACTCAAGAAGTGAGAGATGTGCTCACTCAC
ATGGACTCCCTTCTGTAG

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:59862..61379+

>Gcaud1832.t1 ID=Gcaud1832.t1|Name=Gcaud1832.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1518bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:59862..61379+ (Gracilaria caudata M_176_S67 male)
ATGGCGTCTGCTTTCATGCCGCCGATTCCAATTCCAAATCTTAAGCGTAA
GGGTTTAAAATGCGCACGCCGTCGGAGCACGCTGCAAGCGACTCTGCCCT
CAGACTCGAAGCCTTCCCTTTACTCGATTCTCGGCCTAGACAGTAACAAC
CCTTCTTCCGTTACAAGTTCTCAGATTCGGAAAGCATATCTTATCCTTGC
TAAGCAGACTCATCCGGACACAGTTCAGAACACCATCTCGTCGTCATTTG
ACCGGATATCACACGCGTATACTGTACTTAGCGATCCCGAGCTCCGTTCC
GTCTATGATCAAACTGGTCATGAAGGGCTTGCAGCTATCAAGAGCATACA
ACAACGTGCTGAACAGATACGGGACAAGTTCTCTTCAATGTCCGGAGAGC
AGCTCGACTTCCTTTGCGACTCTGGTGAGTTGGTTGGCGGACTCTTGTCA
TCTTCTTCAGATGACGAAGCATTTGATCCATCCAGCGTATCCCATGAAGA
TGCCTGTCCACGTTCTGTCCAGGAGGCAATTTGGAACATTCAGTTCCACC
CAGATCGCAGTGTGCGATACTACGGTCTGTGGTGGATATACAAGTTCAAA
GTTACGGCTGCGGAGGCAGCTCTTGTTAACGTTTTGCAAACATCCAACGA
CCAAACGAGTCTAGGCGGATACGGAATTCGACGTCGAGCTGCCTTGGCAC
TTGGAGCTGTTGCTGCGGCGCCCACTGAATCCAACCAAGCTGCGGTAATC
GCTCTTTCCGACGCACTTCGGAGTCCCGATTATTTCTTGAGATATCGAGC
TGCCGAAGCGATGTCAAACATCGCACAACGATGTGCACGTTCGCGACAAC
AGTTTTCCTTTCCACGGAGTGCAACGTATCAGCTGAAACTGCTTCTATCC
AAGGGCCAGAAAAAGTTTGCTTTGAAAGAAGAGGCTAAGTCGGGGTTCAC
TCAACAAGAAAGTCTCTTCGACCTCGAAAATCTTGATCCCTCTTTGCGTG
AGAAGCTCGAAGCCATTTTCAGAGAAAGACGAGAAAATGAGAAGCGAAGC
AGAAGGACAACGATGACGCCACAGCTTGGTGTGGAAGCAGTGGGCTCCAG
TTCAGATGAACCTTACGAATGGCTGCTCAAAGCGGTATCAGCCGTGTGCG
CGAATCAGATATCTCATCTTGACGATCAGTTGCTCAAGATTATTGAGTCC
TACACATCCAATTCAACACCATTAGTGCGTTATGCCGCACATAAGGCACT
TTACGCCATAACCGGGGCAGAGCAGCATGCGCAACAAATTGTGCGAGCGC
TGGAGTATGGGGTGGAACATCATTATTCTCAAAGAGTTCTTATTCGAGAT
CTTGGAGACTTAGGGTACTCAAAAGGAGCAGAAGCTGTGGCTCTTTGTCC
AATGGTGGAGAACAGTTTCAAAATTCTAGCTTTGAAGAATATGCTTGCAA
AACAGGAGCACGACCCAACCACTCAAGAAGTGAGAGATGTGCTCACTCAC
ATGGACTCCCTTCTGTAG