Gcaud1815.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1815.t1
Unique NameGcaud1815.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:17038..17700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706192.1
PFAMsPeptidase_S24
Max annot lvl2759|Eukaryota
KEGG koko:K09647
KEGG Pathwayko03060,map03060
Evalue5.25e-36
EggNOG OGsCOG0681@1|root,KOG1568@2759|Eukaryota
Descriptionprotein processing involved in protein targeting to mitochondrion
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1815Gcaud1815Gracilaria caudata M_176_S67 malegeneNODE_23_length_76035_cov_4.613123 17038..17700 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1815.t1.stop1Gcaud1815.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_23_length_76035_cov_4.613123 17038..17040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1815.t1.CDS1Gcaud1815.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_23_length_76035_cov_4.613123 17038..17700 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1815.t1.exon1Gcaud1815.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_23_length_76035_cov_4.613123 17038..17700 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1815.t1.start1Gcaud1815.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_23_length_76035_cov_4.613123 17698..17700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1815.t1Gcaud1815.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_23_length_76035_cov_4.613123 17038..17700 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1815.t1 ID=Gcaud1815.t1|Name=Gcaud1815.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=221bp
MVRLLYRLLRAFNFVGSANENQRRSAMRSSSLLRDLIVADLEKPLSYSLP
LTGNAMSPIFNANVNDMRTAHDRLVIRRLSGSTQSFLNRVYVDDVVVITD
PNDARRKYVRRISAMEGAQMHSVHGDPPFSIPKSHCWVERENTQADAPDS
SSFGPLSLQNVIGRVMYAIRSATDHGRVKNSPYAMASDSIVLAHENVSKH
FNSPPPPQSQSQSGTQDKSN*
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spliced messenger RNA

>Gcaud1815.t1 ID=Gcaud1815.t1|Name=Gcaud1815.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=663bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:17038..17700- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCGGTTGCTGTATCGTCTCTTGAGGGCGTTCAACTTTGTGGGCTC
GGCGAATGAGAATCAGAGACGTTCCGCAATGCGTTCTTCATCGTTGTTGA
GAGACCTCATAGTCGCTGATTTGGAGAAGCCTCTCTCATACTCTTTGCCA
CTGACTGGCAATGCCATGAGTCCTATCTTCAATGCCAACGTCAATGACAT
GCGTACCGCTCATGACCGTCTCGTTATTCGTCGACTTTCAGGCAGTACGC
AGTCGTTTCTCAACAGAGTTTATGTAGATGACGTCGTAGTCATCACCGAC
CCCAACGACGCACGTCGAAAGTATGTACGAAGAATATCCGCAATGGAAGG
CGCTCAGATGCATAGCGTCCACGGCGACCCACCGTTCAGCATTCCAAAGA
GTCATTGCTGGGTAGAACGAGAAAATACACAAGCTGATGCCCCAGATAGT
TCTTCTTTTGGACCACTGAGTCTTCAAAATGTTATCGGAAGAGTTATGTA
TGCCATCAGAAGTGCTACTGATCACGGTCGAGTAAAAAACTCTCCGTATG
CTATGGCCAGTGATTCTATTGTCCTTGCTCATGAAAACGTGTCTAAACAT
TTCAATTCTCCACCGCCACCGCAATCGCAATCACAATCAGGAACACAAGA
CAAGTCGAACTAG
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protein sequence of Gcaud1815.t1

>Gcaud1815.t1 ID=Gcaud1815.t1|Name=Gcaud1815.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=221bp
MVRLLYRLLRAFNFVGSANENQRRSAMRSSSLLRDLIVADLEKPLSYSLP
LTGNAMSPIFNANVNDMRTAHDRLVIRRLSGSTQSFLNRVYVDDVVVITD
PNDARRKYVRRISAMEGAQMHSVHGDPPFSIPKSHCWVERENTQADAPDS
SSFGPLSLQNVIGRVMYAIRSATDHGRVKNSPYAMASDSIVLAHENVSKH
FNSPPPPQSQSQSGTQDKSN*
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mRNA from alignment at NODE_23_length_76035_cov_4.613123:17038..17700-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1815.t1 ID=Gcaud1815.t1|Name=Gcaud1815.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=663bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:17038..17700- (Gracilaria caudata M_176_S67 male)
ATGGTTCGGTTGCTGTATCGTCTCTTGAGGGCGTTCAACTTTGTGGGCTC
GGCGAATGAGAATCAGAGACGTTCCGCAATGCGTTCTTCATCGTTGTTGA
GAGACCTCATAGTCGCTGATTTGGAGAAGCCTCTCTCATACTCTTTGCCA
CTGACTGGCAATGCCATGAGTCCTATCTTCAATGCCAACGTCAATGACAT
GCGTACCGCTCATGACCGTCTCGTTATTCGTCGACTTTCAGGCAGTACGC
AGTCGTTTCTCAACAGAGTTTATGTAGATGACGTCGTAGTCATCACCGAC
CCCAACGACGCACGTCGAAAGTATGTACGAAGAATATCCGCAATGGAAGG
CGCTCAGATGCATAGCGTCCACGGCGACCCACCGTTCAGCATTCCAAAGA
GTCATTGCTGGGTAGAACGAGAAAATACACAAGCTGATGCCCCAGATAGT
TCTTCTTTTGGACCACTGAGTCTTCAAAATGTTATCGGAAGAGTTATGTA
TGCCATCAGAAGTGCTACTGATCACGGTCGAGTAAAAAACTCTCCGTATG
CTATGGCCAGTGATTCTATTGTCCTTGCTCATGAAAACGTGTCTAAACAT
TTCAATTCTCCACCGCCACCGCAATCGCAATCACAATCAGGAACACAAGA
CAAGTCGAACTAG
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Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:17038..17700-

>Gcaud1815.t1 ID=Gcaud1815.t1|Name=Gcaud1815.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=663bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:17038..17700- (Gracilaria caudata M_176_S67 male)
ATGGTTCGGTTGCTGTATCGTCTCTTGAGGGCGTTCAACTTTGTGGGCTC
GGCGAATGAGAATCAGAGACGTTCCGCAATGCGTTCTTCATCGTTGTTGA
GAGACCTCATAGTCGCTGATTTGGAGAAGCCTCTCTCATACTCTTTGCCA
CTGACTGGCAATGCCATGAGTCCTATCTTCAATGCCAACGTCAATGACAT
GCGTACCGCTCATGACCGTCTCGTTATTCGTCGACTTTCAGGCAGTACGC
AGTCGTTTCTCAACAGAGTTTATGTAGATGACGTCGTAGTCATCACCGAC
CCCAACGACGCACGTCGAAAGTATGTACGAAGAATATCCGCAATGGAAGG
CGCTCAGATGCATAGCGTCCACGGCGACCCACCGTTCAGCATTCCAAAGA
GTCATTGCTGGGTAGAACGAGAAAATACACAAGCTGATGCCCCAGATAGT
TCTTCTTTTGGACCACTGAGTCTTCAAAATGTTATCGGAAGAGTTATGTA
TGCCATCAGAAGTGCTACTGATCACGGTCGAGTAAAAAACTCTCCGTATG
CTATGGCCAGTGATTCTATTGTCCTTGCTCATGAAAACGTGTCTAAACAT
TTCAATTCTCCACCGCCACCGCAATCGCAATCACAATCAGGAACACAAGA
CAAGTCGAACTAG
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