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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005707242.1 |
| Preferred name | MES1 |
| PFAMs | Anticodon_1,MetRS-N,WHEP-TRS,tRNA-synt_1g,tRNA_bind |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00055,RC00523 |
| KEGG ko | ko:K01874,ko:K04567 |
| KEGG Reaction | R03658,R03659,R04773 |
| KEGG Pathway | ko00450,ko00970,map00450,map00970 |
| KEGG Module | M00359,M00360 |
| GOs | GO:0002181,GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017102,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 |
| Evalue | 2.27e-284 |
| EggNOG OGs | COG0143@1|root,KOG1247@2759|Eukaryota,KOG2241@2759|Eukaryota |
| EC | 6.1.1.10,6.1.1.6 |
| Description | tRNA binding |
| COG category | J |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1818.t1.start1 | Gcaud1818.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_23_length_76035_cov_4.613123 25178..25180 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1818.t1.stop1 | Gcaud1818.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_23_length_76035_cov_4.613123 27446..27448 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1818.t1 ID=Gcaud1818.t1|Name=Gcaud1818.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=757bp MAEGAEYPLPSRSRRNILVTSALPYVNNYPHLGNIIGAVLSADVYSRYAR QRSFNVIYVCGTDEYGTATETKAQQEGLTPRQICDKYHALHKQVYAWFDI NFDVFGRTSTDAHTTIVQSVFERVYDNGYVTQDTITQLYCEKVCHRFLAD RYVNGDCPNCGFDDARGDQCDNCGRMLNPAELLRPRCSTCGNEPVSRSTT HLFLDLPKLQPELEKWVANASERGKWTNNALAMTRTWLNDQLKARCITRD LKWGVPVPLDGFTDKVFYVWFDAPLGYPSITAKLCGEDWKKWWLPDEGED IKLVQFMGKDNVPFHTIVFPGALIATNDSWTMLHHISTTDYLNYEDGKFS KSRGVGVFGNDAIASGIPSEVWRYYLLLNRPEGSDAVFTWDDLAVKNNDE LIKTLGNFMNRVITFLHKSFKGVVPELIPNDEEDEEFTKKVNIELKEYKR LMDEVSLKAGLKKAMAIASIGNLYLQRKEPWNLLKEGDTRTAGSALTYAA NLAVLVTVILEPFLGTKFSVKVFSQLGLQHKAGESNLIPERFEALQWIKA GMKTGKPQILFTSLTKDQVAEFRRKFSGDASNTEQKEKNDEKRFALDLRV GRIVDVREHQESERLFVGKVDVGEDDVRTVVAGLRDVYTADELNGRKVVL VCNLAAANLAGVESQGMILVAEKKKITKVLSVDESVSVGNRIVAQDVSVG DLEKRLDRKGFQTASKLLRVGKNGEIVYDKKHRLVVHGKEQLGVSSQGVA EGGKVK* back to topspliced messenger RNA >Gcaud1818.t1 ID=Gcaud1818.t1|Name=Gcaud1818.