Gcaud1826.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1826.t1
Unique Name	Gcaud1826.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	601

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:43742..45544 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1136417.AZWE01000056_gene320
Preferred name	glsA
PFAMs	Glutaminase
Max annot lvl	201174\|Actinobacteria
KEGG rclass	RC00010,RC02798
KEGG ko	ko:K01425
KEGG Reaction	R00256,R01579
KEGG Pathway	ko00220,ko00250,ko00471,ko01100,ko04724,ko04727,ko04964,ko05206,ko05230,map00220,map00250,map00471,map01100,map04724,map04727,map04964,map05206,map05230
GOs	GO:0003674,GO:0003824,GO:0004359,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006543,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009987,GO:0016053,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607
Evalue	2.43e-88
EggNOG OGs	COG0666@1\|root,COG2066@1\|root,COG0666@2\|Bacteria,COG2066@2\|Bacteria,2GKAV@201174\|Actinobacteria,4DDJY@85008\|Micromonosporales
EC	3.5.1.2
Description	Glutaminase
COG category	E
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1826	Gcaud1826	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 43742..45544 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1826.t1.stop1	Gcaud1826.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 43742..43744 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1826.t1.CDS1	Gcaud1826.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 43742..45544 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1826.t1.exon1	Gcaud1826.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 43742..45544 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1826.t1.start1	Gcaud1826.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 45542..45544 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1826.t1	Gcaud1826.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 43742..45544 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:43742..45544-
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:43742..45544-

mRNA sequence

>Gcaud1826.t1 ID=Gcaud1826.t1|Name=Gcaud1826.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=601bp
MSLSSILEELKLECTDEEVLEGLGGSPSGITIESVKRAIIQAGIVVEGGR
PDPRVREVLRTLERFESDRLLTAEEFITHASGNLTLLHRIATREMAIRDF
TEFKGHLDDLKATIEPVETGENADYIPILKRASPDKFGVAFCSVDGQFYE
SGDTRESFSVQSTCKPIMFALALQKLGRKKILEWCGIEPSGRPFNDLTLM
SDDRPFNPMINSGALMISGLLAAAHLDIVEGDGPYGEEETYGQRLCEKLL
LPTWGRLAATGAFEQLEVGFSPETFLSERETADRNIAITHNMKATSKGLP
PNVDTQYIIDFYLRSCSITANAAAMAVVAATLANGGRNPIIGDQVFRGDV
VKRVLSVLSLCGFYDNSGEFFFDTGIPSKSGVSGIVMMVLPNVGGFAIFS
PRLDKYGNSVRGSLFAKELVRLFTFHAFDNLSALSTGCRLDPRFSCDASR
QKEISRLRWAVKAKGKQAMKFDTLLVNVCLRIALTNGVLGSKERETIRLS
YKSVMHLDLNRARIDRLSRDIHVSPETGLDSLFNYVRSEALALTDTEKEL
ILAAAVRVATADGTVCSSEEILLQVLAKALHIQKCVLDFRLRAWRREFNV
*

