Gcaud1812.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1812.t1
Unique NameGcaud1812.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:7018..8518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29730.Gorai.001G200300.1
PFAMsMetallophos,PMD
Max annot lvl35493|Streptophyta
KEGG koko:K04460,ko:K15423
KEGG Pathwayko04010,ko04922,map04010,map04922
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009266,GO:0009314,GO:0009408,GO:0009416,GO:0009628,GO:0009637,GO:0009785,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0023052,GO:0030522,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071483,GO:0071704,GO:0104004,GO:0140096,GO:1901564
Evalue2.87e-52
EggNOG OGsCOG0639@1|root,KOG0376@2759|Eukaryota,37KC8@33090|Viridiplantae,3GDZR@35493|Streptophyta
EC3.1.3.16
Descriptionserine threonine-protein phosphatase
COG categoryQ
BRITEko00000,ko00001,ko01000,ko01009,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1812Gcaud1812Gracilaria caudata M_176_S67 malegeneNODE_23_length_76035_cov_4.613123 7018..8518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1812.t1Gcaud1812.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_23_length_76035_cov_4.613123 7018..8518 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1812.t1.start1Gcaud1812.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_23_length_76035_cov_4.613123 7018..7020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1812.t1.CDS1Gcaud1812.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_23_length_76035_cov_4.613123 7018..7529 +
Gcaud1812.t1.CDS2Gcaud1812.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_23_length_76035_cov_4.613123 7606..8255 +
Gcaud1812.t1.CDS3Gcaud1812.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_23_length_76035_cov_4.613123 8331..8518 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1812.t1.exon1Gcaud1812.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_23_length_76035_cov_4.613123 7018..7529 +
Gcaud1812.t1.exon2Gcaud1812.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_23_length_76035_cov_4.613123 7606..8255 +
Gcaud1812.t1.exon3Gcaud1812.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_23_length_76035_cov_4.613123 8331..8518 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1812.t1.intron1Gcaud1812.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_23_length_76035_cov_4.613123 7530..7605 +
Gcaud1812.t1.intron2Gcaud1812.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_23_length_76035_cov_4.613123 8256..8330 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1812.t1.stop1Gcaud1812.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_23_length_76035_cov_4.613123 8516..8518 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1812.t1 ID=Gcaud1812.t1|Name=Gcaud1812.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp
MSCIYSLLAVTDDAGVHGENLESVQPLPWPGIENVNLGYVKALATRLLAA
TFRPPDLLNLFALRKAHLIKILLHAKERFSKEQNIVDIIVPYTGKVHVFG
DTHGDFHSLMEAINNAGLPSSDNIFVFAGDCVDRGCWGVEVVALILALKL
CNPCSVFLVRGNHETTGCTKRYGFENEVRRKYDSKTFDIFCKTFRELPVA
AVLRSLPFEKVSSATMVHPAAGKQRRKSSRGRRKESPLVDVAPLGQGWRA
