Gcaud1823.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1823.t1
Unique Name	Gcaud1823.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	220

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:37883..38542 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6500.XP_005105783.1
Preferred name	COQ7
PFAMs	COQ7
Max annot lvl	33208\|Metazoa
KEGG rclass	RC01254
KEGG ko	ko:K06134
KEGG Reaction	R04984,R08775
KEGG Pathway	ko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG Module	M00128
GOs	GO:0000003,GO:0000122,GO:0001067,GO:0001306,GO:0001701,GO:0001838,GO:0001841,GO:0001932,GO:0001933,GO:0001934,GO:0002009,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006355,GO:0006357,GO:0006725,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007275,GO:0007399,GO:0007568,GO:0007571,GO:0007610,GO:0008150,GO:0008152,GO:0008340,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010259,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015980,GO:0016043,GO:0016310,GO:0016331,GO:0017144,GO:0019219,GO:0019220,GO:0019222,GO:0019637,GO:0019693,GO:0021915,GO:0022008,GO:0022900,GO:0022904,GO:0030154,GO:0030534,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033554,GO:0034599,GO:0034641,GO:0035148,GO:0035239,GO:0035295,GO:0040008,GO:0040009,GO:0040010,GO:0042180,GO:0042181,GO:0042221,GO:0042325,GO:0042326,GO:0042327,GO:0042493,GO:0042773,GO:0042775,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0045892,GO:0045893,GO:0045927,GO:0045934,GO:0045935,GO:0045936,GO:0045937,GO:0045944,GO:0046034,GO:0046483,GO:0048518,GO:0048519,GO:0048520,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051186,GO:0051188,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0055086,GO:0055114,GO:0060255,GO:0060429,GO:0060562,GO:0061062,GO:0061063,GO:0065007,GO:0070584,GO:0070887,GO:0071704,GO:0071840,GO:0072175,GO:0072521,GO:0080090,GO:0097159,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1901661,GO:1901663,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904806,GO:1904808,GO:2000026,GO:2000112,GO:2000113,GO:2000377,GO:2001141
Evalue	3.82e-70
EggNOG OGs	COG2941@1\|root,KOG4061@2759\|Eukaryota,38H5U@33154\|Opisthokonta,3BCX2@33208\|Metazoa,3CZ63@33213\|Bilateria
Description	ubiquinone biosynthetic process
COG category	KLT
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1823	Gcaud1823	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 37883..38542 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1823.t1.start1	Gcaud1823.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 37883..37885 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1823.t1.CDS1	Gcaud1823.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 37883..38542 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1823.t1.exon1	Gcaud1823.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 37883..38542 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1823.t1.stop1	Gcaud1823.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 38540..38542 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1823.t1	Gcaud1823.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 37883..38542 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:37883..38542+
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:37883..38542+

mRNA sequence

>Gcaud1823.t1 ID=Gcaud1823.t1|Name=Gcaud1823.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=220bp
MFLAVSRRARKVQSLSSLRLYCSSAALDEDKSQRSRAQFRSPFLTDPRKK
KIIDRMLRVDHAGEIGARQIYAGQLAVFRNTPVGKVIREMAEQEQKHLDA
FDKLIKNRRVRPTAMLPIWNVAGYALGLGTALLGKEAAMACTVAVEEVIA
EHYNDQVRALMTWEDEGELRNLFREFRDDELEHKDTGIQYDAEKAPFYRA
LSDVIQAGCRAAITITERV*

spliced messenger RNA

>Gcaud1823.t1 ID=Gcaud1823.t1|Name=Gcaud1823.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:37883..38542+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTTGGCCGTATCCCGCAGAGCAAGGAAAGTACAAAGCCTGTCTTC
TCTTCGGCTTTACTGCTCTTCAGCTGCTCTTGATGAGGACAAATCTCAGC
GGTCGAGGGCACAATTTCGATCGCCATTTCTGACTGATCCCAGAAAGAAG
AAAATCATAGACCGCATGCTTCGGGTTGATCACGCTGGCGAAATTGGTGC
GCGGCAGATTTACGCTGGGCAGTTGGCAGTGTTTCGAAACACACCAGTTG
GTAAGGTAATTAGGGAAATGGCTGAACAAGAGCAGAAACATCTGGACGCA
TTCGATAAGCTCATTAAGAATCGACGCGTTCGTCCCACTGCAATGCTACC
TATCTGGAATGTTGCGGGCTATGCATTGGGTCTTGGTACTGCTCTGCTTG
GCAAAGAAGCTGCCATGGCATGCACTGTAGCTGTGGAAGAGGTGATCGCG
GAGCATTACAACGACCAAGTTAGAGCACTAATGACATGGGAGGACGAAGG
AGAACTTCGTAATCTGTTCCGAGAATTCCGAGATGATGAACTCGAACACA
AAGACACTGGAATCCAGTATGACGCTGAGAAGGCTCCATTCTACCGAGCA
CTAAGCGACGTTATCCAAGCAGGATGTCGTGCAGCCATAACTATCACAGA
GCGAGTTTAA

