Gcaud1824.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1824.t1
Unique Name	Gcaud1824.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	542

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:38653..40481 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	582515.KR51_00005020
PFAMs	HEAT_2,HEAT_PBS
Max annot lvl	1117\|Cyanobacteria
Evalue	2.37e-10
EggNOG OGs	COG1413@1\|root,COG1413@2\|Bacteria,1G0N6@1117\|Cyanobacteria
Description	PBS lyase HEAT-like repeat
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1824	Gcaud1824	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 38653..40481 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1824.t1	Gcaud1824.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 38653..40481 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1824.t1.stop1	Gcaud1824.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 38653..38655 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1824.t1.CDS1	Gcaud1824.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 38653..40238 -
Gcaud1824.t1.CDS2	Gcaud1824.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 40442..40481 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1824.t1.exon1	Gcaud1824.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 38653..40238 -
Gcaud1824.t1.exon2	Gcaud1824.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 40442..40481 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1824.t1.intron1	Gcaud1824.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_23_length_76035_cov_4.613123 40239..40441 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1824.t1.start1	Gcaud1824.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 40479..40481 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:38653..40481-
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:38653..40481-

mRNA sequence

>Gcaud1824.t1 ID=Gcaud1824.t1|Name=Gcaud1824.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=542bp
MIPVGKLQFLRSSGKADQQKGLLLVRQLPSRIALELLQLSVETSDNEFIR
STAAISIGQLSFEDDNIAMEAVRLMAALLATDEDYSVRAAAGAAMGYATN
ISPAAKSILFDALTRALIEDAEWQVQFSCLASLGSQHDKRAVPVLHKWLS
SDNDLLVQAAVGSLGDIGDSASIPELLKLLGSGDMMTRQRLAQALGYISE
AKGEPSVIDALRTLSKDQSFAVREAAEEALKVFGCGNPVKEDIRTDEELI
EAEISNLIQGDESGSAVESASDALRRRLERSFDKEYIHPSAFKNVPKPEA
SSDMHAFRQLVDDLKAGSPLAQVMAAIQLRKFDGKLASEAALSSNSFDPK
VSTERLRAVCVGLLAKGGELEQVIRILKTDPDQNVRSACCDALLDLGGGL
PAVEACIDTFQNDSHWLVRVSAAIALGTIGKENRQVEEILIQSLYPGGVK
DMNPPQDFVIHRHVVTALGFLGSRKALTRFEELTRSHDTDDSVRYRIAAA
LRGIHCEESAGLLRLLIEDENESVAEMAQGSLDALSQLGFS*