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2271bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:25178..27448+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTGAAGGCGCCGAGTATCCCCTTCCAAGCCGTTCAAGGCGCAATAT CCTCGTTACTTCAGCTCTTCCATACGTCAATAACTACCCTCATTTGGGAA ACATAATCGGAGCAGTTTTATCCGCCGATGTTTACTCTCGATATGCTCGT CAAAGATCATTTAATGTGATATACGTTTGTGGGACTGATGAGTACGGTAC TGCGACTGAAACCAAGGCACAACAAGAAGGACTAACTCCTCGTCAGATAT GCGATAAATACCATGCACTTCATAAACAAGTTTATGCGTGGTTCGACATA AATTTTGATGTGTTTGGAAGGACAAGCACGGATGCCCATACTACCATCGT ACAATCTGTCTTTGAAAGGGTTTATGACAATGGTTATGTCACACAGGATA CAATAACACAGCTGTACTGCGAGAAGGTTTGTCATCGTTTCTTAGCTGAT CGCTATGTGAATGGTGATTGTCCCAATTGTGGATTTGATGATGCCAGGGG TGATCAGTGCGACAACTGCGGTCGTATGCTCAATCCCGCAGAGTTGTTAC GTCCAAGATGCTCTACATGTGGAAATGAACCGGTTTCGAGGTCTACGACG CATCTTTTCTTGGATTTGCCAAAATTGCAGCCTGAATTGGAAAAGTGGGT GGCAAACGCTTCTGAAAGAGGAAAATGGACAAACAATGCGCTTGCGATGA CTCGAACATGGCTGAATGACCAGCTCAAAGCTCGATGCATTACGAGAGAC CTGAAATGGGGTGTTCCTGTTCCTCTGGACGGTTTTACTGATAAAGTTTT TTATGTTTGGTTTGACGCTCCGTTAGGGTATCCTTCTATAACCGCTAAAT TATGCGGTGAAGATTGGAAGAAATGGTGGCTTCCTGATGAAGGTGAGGAC ATTAAGCTCGTGCAGTTCATGGGAAAGGATAATGTTCCATTTCATACTAT AGTGTTCCCCGGTGCCTTAATTGCTACAAACGACTCATGGACTATGTTAC ACCACATTTCAACCACAGATTACCTGAACTACGAAGACGGGAAGTTTAGC AAAAGTCGTGGTGTAGGCGTGTTTGGAAACGACGCTATCGCTTCGGGAAT TCCTTCTGAGGTTTGGAGATATTATCTGTTACTTAATCGTCCAGAAGGAT CGGATGCGGTATTCACCTGGGACGATCTCGCTGTGAAGAATAACGATGAA CTTATCAAAACGTTAGGCAACTTCATGAATCGCGTAATCACTTTTCTACA CAAGTCATTCAAGGGTGTAGTGCCTGAATTAATACCAAACGATGAAGAAG ACGAAGAGTTCACAAAGAAAGTGAACATAGAACTGAAGGAATACAAACGA CTCATGGACGAGGTAAGTTTGAAAGCTGGTTTGAAGAAAGCAATGGCAAT TGCCAGCATTGGAAACTTATATCTACAGAGAAAAGAACCTTGGAATTTGC TGAAAGAAGGAGATACTCGCACGGCAGGTAGCGCTCTTACTTACGCTGCG AATCTGGCAGTGTTAGTGACAGTAATTTTGGAGCCGTTTTTGGGAACAAA GTTTTCAGTGAAGGTATTCTCCCAACTGGGCTTGCAGCATAAAGCAGGTG AAAGCAATTTGATACCAGAGAGGTTTGAGGCTTTGCAATGGATTAAAGCG GGTATGAAAACAGGAAAACCACAGATTTTGTTCACCTCACTCACAAAAGA TCAGGTGGCAGAGTTTAGAAGAAAATTCAGTGGAGATGCTTCAAACACTG AACAGAAGGAGAAGAACGACGAAAAACGTTTCGCTCTTGACCTGAGAGTT GGAAGAATTGTGGACGTTCGTGAGCACCAGGAATCTGAACGTTTGTTTGT GGGCAAAGTGGATGTTGGAGAAGATGATGTTCGTACTGTTGTTGCTGGTT TACGTGATGTGTACACTGCTGACGAACTGAATGGAAGAAAAGTGGTATTG GTTTGTAATCTGGCAGCGGCCAATCTGGCTGGCGTCGAGTCTCAAGGAAT