HPVPGEKRVLVVHGGLFRAWKAQKRCVMTIGDLVDLSEVNRRDDDPYECL
LEDVIWSDPSAKNEVSCNLLRGAGILYGTGAVQSFFKRNGLNGMIRAHEG
PDVRERRADMRSIDDGYSIDMELAEGFVATVFTAADYPPDRPRGNKGAFA
TIYGKGTENKQILPEFTSFTKRDSPTEMQLFYSQEQSEQSATPRTSFSK*
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spliced messenger RNA

>Gcaud1812.t1 ID=Gcaud1812.t1|Name=Gcaud1812.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:7018..8518+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTGCATCTACTCTCTCTTGGCTGTAACGGATGACGCTGGAGTGCA
TGGTGAGAACCTCGAAAGCGTGCAGCCACTGCCATGGCCTGGCATTGAGA
ACGTCAATCTGGGCTACGTTAAGGCGCTTGCGACGCGACTTCTCGCTGCC
ACTTTTCGCCCACCAGACTTGCTAAACCTGTTTGCCTTGCGTAAAGCCCA
CCTAATCAAGATTTTGCTTCATGCGAAAGAACGCTTCTCCAAAGAGCAAA
ACATTGTTGACATTATCGTGCCATACACTGGAAAAGTCCACGTTTTCGGT
GACACACATGGAGACTTTCATTCCTTGATGGAGGCAATCAATAACGCGGG
ATTGCCTTCGTCTGACAACATTTTCGTTTTTGCAGGCGATTGCGTCGACC
GCGGCTGCTGGGGTGTAGAGGTAGTAGCTCTCATTCTTGCTCTTAAACTC
TGTAATCCATGCTCTGTTTTCCTTGTGCGCGGAAATCATGAAACTACTGG
TTGCACCAAACGCTATGGATTTGAAAATGAAGTGCGCAGGAAGTATGATT
CAAAGACTTTTGACATATTCTGCAAAACCTTTAGAGAGCTTCCGGTTGCT
GCTGTCCTAAGGTCATTACCTTTTGAGAAAGTGTCCTCTGCAACAATGGT
TCACCCTGCTGCAGGCAAGCAGCGTCGTAAATCATCAAGAGGTAGGCGGA
AAGAATCTCCACTGGTGGATGTAGCTCCATTAGGTCAGGGCTGGCGTGCC
CATCCAGTACCTGGAGAAAAGCGTGTATTGGTTGTCCATGGCGGACTGTT
CCGCGCATGGAAGGCACAAAAGCGCTGCGTAATGACAATTGGAGATCTTG
TTGACCTGTCGGAAGTAAACCGCCGTGACGATGATCCCTATGAATGTCTT
CTGGAAGATGTTATCTGGAGCGACCCGTCGGCAAAGAACGAGGTGTCATG
TAACTTACTGAGAGGGGCTGGAATTCTATACGGCACTGGGGCCGTGCAAT
CTTTCTTTAAACGAAACGGACTGAATGGAATGATTCGGGCACATGAAGGA
CCTGATGTACGCGAACGCCGAGCCGACATGAGGAGCATAGATGACGGTTA
TTCGATAGATATGGAATTAGCTGAGGGCTTCGTTGCAACTGTTTTCACTG
CAGCCGACTATCCTCCTGATCGACCCCGGGGTAACAAAGGGGCGTTTGCG
ACAATCTATGGAAAAGGAACTGAAAACAAACAGATCTTACCTGAGTTCAC
TTCTTTTACAAAACGCGACTCTCCTACCGAGATGCAGTTGTTCTACTCAC
AGGAGCAAAGCGAACAATCAGCCACTCCACGAACCAGTTTTTCAAAGTAA
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protein sequence of Gcaud1812.t1

>Gcaud1812.t1 ID=Gcaud1812.t1|Name=Gcaud1812.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=450bp
MSCIYSLLAVTDDAGVHGENLESVQPLPWPGIENVNLGYVKALATRLLAA
TFRPPDLLNLFALRKAHLIKILLHAKERFSKEQNIVDIIVPYTGKVHVFG
DTHGDFHSLMEAINNAGLPSSDNIFVFAGDCVDRGCWGVEVVALILALKL
CNPCSVFLVRGNHETTGCTKRYGFENEVRRKYDSKTFDIFCKTFRELPVA
AVLRSLPFEKVSSATMVHPAAGKQRRKSSRGRRKESPLVDVAPLGQGWRA
HPVPGEKRVLVVHGGLFRAWKAQKRCVMTIGDLVDLSEVNRRDDDPYECL
LEDVIWSDPSAKNEVSCNLLRGAGILYGTGAVQSFFKRNGLNGMIRAHEG
PDVRERRADMRSIDDGYSIDMELAEGFVATVFTAADYPPDRPRGNKGAFA
TIYGKGTENKQILPEFTSFTKRDSPTEMQLFYSQEQSEQSATPRTSFSK*
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mRNA from alignment at NODE_23_length_76035_cov_4.613123:7018..8518+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1812.t1 ID=Gcaud1812.t1|Name=Gcaud1812.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1501bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:7018..8518+ (Gracilaria caudata M_176_S67 male)
ATGAGCTGCATCTACTCTCTCTTGGCTGTAACGGATGACGCTGGAGTGCA
TGGTGAGAACCTCGAAAGCGTGCAGCCACTGCCATGGCCTGGCATTGAGA
ACGTCAATCTGGGCTACGTTAAGGCGCTTGCGACGCGACTTCTCGCTGCC
ACTTTTCGCCCACCAGACTTGCTAAACCTGTTTGCCTTGCGTAAAGCCCA