spliced messenger RNA

>Gcaud1824.t1 ID=Gcaud1824.t1|Name=Gcaud1824.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1626bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:38653..40481- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACCTGTTGGTAAATTGCAATTCCTTCGCAGCTCAGGGAAAGCAGA
CCAGCAAAAAGGACTTCTTCTAGTCCGCCAACTGCCATCGAGAATCGCAC
TTGAGCTGTTACAACTCAGCGTGGAAACGTCAGACAACGAATTTATTCGT
TCAACTGCTGCCATATCCATTGGTCAGCTCTCGTTTGAGGATGATAATAT
AGCCATGGAAGCTGTACGCCTTATGGCTGCTCTTTTGGCAACAGACGAGG
ACTACTCTGTGCGTGCTGCCGCAGGTGCTGCCATGGGATACGCGACAAAT
ATCTCTCCAGCAGCGAAATCCATTTTGTTTGACGCTCTTACCCGCGCGCT
GATTGAGGATGCAGAATGGCAAGTTCAATTCAGCTGCCTCGCCTCTTTAG
GAAGTCAACATGACAAAAGAGCCGTGCCTGTTTTGCACAAATGGCTTAGC
TCTGATAATGATCTGCTTGTACAAGCAGCAGTAGGATCGTTAGGAGACAT
TGGAGACTCTGCTTCAATCCCAGAGCTTCTTAAGCTTTTGGGAAGTGGCG
ATATGATGACCAGACAACGACTGGCGCAGGCTCTCGGGTACATTTCGGAA
GCAAAAGGCGAGCCCTCAGTGATTGACGCTTTGCGAACCTTGAGCAAAGA
TCAGTCGTTTGCGGTGCGAGAAGCTGCTGAAGAGGCCTTGAAGGTATTCG
GATGCGGGAATCCAGTGAAGGAAGATATAAGAACTGATGAGGAGCTAATT
GAAGCAGAGATCAGCAATTTGATCCAGGGTGATGAGAGTGGTTCAGCCGT
TGAGTCCGCTTCTGATGCTCTGCGCAGACGTCTGGAGCGCTCCTTTGACA
AGGAATACATTCATCCGTCTGCGTTCAAGAATGTCCCTAAGCCAGAAGCC
TCCAGTGATATGCATGCGTTTAGGCAGTTAGTGGATGATCTAAAGGCTGG
AAGCCCTCTTGCACAAGTAATGGCAGCCATTCAACTCCGGAAATTTGATG
GGAAACTGGCTTCTGAAGCTGCTCTATCGTCCAATAGTTTCGACCCAAAA
GTATCTACTGAGAGGTTGCGAGCAGTATGCGTTGGCTTGCTTGCGAAAGG
CGGCGAACTTGAACAAGTGATACGAATACTGAAGACTGACCCAGATCAAA
ATGTCAGAAGTGCATGCTGCGATGCCCTCCTGGACCTTGGCGGAGGCCTT
CCCGCTGTAGAGGCATGTATTGACACATTTCAGAACGACTCTCACTGGTT
GGTGAGAGTCAGCGCGGCGATTGCACTCGGTACCATCGGGAAAGAAAATA
GACAGGTCGAAGAAATCCTTATACAAAGCCTCTATCCTGGCGGGGTGAAA
GATATGAATCCTCCCCAGGATTTTGTAATTCACCGCCATGTAGTAACAGC
TCTTGGGTTTCTTGGATCACGGAAAGCTTTAACGCGCTTTGAAGAACTTA
CACGTTCTCACGATACTGATGACTCTGTTCGATATCGTATTGCCGCCGCA
CTCCGAGGCATACATTGTGAAGAAAGCGCTGGGCTTCTTCGCTTGCTCAT
CGAAGATGAGAATGAATCGGTAGCAGAAATGGCACAGGGCAGCTTGGATG
CGCTTTCTCAGTTGGGGTTCAGCTAG

