Gcaud1829.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1829.t1
Unique NameGcaud1829.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:53627..54483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704622.1
Preferred nameFTSJ2
PFAMsFtsJ
Max annot lvl2759|Eukaryota
KEGG koko:K01285,ko:K02427,ko:K06638,ko:K15508
KEGG Pathwayko04110,ko04614,ko04914,ko04974,ko05203,map04110,map04614,map04914,map04974,map05203
GOsGO:0000154,GO:0000451,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008283,GO:0008649,GO:0008650,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Evalue1.68e-42
EggNOG OGsCOG0293@1|root,KOG4589@2759|Eukaryota
EC2.1.1.166,2.1.1.168,3.4.16.2
DescriptionrRNA (uridine-2'-O-)-methyltransferase activity
COG categoryJ
BRITEko00000,ko00001,ko01000,ko01002,ko03009,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1829Gcaud1829Gracilaria caudata M_176_S67 malegeneNODE_23_length_76035_cov_4.613123 53627..54483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1829.t1Gcaud1829.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_23_length_76035_cov_4.613123 53627..54483 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1829.t1.start1Gcaud1829.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_23_length_76035_cov_4.613123 53627..53629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1829.t1.CDS1Gcaud1829.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_23_length_76035_cov_4.613123 53627..53950 +
Gcaud1829.t1.CDS2Gcaud1829.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_23_length_76035_cov_4.613123 54022..54483 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1829.t1.exon1Gcaud1829.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_23_length_76035_cov_4.613123 53627..53950 +
Gcaud1829.t1.exon2Gcaud1829.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_23_length_76035_cov_4.613123 54022..54483 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1829.t1.intron1Gcaud1829.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_23_length_76035_cov_4.613123 53951..54021 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1829.t1.stop1Gcaud1829.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_23_length_76035_cov_4.613123 54481..54483 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1829.t1 ID=Gcaud1829.t1|Name=Gcaud1829.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=262bp
MSTSAVTSCARQLCTWQARRAKDIYSHRAAVEGLRNRAAYKLIELNDRFR
FLRRDSYVVDLGSAPGGFASAMAKRIKLDDRLCVWNMRGLSEVKRSIGRR
KRGKGFGKLVCVDVEDMKEINGATFIRGSIEDGDMSKRIAHALQGNEADV
IVCDAAPSTTGDRERDHTRCIHTATAALSIADCVLTNGGTLVIKVFRGAD
EAEFVRLLEARFVRNRAVKPKASVKQSREVYYVCERFVPRELTDGPGLTM
CQMEDATSIAK*
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spliced messenger RNA

>Gcaud1829.t1 ID=Gcaud1829.t1|Name=Gcaud1829.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=786bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:53627..54483+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACCTCTGCTGTCACAAGCTGTGCGCGACAGCTTTGCACATGGCA
GGCGCGTCGTGCCAAGGACATCTACTCGCATCGCGCCGCGGTGGAGGGCC
TGCGCAATCGCGCCGCATACAAACTGATCGAACTCAATGACAGGTTCCGC
TTCCTCAGGCGCGACTCGTACGTGGTGGACTTGGGGTCCGCGCCCGGCGG
CTTTGCGAGCGCAATGGCGAAGAGAATTAAGCTGGATGACCGTCTGTGCG
TGTGGAACATGCGCGGCTTGTCCGAGGTGAAGAGAAGCATTGGCAGACGC
AAGCGAGGAAAAGGGTTCGGAAAGTTGGTGTGCGTTGACGTGGAGGACAT
GAAGGAAATCAATGGAGCGACGTTTATTCGAGGCAGCATAGAAGATGGCG
ACATGAGCAAGCGCATCGCGCACGCGCTGCAAGGGAACGAGGCGGACGTG
ATTGTATGCGACGCGGCGCCATCCACAACCGGCGACCGGGAACGGGACCA
CACGCGCTGCATCCACACGGCCACAGCGGCGCTGTCAATCGCCGATTGCG
TGCTCACAAACGGCGGAACGCTGGTGATCAAGGTGTTCCGCGGAGCGGAT
GAGGCTGAGTTCGTGCGGCTGCTGGAGGCGCGATTCGTGCGCAACAGAGC
GGTGAAGCCGAAGGCCAGCGTGAAGCAGTCGCGCGAAGTGTACTACGTCT
GCGAGCGCTTCGTGCCGCGCGAACTGACCGACGGTCCGGGGCTGACCATG
TGCCAGATGGAGGACGCCACGTCAATTGCAAAATGA
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protein sequence of Gcaud1829.t1