spliced messenger RNA

>Gcaud1826.t1 ID=Gcaud1826.t1|Name=Gcaud1826.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1803bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:43742..45544- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCTATCAAGTATACTTGAGGAATTAAAGCTTGAGTGTACTGATGA
GGAGGTACTCGAAGGTCTTGGTGGATCACCTTCAGGCATAACTATTGAGA
GCGTGAAGAGGGCTATTATACAAGCAGGGATTGTTGTCGAAGGGGGTAGG
CCGGATCCAAGAGTGAGAGAAGTGTTGAGAACCTTAGAGCGATTTGAATC
TGATCGACTCCTCACCGCCGAAGAATTTATTACTCATGCTTCCGGTAATC
TCACACTTCTGCATCGCATCGCCACGAGAGAAATGGCCATAAGGGATTTC
ACAGAGTTTAAAGGACACCTCGATGACTTGAAGGCAACGATTGAACCCGT
AGAGACCGGGGAGAACGCAGATTACATTCCTATCTTAAAACGTGCTTCAC
CTGATAAATTTGGCGTCGCCTTCTGTTCAGTTGATGGGCAGTTTTATGAG
TCTGGGGATACAAGAGAGTCATTTAGTGTTCAAAGCACTTGCAAACCCAT
CATGTTCGCCCTCGCCTTACAGAAGCTAGGACGGAAAAAGATACTCGAAT
GGTGTGGCATTGAACCAAGTGGGCGACCCTTTAATGACTTGACTCTCATG
AGTGACGATCGACCATTTAATCCCATGATCAACAGCGGTGCCCTTATGAT
ATCCGGACTTCTGGCAGCTGCTCATCTCGACATTGTCGAAGGGGATGGAC
CCTATGGAGAAGAAGAAACATATGGTCAGAGACTATGTGAAAAGCTCCTA
TTACCAACATGGGGTCGTCTTGCCGCAACTGGTGCCTTCGAGCAACTGGA
AGTCGGATTTTCGCCGGAGACCTTTCTGTCTGAGCGCGAAACAGCCGATA
GGAATATTGCAATCACACATAACATGAAAGCCACCAGCAAAGGCTTACCA
CCAAACGTAGACACTCAGTATATAATTGACTTTTATCTTCGTTCATGCTC
GATCACCGCCAACGCTGCGGCTATGGCAGTTGTCGCAGCTACTCTGGCGA
ACGGCGGGAGAAATCCGATCATCGGTGACCAAGTCTTTAGAGGGGACGTA
GTGAAGAGAGTACTTTCCGTGTTAAGTTTGTGCGGGTTCTACGATAATTC
TGGAGAATTCTTCTTCGACACGGGCATTCCATCGAAGTCGGGCGTGAGCG
GTATCGTTATGATGGTCTTGCCCAACGTTGGTGGGTTTGCAATATTCTCT
CCTCGCCTAGACAAATACGGAAACTCAGTCCGTGGATCGTTATTTGCTAA
AGAACTGGTAAGGCTATTCACGTTCCATGCCTTCGACAATCTGTCAGCAC
TCTCAACAGGGTGCAGACTCGATCCCCGTTTTAGTTGTGATGCATCTCGT
CAAAAAGAAATATCCCGTTTGCGTTGGGCAGTTAAAGCAAAAGGAAAACA
GGCGATGAAGTTTGACACGCTGCTTGTCAACGTTTGTCTTCGAATCGCTT
TAACAAACGGAGTACTTGGATCCAAGGAACGAGAAACAATCAGGCTTTCG
TACAAATCTGTGATGCATCTCGACTTGAATCGGGCACGAATTGATAGATT
AAGTAGGGATATTCATGTGTCGCCTGAAACGGGGCTAGATTCGCTCTTCA
ATTATGTTCGTTCGGAAGCATTAGCCCTTACAGATACGGAAAAGGAGCTT
ATTCTTGCCGCTGCAGTTAGAGTGGCAACGGCTGATGGGACGGTCTGCAG
CTCCGAAGAAATTCTCCTTCAAGTTCTAGCCAAAGCACTGCACATCCAAA
AATGTGTGCTGGATTTCCGTCTCAGGGCCTGGAGGAGGGAATTCAACGTT
TAA