GATCTTGGTGGCCGAAAAGAAGAAGATTACAAAAGTATTAAGCGTGGATG AGAGCGTGTCTGTGGGCAATCGAATTGTGGCGCAGGATGTTAGTGTGGGC GATCTAGAGAAAAGGCTGGATCGAAAAGGATTTCAAACGGCCAGCAAGTT GCTACGAGTTGGGAAGAATGGAGAAATTGTGTACGATAAGAAGCACCGCC TTGTGGTGCATGGGAAGGAGCAGTTGGGAGTGAGTTCACAAGGAGTTGCG GAGGGTGGAAAAGTGAAGTAG back to topprotein sequence of Gcaud1818.t1 >Gcaud1818.t1 ID=Gcaud1818.t1|Name=Gcaud1818.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=757bp
MAEGAEYPLPSRSRRNILVTSALPYVNNYPHLGNIIGAVLSADVYSRYAR QRSFNVIYVCGTDEYGTATETKAQQEGLTPRQICDKYHALHKQVYAWFDI NFDVFGRTSTDAHTTIVQSVFERVYDNGYVTQDTITQLYCEKVCHRFLAD RYVNGDCPNCGFDDARGDQCDNCGRMLNPAELLRPRCSTCGNEPVSRSTT HLFLDLPKLQPELEKWVANASERGKWTNNALAMTRTWLNDQLKARCITRD LKWGVPVPLDGFTDKVFYVWFDAPLGYPSITAKLCGEDWKKWWLPDEGED IKLVQFMGKDNVPFHTIVFPGALIATNDSWTMLHHISTTDYLNYEDGKFS KSRGVGVFGNDAIASGIPSEVWRYYLLLNRPEGSDAVFTWDDLAVKNNDE LIKTLGNFMNRVITFLHKSFKGVVPELIPNDEEDEEFTKKVNIELKEYKR LMDEVSLKAGLKKAMAIASIGNLYLQRKEPWNLLKEGDTRTAGSALTYAA NLAVLVTVILEPFLGTKFSVKVFSQLGLQHKAGESNLIPERFEALQWIKA GMKTGKPQILFTSLTKDQVAEFRRKFSGDASNTEQKEKNDEKRFALDLRV GRIVDVREHQESERLFVGKVDVGEDDVRTVVAGLRDVYTADELNGRKVVL VCNLAAANLAGVESQGMILVAEKKKITKVLSVDESVSVGNRIVAQDVSVG DLEKRLDRKGFQTASKLLRVGKNGEIVYDKKHRLVVHGKEQLGVSSQGVA EGGKVK* back to topmRNA from alignment at NODE_23_length_76035_cov_4.613123:25178..27448+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1818.t1 ID=Gcaud1818.t1|Name=Gcaud1818.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2271bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:25178..27448+ (Gracilaria caudata M_176_S67 male) ATGGCTGAAGGCGCCGAGTATCCCCTTCCAAGCCGTTCAAGGCGCAATAT
CCTCGTTACTTCAGCTCTTCCATACGTCAATAACTACCCTCATTTGGGAA
ACATAATCGGAGCAGTTTTATCCGCCGATGTTTACTCTCGATATGCTCGT
CAAAGATCATTTAATGTGATATACGTTTGTGGGACTGATGAGTACGGTAC
TGCGACTGAAACCAAGGCACAACAAGAAGGACTAACTCCTCGTCAGATAT
GCGATAAATACCATGCACTTCATAAACAAGTTTATGCGTGGTTCGACATA
AATTTTGATGTGTTTGGAAGGACAAGCACGGATGCCCATACTACCATCGT
ACAATCTGTCTTTGAAAGGGTTTATGACAATGGTTATGTCACACAGGATA
CAATAACACAGCTGTACTGCGAGAAGGTTTGTCATCGTTTCTTAGCTGAT
CGCTATGTGAATGGTGATTGTCCCAATTGTGGATTTGATGATGCCAGGGG
TGATCAGTGCGACAACTGCGGTCGTATGCTCAATCCCGCAGAGTTGTTAC
GTCCAAGATGCTCTACATGTGGAAATGAACCGGTTTCGAGGTCTACGACG
CATCTTTTCTTGGATTTGCCAAAATTGCAGCCTGAATTGGAAAAGTGGGT