protein sequence of Gcaud1823.t1

>Gcaud1823.t1 ID=Gcaud1823.t1|Name=Gcaud1823.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=220bp
MFLAVSRRARKVQSLSSLRLYCSSAALDEDKSQRSRAQFRSPFLTDPRKK
KIIDRMLRVDHAGEIGARQIYAGQLAVFRNTPVGKVIREMAEQEQKHLDA
FDKLIKNRRVRPTAMLPIWNVAGYALGLGTALLGKEAAMACTVAVEEVIA
EHYNDQVRALMTWEDEGELRNLFREFRDDELEHKDTGIQYDAEKAPFYRA
LSDVIQAGCRAAITITERV*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:37883..38542+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1823.t1 ID=Gcaud1823.t1|Name=Gcaud1823.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:37883..38542+ (Gracilaria caudata M_176_S67 male)
ATGTTTTTGGCCGTATCCCGCAGAGCAAGGAAAGTACAAAGCCTGTCTTC
TCTTCGGCTTTACTGCTCTTCAGCTGCTCTTGATGAGGACAAATCTCAGC
GGTCGAGGGCACAATTTCGATCGCCATTTCTGACTGATCCCAGAAAGAAG
AAAATCATAGACCGCATGCTTCGGGTTGATCACGCTGGCGAAATTGGTGC
GCGGCAGATTTACGCTGGGCAGTTGGCAGTGTTTCGAAACACACCAGTTG
GTAAGGTAATTAGGGAAATGGCTGAACAAGAGCAGAAACATCTGGACGCA
TTCGATAAGCTCATTAAGAATCGACGCGTTCGTCCCACTGCAATGCTACC
TATCTGGAATGTTGCGGGCTATGCATTGGGTCTTGGTACTGCTCTGCTTG
GCAAAGAAGCTGCCATGGCATGCACTGTAGCTGTGGAAGAGGTGATCGCG
GAGCATTACAACGACCAAGTTAGAGCACTAATGACATGGGAGGACGAAGG
AGAACTTCGTAATCTGTTCCGAGAATTCCGAGATGATGAACTCGAACACA
AAGACACTGGAATCCAGTATGACGCTGAGAAGGCTCCATTCTACCGAGCA
CTAAGCGACGTTATCCAAGCAGGATGTCGTGCAGCCATAACTATCACAGA
GCGAGTTTAA

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:37883..38542+

>Gcaud1823.t1 ID=Gcaud1823.t1|Name=Gcaud1823.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=660bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:37883..38542+ (Gracilaria caudata M_176_S67 male)
ATGTTTTTGGCCGTATCCCGCAGAGCAAGGAAAGTACAAAGCCTGTCTTC
TCTTCGGCTTTACTGCTCTTCAGCTGCTCTTGATGAGGACAAATCTCAGC
GGTCGAGGGCACAATTTCGATCGCCATTTCTGACTGATCCCAGAAAGAAG
AAAATCATAGACCGCATGCTTCGGGTTGATCACGCTGGCGAAATTGGTGC
GCGGCAGATTTACGCTGGGCAGTTGGCAGTGTTTCGAAACACACCAGTTG
GTAAGGTAATTAGGGAAATGGCTGAACAAGAGCAGAAACATCTGGACGCA
TTCGATAAGCTCATTAAGAATCGACGCGTTCGTCCCACTGCAATGCTACC
TATCTGGAATGTTGCGGGCTATGCATTGGGTCTTGGTACTGCTCTGCTTG
GCAAAGAAGCTGCCATGGCATGCACTGTAGCTGTGGAAGAGGTGATCGCG
GAGCATTACAACGACCAAGTTAGAGCACTAATGACATGGGAGGACGAAGG
AGAACTTCGTAATCTGTTCCGAGAATTCCGAGATGATGAACTCGAACACA
AAGACACTGGAATCCAGTATGACGCTGAGAAGGCTCCATTCTACCGAGCA
CTAAGCGACGTTATCCAAGCAGGATGTCGTGCAGCCATAACTATCACAGA
GCGAGTTTAA