protein sequence of Gcaud1826.t1

>Gcaud1826.t1 ID=Gcaud1826.t1|Name=Gcaud1826.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=601bp
MSLSSILEELKLECTDEEVLEGLGGSPSGITIESVKRAIIQAGIVVEGGR
PDPRVREVLRTLERFESDRLLTAEEFITHASGNLTLLHRIATREMAIRDF
TEFKGHLDDLKATIEPVETGENADYIPILKRASPDKFGVAFCSVDGQFYE
SGDTRESFSVQSTCKPIMFALALQKLGRKKILEWCGIEPSGRPFNDLTLM
SDDRPFNPMINSGALMISGLLAAAHLDIVEGDGPYGEEETYGQRLCEKLL
LPTWGRLAATGAFEQLEVGFSPETFLSERETADRNIAITHNMKATSKGLP
PNVDTQYIIDFYLRSCSITANAAAMAVVAATLANGGRNPIIGDQVFRGDV
VKRVLSVLSLCGFYDNSGEFFFDTGIPSKSGVSGIVMMVLPNVGGFAIFS
PRLDKYGNSVRGSLFAKELVRLFTFHAFDNLSALSTGCRLDPRFSCDASR
QKEISRLRWAVKAKGKQAMKFDTLLVNVCLRIALTNGVLGSKERETIRLS
YKSVMHLDLNRARIDRLSRDIHVSPETGLDSLFNYVRSEALALTDTEKEL
ILAAAVRVATADGTVCSSEEILLQVLAKALHIQKCVLDFRLRAWRREFNV
*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:43742..45544-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1826.t1 ID=Gcaud1826.t1|Name=Gcaud1826.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1803bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:43742..45544- (Gracilaria caudata M_176_S67 male)
ATGAGTCTATCAAGTATACTTGAGGAATTAAAGCTTGAGTGTACTGATGA
GGAGGTACTCGAAGGTCTTGGTGGATCACCTTCAGGCATAACTATTGAGA
GCGTGAAGAGGGCTATTATACAAGCAGGGATTGTTGTCGAAGGGGGTAGG
CCGGATCCAAGAGTGAGAGAAGTGTTGAGAACCTTAGAGCGATTTGAATC
TGATCGACTCCTCACCGCCGAAGAATTTATTACTCATGCTTCCGGTAATC
TCACACTTCTGCATCGCATCGCCACGAGAGAAATGGCCATAAGGGATTTC
ACAGAGTTTAAAGGACACCTCGATGACTTGAAGGCAACGATTGAACCCGT
AGAGACCGGGGAGAACGCAGATTACATTCCTATCTTAAAACGTGCTTCAC
CTGATAAATTTGGCGTCGCCTTCTGTTCAGTTGATGGGCAGTTTTATGAG
TCTGGGGATACAAGAGAGTCATTTAGTGTTCAAAGCACTTGCAAACCCAT
CATGTTCGCCCTCGCCTTACAGAAGCTAGGACGGAAAAAGATACTCGAAT
GGTGTGGCATTGAACCAAGTGGGCGACCCTTTAATGACTTGACTCTCATG
AGTGACGATCGACCATTTAATCCCATGATCAACAGCGGTGCCCTTATGAT
ATCCGGACTTCTGGCAGCTGCTCATCTCGACATTGTCGAAGGGGATGGAC
CCTATGGAGAAGAAGAAACATATGGTCAGAGACTATGTGAAAAGCTCCTA
TTACCAACATGGGGTCGTCTTGCCGCAACTGGTGCCTTCGAGCAACTGGA
AGTCGGATTTTCGCCGGAGACCTTTCTGTCTGAGCGCGAAACAGCCGATA
GGAATATTGCAATCACACATAACATGAAAGCCACCAGCAAAGGCTTACCA
CCAAACGTAGACACTCAGTATATAATTGACTTTTATCTTCGTTCATGCTC
GATCACCGCCAACGCTGCGGCTATGGCAGTTGTCGCAGCTACTCTGGCGA
ACGGCGGGAGAAATCCGATCATCGGTGACCAAGTCTTTAGAGGGGACGTA
GTGAAGAGAGTACTTTCCGTGTTAAGTTTGTGCGGGTTCTACGATAATTC
TGGAGAATTCTTCTTCGACACGGGCATTCCATCGAAGTCGGGCGTGAGCG
GTATCGTTATGATGGTCTTGCCCAACGTTGGTGGGTTTGCAATATTCTCT
CCTCGCCTAGACAAATACGGAAACTCAGTCCGTGGATCGTTATTTGCTAA
AGAACTGGTAAGGCTATTCACGTTCCATGCCTTCGACAATCTGTCAGCAC
TCTCAACAGGGTGCAGACTCGATCCCCGTTTTAGTTGTGATGCATCTCGT
CAAAAAGAAATATCCCGTTTGCGTTGGGCAGTTAAAGCAAAAGGAAAACA
GGCGATGAAGTTTGACACGCTGCTTGTCAACGTTTGTCTTCGAATCGCTT
TAACAAACGGAGTACTTGGATCCAAGGAACGAGAAACAATCAGGCTTTCG
TACAAATCTGTGATGCATCTCGACTTGAATCGGGCACGAATTGATAGATT
AAGTAGGGATATTCATGTGTCGCCTGAAACGGGGCTAGATTCGCTCTTCA
ATTATGTTCGTTCGGAAGCATTAGCCCTTACAGATACGGAAAAGGAGCTT
ATTCTTGCCGCTGCAGTTAGAGTGGCAACGGCTGATGGGACGGTCTGCAG
CTCCGAAGAAATTCTCCTTCAAGTTCTAGCCAAAGCACTGCACATCCAAA
AATGTGTGCTGGATTTCCGTCTCAGGGCCTGGAGGAGGGAATTCAACGTT
TAA