GGCAAACGCTTCTGAAAGAGGAAAATGGACAAACAATGCGCTTGCGATGA
CTCGAACATGGCTGAATGACCAGCTCAAAGCTCGATGCATTACGAGAGAC
CTGAAATGGGGTGTTCCTGTTCCTCTGGACGGTTTTACTGATAAAGTTTT
TTATGTTTGGTTTGACGCTCCGTTAGGGTATCCTTCTATAACCGCTAAAT
TATGCGGTGAAGATTGGAAGAAATGGTGGCTTCCTGATGAAGGTGAGGAC
ATTAAGCTCGTGCAGTTCATGGGAAAGGATAATGTTCCATTTCATACTAT
AGTGTTCCCCGGTGCCTTAATTGCTACAAACGACTCATGGACTATGTTAC
ACCACATTTCAACCACAGATTACCTGAACTACGAAGACGGGAAGTTTAGC
AAAAGTCGTGGTGTAGGCGTGTTTGGAAACGACGCTATCGCTTCGGGAAT
TCCTTCTGAGGTTTGGAGATATTATCTGTTACTTAATCGTCCAGAAGGAT
CGGATGCGGTATTCACCTGGGACGATCTCGCTGTGAAGAATAACGATGAA
CTTATCAAAACGTTAGGCAACTTCATGAATCGCGTAATCACTTTTCTACA
CAAGTCATTCAAGGGTGTAGTGCCTGAATTAATACCAAACGATGAAGAAG
ACGAAGAGTTCACAAAGAAAGTGAACATAGAACTGAAGGAATACAAACGA
CTCATGGACGAGGTAAGTTTGAAAGCTGGTTTGAAGAAAGCAATGGCAAT
TGCCAGCATTGGAAACTTATATCTACAGAGAAAAGAACCTTGGAATTTGC
TGAAAGAAGGAGATACTCGCACGGCAGGTAGCGCTCTTACTTACGCTGCG
AATCTGGCAGTGTTAGTGACAGTAATTTTGGAGCCGTTTTTGGGAACAAA
GTTTTCAGTGAAGGTATTCTCCCAACTGGGCTTGCAGCATAAAGCAGGTG
AAAGCAATTTGATACCAGAGAGGTTTGAGGCTTTGCAATGGATTAAAGCG
GGTATGAAAACAGGAAAACCACAGATTTTGTTCACCTCACTCACAAAAGA
TCAGGTGGCAGAGTTTAGAAGAAAATTCAGTGGAGATGCTTCAAACACTG
AACAGAAGGAGAAGAACGACGAAAAACGTTTCGCTCTTGACCTGAGAGTT
GGAAGAATTGTGGACGTTCGTGAGCACCAGGAATCTGAACGTTTGTTTGT
GGGCAAAGTGGATGTTGGAGAAGATGATGTTCGTACTGTTGTTGCTGGTT
TACGTGATGTGTACACTGCTGACGAACTGAATGGAAGAAAAGTGGTATTG
GTTTGTAATCTGGCAGCGGCCAATCTGGCTGGCGTCGAGTCTCAAGGAAT
GATCTTGGTGGCCGAAAAGAAGAAGATTACAAAAGTATTAAGCGTGGATG
AGAGCGTGTCTGTGGGCAATCGAATTGTGGCGCAGGATGTTAGTGTGGGC
GATCTAGAGAAAAGGCTGGATCGAAAAGGATTTCAAACGGCCAGCAAGTT
GCTACGAGTTGGGAAGAATGGAGAAATTGTGTACGATAAGAAGCACCGCC
TTGTGGTGCATGGGAAGGAGCAGTTGGGAGTGAGTTCACAAGGAGTTGCG
GAGGGTGGAAAAGTGAAGTAG back to topCoding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:25178..27448+ >Gcaud1818.t1 ID=Gcaud1818.t1|Name=Gcaud1818.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2271bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:25178..27448+ (Gracilaria caudata M_176_S67 male) ATGGCTGAAGGCGCCGAGTATCCCCTTCCAAGCCGTTCAAGGCGCAATAT CCTCGTTACTTCAGCTCTTCCATACGTCAATAACTACCCTCATTTGGGAA ACATAATCGGAGCAGTTTTATCCGCCGATGTTTACTCTCGATATGCTCGT CAAAGATCATTTAATGTGATATACGTTTGTGGGACTGATGAGTACGGTAC