Gcaud1822.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1822.t1
Unique NameGcaud1822.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:36602..37527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_06913T0
Preferred namerpl8
PFAMsRibosomal_L7Ae
Max annot lvl4751|Fungi
KEGG koko:K02936
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000470,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.06e-101
EggNOG OGsCOG1358@1|root,KOG3166@2759|Eukaryota,38EEJ@33154|Opisthokonta,3NUET@4751|Fungi
Descriptionribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03009,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1822Gcaud1822Gracilaria caudata M_176_S67 malegeneNODE_23_length_76035_cov_4.613123 36602..37527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1822.t1Gcaud1822.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_23_length_76035_cov_4.613123 36602..37527 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1822.t1.stop1Gcaud1822.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_23_length_76035_cov_4.613123 36602..36604 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1822.t1.CDS1Gcaud1822.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_23_length_76035_cov_4.613123 36602..37402 -
Gcaud1822.t1.CDS2Gcaud1822.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_23_length_76035_cov_4.613123 37525..37527 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1822.t1.exon1Gcaud1822.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_23_length_76035_cov_4.613123 36602..37402 -
Gcaud1822.t1.exon2Gcaud1822.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_23_length_76035_cov_4.613123 37525..37527 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1822.t1.intron1Gcaud1822.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_23_length_76035_cov_4.613123 37403..37524 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1822.t1.start1Gcaud1822.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_23_length_76035_cov_4.613123 37525..37527 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1822.t1 ID=Gcaud1822.t1|Name=Gcaud1822.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=268bp
MGKSRGKGRTPAPPPLAAKQVVVKKPKNPLFEKRPKNFGIGQDVLPSRIN
LGRYVKWPKYVRLQRQRKILLVRLKVPPAINQFRLPMDASTTSALFKLMS
KYKPETSIQKAQRLAELGEASEAGRDATRTKKPICLKFGINHVTELIEQK
KASLVVMAHDVDPIELIVWLPALCRKMDVPYCIIRSSARLGTVVHQKTAT
AVAFTQVRPEDKAELTKIIESCNSSFAERYEDVRKRWGGGIMGIKSNHKS
EKKRKALAAEEAKRIGT*
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spliced messenger RNA

>Gcaud1822.t1 ID=Gcaud1822.t1|Name=Gcaud1822.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=804bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:36602..37527- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAAAAGTAGAGGAAAGGGACGCACACCAGCGCCGCCACCACTTGC
AGCCAAGCAGGTGGTGGTCAAGAAGCCGAAGAATCCGCTCTTCGAGAAGC
GTCCGAAGAACTTCGGCATCGGACAAGACGTGTTGCCAAGCCGCATCAAT
TTGGGCCGATATGTGAAGTGGCCGAAGTACGTGCGACTTCAGCGCCAGCG
TAAGATTCTCTTGGTGCGTCTCAAGGTCCCGCCGGCAATCAATCAGTTCC
GCTTGCCTATGGATGCCTCCACCACTAGCGCGTTGTTCAAGCTCATGTCA
AAGTACAAGCCCGAGACTTCTATTCAAAAGGCGCAGCGCTTGGCTGAACT
CGGTGAAGCTAGCGAAGCCGGCCGTGATGCGACTCGCACGAAGAAGCCGA
TCTGCTTGAAGTTCGGTATCAATCATGTCACTGAACTCATTGAACAGAAG
AAGGCGTCTCTTGTGGTAATGGCACATGATGTCGATCCAATCGAACTCAT
CGTGTGGCTTCCGGCCCTTTGCCGGAAGATGGATGTGCCCTACTGTATTA
TTCGCAGCTCTGCTCGCTTGGGTACTGTGGTGCACCAGAAGACGGCCACC
GCAGTTGCCTTCACTCAGGTTCGCCCAGAAGACAAGGCAGAGCTCACCAA
GATAATTGAAAGCTGCAACTCCAGCTTTGCTGAGCGCTACGAAGATGTGC
GCAAGAGATGGGGTGGTGGTATAATGGGTATCAAATCCAACCACAAATCC
GAGAAGAAGAGGAAAGCTTTGGCTGCTGAGGAAGCCAAGCGTATCGGAAC
ATAA
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protein sequence of Gcaud1822.t1