protein sequence of Gcaud1824.t1

>Gcaud1824.t1 ID=Gcaud1824.t1|Name=Gcaud1824.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=542bp
MIPVGKLQFLRSSGKADQQKGLLLVRQLPSRIALELLQLSVETSDNEFIR
STAAISIGQLSFEDDNIAMEAVRLMAALLATDEDYSVRAAAGAAMGYATN
ISPAAKSILFDALTRALIEDAEWQVQFSCLASLGSQHDKRAVPVLHKWLS
SDNDLLVQAAVGSLGDIGDSASIPELLKLLGSGDMMTRQRLAQALGYISE
AKGEPSVIDALRTLSKDQSFAVREAAEEALKVFGCGNPVKEDIRTDEELI
EAEISNLIQGDESGSAVESASDALRRRLERSFDKEYIHPSAFKNVPKPEA
SSDMHAFRQLVDDLKAGSPLAQVMAAIQLRKFDGKLASEAALSSNSFDPK
VSTERLRAVCVGLLAKGGELEQVIRILKTDPDQNVRSACCDALLDLGGGL
PAVEACIDTFQNDSHWLVRVSAAIALGTIGKENRQVEEILIQSLYPGGVK
DMNPPQDFVIHRHVVTALGFLGSRKALTRFEELTRSHDTDDSVRYRIAAA
LRGIHCEESAGLLRLLIEDENESVAEMAQGSLDALSQLGFS*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:38653..40481-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1824.t1 ID=Gcaud1824.t1|Name=Gcaud1824.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1829bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:38653..40481- (Gracilaria caudata M_176_S67 male)
ATGATACCTGTTGGTAAATTGCAATTCCTTCGCAGCTCAGGTAAGTTCTC
GAACTCGAAGCATTCAATTTTGTTTCTCATGACACAATGATTGCGTTTGC
ATCGCCGATTCGATGGGGTTTGTCTAAGGCACAAAGGTCATGGGTTTGCT
CACGTCGCCCAAAACGTTCATATCCACGAAGCTGCGCCGAGCTCCCAGAA
ACTCCTCGTCCCGCTGACGTTCGAGCTCTAATCACCTCGAAAGGGAAAGC
AGACCAGCAAAAAGGACTTCTTCTAGTCCGCCAACTGCCATCGAGAATCG
CACTTGAGCTGTTACAACTCAGCGTGGAAACGTCAGACAACGAATTTATT
CGTTCAACTGCTGCCATATCCATTGGTCAGCTCTCGTTTGAGGATGATAA
TATAGCCATGGAAGCTGTACGCCTTATGGCTGCTCTTTTGGCAACAGACG
AGGACTACTCTGTGCGTGCTGCCGCAGGTGCTGCCATGGGATACGCGACA
AATATCTCTCCAGCAGCGAAATCCATTTTGTTTGACGCTCTTACCCGCGC
GCTGATTGAGGATGCAGAATGGCAAGTTCAATTCAGCTGCCTCGCCTCTT
TAGGAAGTCAACATGACAAAAGAGCCGTGCCTGTTTTGCACAAATGGCTT
AGCTCTGATAATGATCTGCTTGTACAAGCAGCAGTAGGATCGTTAGGAGA
CATTGGAGACTCTGCTTCAATCCCAGAGCTTCTTAAGCTTTTGGGAAGTG
GCGATATGATGACCAGACAACGACTGGCGCAGGCTCTCGGGTACATTTCG
GAAGCAAAAGGCGAGCCCTCAGTGATTGACGCTTTGCGAACCTTGAGCAA
AGATCAGTCGTTTGCGGTGCGAGAAGCTGCTGAAGAGGCCTTGAAGGTAT
TCGGATGCGGGAATCCAGTGAAGGAAGATATAAGAACTGATGAGGAGCTA
ATTGAAGCAGAGATCAGCAATTTGATCCAGGGTGATGAGAGTGGTTCAGC
CGTTGAGTCCGCTTCTGATGCTCTGCGCAGACGTCTGGAGCGCTCCTTTG
ACAAGGAATACATTCATCCGTCTGCGTTCAAGAATGTCCCTAAGCCAGAA
GCCTCCAGTGATATGCATGCGTTTAGGCAGTTAGTGGATGATCTAAAGGC
TGGAAGCCCTCTTGCACAAGTAATGGCAGCCATTCAACTCCGGAAATTTG
ATGGGAAACTGGCTTCTGAAGCTGCTCTATCGTCCAATAGTTTCGACCCA
AAAGTATCTACTGAGAGGTTGCGAGCAGTATGCGTTGGCTTGCTTGCGAA
AGGCGGCGAACTTGAACAAGTGATACGAATACTGAAGACTGACCCAGATC
AAAATGTCAGAAGTGCATGCTGCGATGCCCTCCTGGACCTTGGCGGAGGC
CTTCCCGCTGTAGAGGCATGTATTGACACATTTCAGAACGACTCTCACTG
GTTGGTGAGAGTCAGCGCGGCGATTGCACTCGGTACCATCGGGAAAGAAA
ATAGACAGGTCGAAGAAATCCTTATACAAAGCCTCTATCCTGGCGGGGTG
AAAGATATGAATCCTCCCCAGGATTTTGTAATTCACCGCCATGTAGTAAC
AGCTCTTGGGTTTCTTGGATCACGGAAAGCTTTAACGCGCTTTGAAGAAC
TTACACGTTCTCACGATACTGATGACTCTGTTCGATATCGTATTGCCGCC
GCACTCCGAGGCATACATTGTGAAGAAAGCGCTGGGCTTCTTCGCTTGCT
CATCGAAGATGAGAATGAATCGGTAGCAGAAATGGCACAGGGCAGCTTGG
ATGCGCTTTCTCAGTTGGGGTTCAGCTAG