TGCGACTGAAACCAAGGCACAACAAGAAGGACTAACTCCTCGTCAGATAT GCGATAAATACCATGCACTTCATAAACAAGTTTATGCGTGGTTCGACATA AATTTTGATGTGTTTGGAAGGACAAGCACGGATGCCCATACTACCATCGT ACAATCTGTCTTTGAAAGGGTTTATGACAATGGTTATGTCACACAGGATA CAATAACACAGCTGTACTGCGAGAAGGTTTGTCATCGTTTCTTAGCTGAT CGCTATGTGAATGGTGATTGTCCCAATTGTGGATTTGATGATGCCAGGGG TGATCAGTGCGACAACTGCGGTCGTATGCTCAATCCCGCAGAGTTGTTAC GTCCAAGATGCTCTACATGTGGAAATGAACCGGTTTCGAGGTCTACGACG CATCTTTTCTTGGATTTGCCAAAATTGCAGCCTGAATTGGAAAAGTGGGT GGCAAACGCTTCTGAAAGAGGAAAATGGACAAACAATGCGCTTGCGATGA CTCGAACATGGCTGAATGACCAGCTCAAAGCTCGATGCATTACGAGAGAC CTGAAATGGGGTGTTCCTGTTCCTCTGGACGGTTTTACTGATAAAGTTTT TTATGTTTGGTTTGACGCTCCGTTAGGGTATCCTTCTATAACCGCTAAAT TATGCGGTGAAGATTGGAAGAAATGGTGGCTTCCTGATGAAGGTGAGGAC ATTAAGCTCGTGCAGTTCATGGGAAAGGATAATGTTCCATTTCATACTAT AGTGTTCCCCGGTGCCTTAATTGCTACAAACGACTCATGGACTATGTTAC ACCACATTTCAACCACAGATTACCTGAACTACGAAGACGGGAAGTTTAGC AAAAGTCGTGGTGTAGGCGTGTTTGGAAACGACGCTATCGCTTCGGGAAT TCCTTCTGAGGTTTGGAGATATTATCTGTTACTTAATCGTCCAGAAGGAT CGGATGCGGTATTCACCTGGGACGATCTCGCTGTGAAGAATAACGATGAA CTTATCAAAACGTTAGGCAACTTCATGAATCGCGTAATCACTTTTCTACA CAAGTCATTCAAGGGTGTAGTGCCTGAATTAATACCAAACGATGAAGAAG ACGAAGAGTTCACAAAGAAAGTGAACATAGAACTGAAGGAATACAAACGA CTCATGGACGAGGTAAGTTTGAAAGCTGGTTTGAAGAAAGCAATGGCAAT TGCCAGCATTGGAAACTTATATCTACAGAGAAAAGAACCTTGGAATTTGC TGAAAGAAGGAGATACTCGCACGGCAGGTAGCGCTCTTACTTACGCTGCG AATCTGGCAGTGTTAGTGACAGTAATTTTGGAGCCGTTTTTGGGAACAAA GTTTTCAGTGAAGGTATTCTCCCAACTGGGCTTGCAGCATAAAGCAGGTG AAAGCAATTTGATACCAGAGAGGTTTGAGGCTTTGCAATGGATTAAAGCG GGTATGAAAACAGGAAAACCACAGATTTTGTTCACCTCACTCACAAAAGA TCAGGTGGCAGAGTTTAGAAGAAAATTCAGTGGAGATGCTTCAAACACTG AACAGAAGGAGAAGAACGACGAAAAACGTTTCGCTCTTGACCTGAGAGTT GGAAGAATTGTGGACGTTCGTGAGCACCAGGAATCTGAACGTTTGTTTGT GGGCAAAGTGGATGTTGGAGAAGATGATGTTCGTACTGTTGTTGCTGGTT TACGTGATGTGTACACTGCTGACGAACTGAATGGAAGAAAAGTGGTATTG GTTTGTAATCTGGCAGCGGCCAATCTGGCTGGCGTCGAGTCTCAAGGAAT GATCTTGGTGGCCGAAAAGAAGAAGATTACAAAAGTATTAAGCGTGGATG AGAGCGTGTCTGTGGGCAATCGAATTGTGGCGCAGGATGTTAGTGTGGGC GATCTAGAGAAAAGGCTGGATCGAAAAGGATTTCAAACGGCCAGCAAGTT GCTACGAGTTGGGAAGAATGGAGAAATTGTGTACGATAAGAAGCACCGCC TTGTGGTGCATGGGAAGGAGCAGTTGGGAGTGAGTTCACAAGGAGTTGCG GAGGGTGGAAAAGTGAAGTAG back to top
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