>Gcaud1822.t1 ID=Gcaud1822.t1|Name=Gcaud1822.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=268bp
MGKSRGKGRTPAPPPLAAKQVVVKKPKNPLFEKRPKNFGIGQDVLPSRIN
LGRYVKWPKYVRLQRQRKILLVRLKVPPAINQFRLPMDASTTSALFKLMS
KYKPETSIQKAQRLAELGEASEAGRDATRTKKPICLKFGINHVTELIEQK
KASLVVMAHDVDPIELIVWLPALCRKMDVPYCIIRSSARLGTVVHQKTAT
AVAFTQVRPEDKAELTKIIESCNSSFAERYEDVRKRWGGGIMGIKSNHKS
EKKRKALAAEEAKRIGT*
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mRNA from alignment at NODE_23_length_76035_cov_4.613123:36602..37527-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1822.t1 ID=Gcaud1822.t1|Name=Gcaud1822.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=926bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:36602..37527- (Gracilaria caudata M_176_S67 male)
ATGGTAAGTCCATTCCAAGCGGCAAATAACTTGTCCATCGGTAAAACATC
TGAAGGCGAACTGTTTACCAAGCTGCGTGAACCATGTTTCTGACCAATAT
GTCTGCTCTGCTATCAATATGGTAGGGTAAAAGTAGAGGAAAGGGACGCA
CACCAGCGCCGCCACCACTTGCAGCCAAGCAGGTGGTGGTCAAGAAGCCG
AAGAATCCGCTCTTCGAGAAGCGTCCGAAGAACTTCGGCATCGGACAAGA
CGTGTTGCCAAGCCGCATCAATTTGGGCCGATATGTGAAGTGGCCGAAGT
ACGTGCGACTTCAGCGCCAGCGTAAGATTCTCTTGGTGCGTCTCAAGGTC
CCGCCGGCAATCAATCAGTTCCGCTTGCCTATGGATGCCTCCACCACTAG
CGCGTTGTTCAAGCTCATGTCAAAGTACAAGCCCGAGACTTCTATTCAAA
AGGCGCAGCGCTTGGCTGAACTCGGTGAAGCTAGCGAAGCCGGCCGTGAT
GCGACTCGCACGAAGAAGCCGATCTGCTTGAAGTTCGGTATCAATCATGT
CACTGAACTCATTGAACAGAAGAAGGCGTCTCTTGTGGTAATGGCACATG
ATGTCGATCCAATCGAACTCATCGTGTGGCTTCCGGCCCTTTGCCGGAAG
ATGGATGTGCCCTACTGTATTATTCGCAGCTCTGCTCGCTTGGGTACTGT
GGTGCACCAGAAGACGGCCACCGCAGTTGCCTTCACTCAGGTTCGCCCAG
AAGACAAGGCAGAGCTCACCAAGATAATTGAAAGCTGCAACTCCAGCTTT
GCTGAGCGCTACGAAGATGTGCGCAAGAGATGGGGTGGTGGTATAATGGG
TATCAAATCCAACCACAAATCCGAGAAGAAGAGGAAAGCTTTGGCTGCTG
AGGAAGCCAAGCGTATCGGAACATAA
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Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:36602..37527-

>Gcaud1822.t1 ID=Gcaud1822.t1|Name=Gcaud1822.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=804bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:36602..37527- (Gracilaria caudata M_176_S67 male)
ATGGGTAAAAGTAGAGGAAAGGGACGCACACCAGCGCCGCCACCACTTGC
AGCCAAGCAGGTGGTGGTCAAGAAGCCGAAGAATCCGCTCTTCGAGAAGC
GTCCGAAGAACTTCGGCATCGGACAAGACGTGTTGCCAAGCCGCATCAAT
TTGGGCCGATATGTGAAGTGGCCGAAGTACGTGCGACTTCAGCGCCAGCG
TAAGATTCTCTTGGTGCGTCTCAAGGTCCCGCCGGCAATCAATCAGTTCC
GCTTGCCTATGGATGCCTCCACCACTAGCGCGTTGTTCAAGCTCATGTCA
AAGTACAAGCCCGAGACTTCTATTCAAAAGGCGCAGCGCTTGGCTGAACT
CGGTGAAGCTAGCGAAGCCGGCCGTGATGCGACTCGCACGAAGAAGCCGA
TCTGCTTGAAGTTCGGTATCAATCATGTCACTGAACTCATTGAACAGAAG
AAGGCGTCTCTTGTGGTAATGGCACATGATGTCGATCCAATCGAACTCAT
CGTGTGGCTTCCGGCCCTTTGCCGGAAGATGGATGTGCCCTACTGTATTA
TTCGCAGCTCTGCTCGCTTGGGTACTGTGGTGCACCAGAAGACGGCCACC
GCAGTTGCCTTCACTCAGGTTCGCCCAGAAGACAAGGCAGAGCTCACCAA
GATAATTGAAAGCTGCAACTCCAGCTTTGCTGAGCGCTACGAAGATGTGC
GCAAGAGATGGGGTGGTGGTATAATGGGTATCAAATCCAACCACAAATCC
GAGAAGAAGAGGAAAGCTTTGGCTGCTGAGGAAGCCAAGCGTATCGGAAC
ATAA
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