>Gcaud1829.t1 ID=Gcaud1829.t1|Name=Gcaud1829.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=262bp
MSTSAVTSCARQLCTWQARRAKDIYSHRAAVEGLRNRAAYKLIELNDRFR
FLRRDSYVVDLGSAPGGFASAMAKRIKLDDRLCVWNMRGLSEVKRSIGRR
KRGKGFGKLVCVDVEDMKEINGATFIRGSIEDGDMSKRIAHALQGNEADV
IVCDAAPSTTGDRERDHTRCIHTATAALSIADCVLTNGGTLVIKVFRGAD
EAEFVRLLEARFVRNRAVKPKASVKQSREVYYVCERFVPRELTDGPGLTM
CQMEDATSIAK*
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mRNA from alignment at NODE_23_length_76035_cov_4.613123:53627..54483+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1829.t1 ID=Gcaud1829.t1|Name=Gcaud1829.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=857bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:53627..54483+ (Gracilaria caudata M_176_S67 male)
ATGAGCACCTCTGCTGTCACAAGCTGTGCGCGACAGCTTTGCACATGGCA
GGCGCGTCGTGCCAAGGACATCTACTCGCATCGCGCCGCGGTGGAGGGCC
TGCGCAATCGCGCCGCATACAAACTGATCGAACTCAATGACAGGTTCCGC
TTCCTCAGGCGCGACTCGTACGTGGTGGACTTGGGGTCCGCGCCCGGCGG
CTTTGCGAGCGCAATGGCGAAGAGAATTAAGCTGGATGACCGTCTGTGCG
TGTGGAACATGCGCGGCTTGTCCGAGGTGAAGAGAAGCATTGGCAGACGC
AAGCGAGGAAAAGGGTTCGGAAAGGTACGTTGTGCGGACTGTTTTGCGAG
ACAGCGATGCGGTATAATGACTAACGACATGATGTCCATGCGCAGTTGGT
GTGCGTTGACGTGGAGGACATGAAGGAAATCAATGGAGCGACGTTTATTC
GAGGCAGCATAGAAGATGGCGACATGAGCAAGCGCATCGCGCACGCGCTG
CAAGGGAACGAGGCGGACGTGATTGTATGCGACGCGGCGCCATCCACAAC
CGGCGACCGGGAACGGGACCACACGCGCTGCATCCACACGGCCACAGCGG
CGCTGTCAATCGCCGATTGCGTGCTCACAAACGGCGGAACGCTGGTGATC
AAGGTGTTCCGCGGAGCGGATGAGGCTGAGTTCGTGCGGCTGCTGGAGGC
GCGATTCGTGCGCAACAGAGCGGTGAAGCCGAAGGCCAGCGTGAAGCAGT
CGCGCGAAGTGTACTACGTCTGCGAGCGCTTCGTGCCGCGCGAACTGACC
GACGGTCCGGGGCTGACCATGTGCCAGATGGAGGACGCCACGTCAATTGC
AAAATGA
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Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:53627..54483+

>Gcaud1829.t1 ID=Gcaud1829.t1|Name=Gcaud1829.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=786bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:53627..54483+ (Gracilaria caudata M_176_S67 male)
ATGAGCACCTCTGCTGTCACAAGCTGTGCGCGACAGCTTTGCACATGGCA
GGCGCGTCGTGCCAAGGACATCTACTCGCATCGCGCCGCGGTGGAGGGCC
TGCGCAATCGCGCCGCATACAAACTGATCGAACTCAATGACAGGTTCCGC
TTCCTCAGGCGCGACTCGTACGTGGTGGACTTGGGGTCCGCGCCCGGCGG
CTTTGCGAGCGCAATGGCGAAGAGAATTAAGCTGGATGACCGTCTGTGCG
TGTGGAACATGCGCGGCTTGTCCGAGGTGAAGAGAAGCATTGGCAGACGC
AAGCGAGGAAAAGGGTTCGGAAAGTTGGTGTGCGTTGACGTGGAGGACAT
GAAGGAAATCAATGGAGCGACGTTTATTCGAGGCAGCATAGAAGATGGCG
ACATGAGCAAGCGCATCGCGCACGCGCTGCAAGGGAACGAGGCGGACGTG
ATTGTATGCGACGCGGCGCCATCCACAACCGGCGACCGGGAACGGGACCA
CACGCGCTGCATCCACACGGCCACAGCGGCGCTGTCAATCGCCGATTGCG
TGCTCACAAACGGCGGAACGCTGGTGATCAAGGTGTTCCGCGGAGCGGAT
GAGGCTGAGTTCGTGCGGCTGCTGGAGGCGCGATTCGTGCGCAACAGAGC
GGTGAAGCCGAAGGCCAGCGTGAAGCAGTCGCGCGAAGTGTACTACGTCT
GCGAGCGCTTCGTGCCGCGCGAACTGACCGACGGTCCGGGGCTGACCATG
TGCCAGATGGAGGACGCCACGTCAATTGCAAAATGA
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