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:38653..40481-

>Gcaud1824.t1 ID=Gcaud1824.t1|Name=Gcaud1824.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1626bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:38653..40481- (Gracilaria caudata M_176_S67 male)
ATGATACCTGTTGGTAAATTGCAATTCCTTCGCAGCTCAGGGAAAGCAGA
CCAGCAAAAAGGACTTCTTCTAGTCCGCCAACTGCCATCGAGAATCGCAC
TTGAGCTGTTACAACTCAGCGTGGAAACGTCAGACAACGAATTTATTCGT
TCAACTGCTGCCATATCCATTGGTCAGCTCTCGTTTGAGGATGATAATAT
AGCCATGGAAGCTGTACGCCTTATGGCTGCTCTTTTGGCAACAGACGAGG
ACTACTCTGTGCGTGCTGCCGCAGGTGCTGCCATGGGATACGCGACAAAT
ATCTCTCCAGCAGCGAAATCCATTTTGTTTGACGCTCTTACCCGCGCGCT
GATTGAGGATGCAGAATGGCAAGTTCAATTCAGCTGCCTCGCCTCTTTAG
GAAGTCAACATGACAAAAGAGCCGTGCCTGTTTTGCACAAATGGCTTAGC
TCTGATAATGATCTGCTTGTACAAGCAGCAGTAGGATCGTTAGGAGACAT
TGGAGACTCTGCTTCAATCCCAGAGCTTCTTAAGCTTTTGGGAAGTGGCG
ATATGATGACCAGACAACGACTGGCGCAGGCTCTCGGGTACATTTCGGAA
GCAAAAGGCGAGCCCTCAGTGATTGACGCTTTGCGAACCTTGAGCAAAGA
TCAGTCGTTTGCGGTGCGAGAAGCTGCTGAAGAGGCCTTGAAGGTATTCG
GATGCGGGAATCCAGTGAAGGAAGATATAAGAACTGATGAGGAGCTAATT
GAAGCAGAGATCAGCAATTTGATCCAGGGTGATGAGAGTGGTTCAGCCGT
TGAGTCCGCTTCTGATGCTCTGCGCAGACGTCTGGAGCGCTCCTTTGACA
AGGAATACATTCATCCGTCTGCGTTCAAGAATGTCCCTAAGCCAGAAGCC
TCCAGTGATATGCATGCGTTTAGGCAGTTAGTGGATGATCTAAAGGCTGG
AAGCCCTCTTGCACAAGTAATGGCAGCCATTCAACTCCGGAAATTTGATG
GGAAACTGGCTTCTGAAGCTGCTCTATCGTCCAATAGTTTCGACCCAAAA
GTATCTACTGAGAGGTTGCGAGCAGTATGCGTTGGCTTGCTTGCGAAAGG
CGGCGAACTTGAACAAGTGATACGAATACTGAAGACTGACCCAGATCAAA
ATGTCAGAAGTGCATGCTGCGATGCCCTCCTGGACCTTGGCGGAGGCCTT
CCCGCTGTAGAGGCATGTATTGACACATTTCAGAACGACTCTCACTGGTT
GGTGAGAGTCAGCGCGGCGATTGCACTCGGTACCATCGGGAAAGAAAATA
GACAGGTCGAAGAAATCCTTATACAAAGCCTCTATCCTGGCGGGGTGAAA
GATATGAATCCTCCCCAGGATTTTGTAATTCACCGCCATGTAGTAACAGC
TCTTGGGTTTCTTGGATCACGGAAAGCTTTAACGCGCTTTGAAGAACTTA
CACGTTCTCACGATACTGATGACTCTGTTCGATATCGTATTGCCGCCGCA
CTCCGAGGCATACATTGTGAAGAAAGCGCTGGGCTTCTTCGCTTGCTCAT
CGAAGATGAGAATGAATCGGTAGCAGAAATGGCACAGGGCAGCTTGGATG
CGCTTTCTCAGTTGGGGTTCAGCTAG