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:43742..45544-

>Gcaud1826.t1 ID=Gcaud1826.t1|Name=Gcaud1826.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1803bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:43742..45544- (Gracilaria caudata M_176_S67 male)
ATGAGTCTATCAAGTATACTTGAGGAATTAAAGCTTGAGTGTACTGATGA
GGAGGTACTCGAAGGTCTTGGTGGATCACCTTCAGGCATAACTATTGAGA
GCGTGAAGAGGGCTATTATACAAGCAGGGATTGTTGTCGAAGGGGGTAGG
CCGGATCCAAGAGTGAGAGAAGTGTTGAGAACCTTAGAGCGATTTGAATC
TGATCGACTCCTCACCGCCGAAGAATTTATTACTCATGCTTCCGGTAATC
TCACACTTCTGCATCGCATCGCCACGAGAGAAATGGCCATAAGGGATTTC
ACAGAGTTTAAAGGACACCTCGATGACTTGAAGGCAACGATTGAACCCGT
AGAGACCGGGGAGAACGCAGATTACATTCCTATCTTAAAACGTGCTTCAC
CTGATAAATTTGGCGTCGCCTTCTGTTCAGTTGATGGGCAGTTTTATGAG
TCTGGGGATACAAGAGAGTCATTTAGTGTTCAAAGCACTTGCAAACCCAT
CATGTTCGCCCTCGCCTTACAGAAGCTAGGACGGAAAAAGATACTCGAAT
GGTGTGGCATTGAACCAAGTGGGCGACCCTTTAATGACTTGACTCTCATG
AGTGACGATCGACCATTTAATCCCATGATCAACAGCGGTGCCCTTATGAT
ATCCGGACTTCTGGCAGCTGCTCATCTCGACATTGTCGAAGGGGATGGAC
CCTATGGAGAAGAAGAAACATATGGTCAGAGACTATGTGAAAAGCTCCTA
TTACCAACATGGGGTCGTCTTGCCGCAACTGGTGCCTTCGAGCAACTGGA
AGTCGGATTTTCGCCGGAGACCTTTCTGTCTGAGCGCGAAACAGCCGATA
GGAATATTGCAATCACACATAACATGAAAGCCACCAGCAAAGGCTTACCA
CCAAACGTAGACACTCAGTATATAATTGACTTTTATCTTCGTTCATGCTC
GATCACCGCCAACGCTGCGGCTATGGCAGTTGTCGCAGCTACTCTGGCGA
ACGGCGGGAGAAATCCGATCATCGGTGACCAAGTCTTTAGAGGGGACGTA
GTGAAGAGAGTACTTTCCGTGTTAAGTTTGTGCGGGTTCTACGATAATTC
TGGAGAATTCTTCTTCGACACGGGCATTCCATCGAAGTCGGGCGTGAGCG
GTATCGTTATGATGGTCTTGCCCAACGTTGGTGGGTTTGCAATATTCTCT
CCTCGCCTAGACAAATACGGAAACTCAGTCCGTGGATCGTTATTTGCTAA
AGAACTGGTAAGGCTATTCACGTTCCATGCCTTCGACAATCTGTCAGCAC
TCTCAACAGGGTGCAGACTCGATCCCCGTTTTAGTTGTGATGCATCTCGT
CAAAAAGAAATATCCCGTTTGCGTTGGGCAGTTAAAGCAAAAGGAAAACA
GGCGATGAAGTTTGACACGCTGCTTGTCAACGTTTGTCTTCGAATCGCTT
TAACAAACGGAGTACTTGGATCCAAGGAACGAGAAACAATCAGGCTTTCG
TACAAATCTGTGATGCATCTCGACTTGAATCGGGCACGAATTGATAGATT
AAGTAGGGATATTCATGTGTCGCCTGAAACGGGGCTAGATTCGCTCTTCA
ATTATGTTCGTTCGGAAGCATTAGCCCTTACAGATACGGAAAAGGAGCTT
ATTCTTGCCGCTGCAGTTAGAGTGGCAACGGCTGATGGGACGGTCTGCAG
CTCCGAAGAAATTCTCCTTCAAGTTCTAGCCAAAGCACTGCACATCCAAA
AATGTGTGCTGGATTTCCGTCTCAGGGCCTGGAGGAGGGAATTCAACGTT
TAA