CCTAATCAAGATTTTGCTTCATGCGAAAGAACGCTTCTCCAAAGAGCAAA
ACATTGTTGACATTATCGTGCCATACACTGGAAAAGTCCACGTTTTCGGT
GACACACATGGAGACTTTCATTCCTTGATGGAGGCAATCAATAACGCGGG
ATTGCCTTCGTCTGACAACATTTTCGTTTTTGCAGGCGATTGCGTCGACC
GCGGCTGCTGGGGTGTAGAGGTAGTAGCTCTCATTCTTGCTCTTAAACTC
TGTAATCCATGCTCTGTTTTCCTTGTGCGCGGAAATCATGAAACTACTGG
TTGCACCAAACGGTAAGTGACTTGATTATGCTTTCCACCTGCTGCTGTAG
GATTTCATCAAGTAACTTCATCTGACTCTTTGCTATAGCTATGGATTTGA
AAATGAAGTGCGCAGGAAGTATGATTCAAAGACTTTTGACATATTCTGCA
AAACCTTTAGAGAGCTTCCGGTTGCTGCTGTCCTAAGGTCATTACCTTTT
GAGAAAGTGTCCTCTGCAACAATGGTTCACCCTGCTGCAGGCAAGCAGCG
TCGTAAATCATCAAGAGGTAGGCGGAAAGAATCTCCACTGGTGGATGTAG
CTCCATTAGGTCAGGGCTGGCGTGCCCATCCAGTACCTGGAGAAAAGCGT
GTATTGGTTGTCCATGGCGGACTGTTCCGCGCATGGAAGGCACAAAAGCG
CTGCGTAATGACAATTGGAGATCTTGTTGACCTGTCGGAAGTAAACCGCC
GTGACGATGATCCCTATGAATGTCTTCTGGAAGATGTTATCTGGAGCGAC
CCGTCGGCAAAGAACGAGGTGTCATGTAACTTACTGAGAGGGGCTGGAAT
TCTATACGGCACTGGGGCCGTGCAATCTTTCTTTAAACGAAACGGACTGA
ATGGAATGATTCGGGCACATGAAGGACCTGATGTACGCGAACGCCGAGCC
GACATGAGGAGCATAGATGACGGTTATTCGATAGATATGGAATTAGCTGA
GGGCTTCGTTGCAACTGTTTTCACTGCAGCCGACTATCGTAAGTTTGGAA
CAATTGTAGTCTTCTTCATATTACAAGCACTAACGATTTTTGTTTGTCCG
TGCCGAATTGTAGCTCCTGATCGACCCCGGGGTAACAAAGGGGCGTTTGC
GACAATCTATGGAAAAGGAACTGAAAACAAACAGATCTTACCTGAGTTCA
CTTCTTTTACAAAACGCGACTCTCCTACCGAGATGCAGTTGTTCTACTCA
CAGGAGCAAAGCGAACAATCAGCCACTCCACGAACCAGTTTTTCAAAGTA
A
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Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:7018..8518+

>Gcaud1812.t1 ID=Gcaud1812.t1|Name=Gcaud1812.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1350bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:7018..8518+ (Gracilaria caudata M_176_S67 male)
ATGAGCTGCATCTACTCTCTCTTGGCTGTAACGGATGACGCTGGAGTGCA
TGGTGAGAACCTCGAAAGCGTGCAGCCACTGCCATGGCCTGGCATTGAGA
ACGTCAATCTGGGCTACGTTAAGGCGCTTGCGACGCGACTTCTCGCTGCC
ACTTTTCGCCCACCAGACTTGCTAAACCTGTTTGCCTTGCGTAAAGCCCA
CCTAATCAAGATTTTGCTTCATGCGAAAGAACGCTTCTCCAAAGAGCAAA
ACATTGTTGACATTATCGTGCCATACACTGGAAAAGTCCACGTTTTCGGT
GACACACATGGAGACTTTCATTCCTTGATGGAGGCAATCAATAACGCGGG
ATTGCCTTCGTCTGACAACATTTTCGTTTTTGCAGGCGATTGCGTCGACC
GCGGCTGCTGGGGTGTAGAGGTAGTAGCTCTCATTCTTGCTCTTAAACTC
TGTAATCCATGCTCTGTTTTCCTTGTGCGCGGAAATCATGAAACTACTGG
TTGCACCAAACGCTATGGATTTGAAAATGAAGTGCGCAGGAAGTATGATT
CAAAGACTTTTGACATATTCTGCAAAACCTTTAGAGAGCTTCCGGTTGCT
GCTGTCCTAAGGTCATTACCTTTTGAGAAAGTGTCCTCTGCAACAATGGT
TCACCCTGCTGCAGGCAAGCAGCGTCGTAAATCATCAAGAGGTAGGCGGA
AAGAATCTCCACTGGTGGATGTAGCTCCATTAGGTCAGGGCTGGCGTGCC
CATCCAGTACCTGGAGAAAAGCGTGTATTGGTTGTCCATGGCGGACTGTT
CCGCGCATGGAAGGCACAAAAGCGCTGCGTAATGACAATTGGAGATCTTG
TTGACCTGTCGGAAGTAAACCGCCGTGACGATGATCCCTATGAATGTCTT
CTGGAAGATGTTATCTGGAGCGACCCGTCGGCAAAGAACGAGGTGTCATG
TAACTTACTGAGAGGGGCTGGAATTCTATACGGCACTGGGGCCGTGCAAT
CTTTCTTTAAACGAAACGGACTGAATGGAATGATTCGGGCACATGAAGGA
CCTGATGTACGCGAACGCCGAGCCGACATGAGGAGCATAGATGACGGTTA
TTCGATAGATATGGAATTAGCTGAGGGCTTCGTTGCAACTGTTTTCACTG
CAGCCGACTATCCTCCTGATCGACCCCGGGGTAACAAAGGGGCGTTTGCG
ACAATCTATGGAAAAGGAACTGAAAACAAACAGATCTTACCTGAGTTCAC
TTCTTTTACAAAACGCGACTCTCCTACCGAGATGCAGTTGTTCTACTCAC
AGGAGCAAAGCGAACAATCAGCCACTCCACGAACCAGTTTTTCAAAGTAA
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