Gcaud181.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud181.t1
Unique NameGcaud181.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length701
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3675_length_3094_cov_3.173493contigNODE_3675_length_3094_cov_3.173493:810..2912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMC011CT
Preferred nameABCD3
PFAMsABC_membrane_2,ABC_tran
Max annot lvl2759|Eukaryota
KEGG koko:K05677
KEGG TC3.A.1.203.1
KEGG Pathwayko02010,ko04146,map02010,map04146
GOsGO:0000038,GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005779,GO:0005782,GO:0005829,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009653,GO:0009987,GO:0010033,GO:0010876,GO:0014070,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016053,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019395,GO:0019752,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0030587,GO:0031090,GO:0031224,GO:0031231,GO:0031288,GO:0031300,GO:0031301,GO:0031903,GO:0031907,GO:0031974,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032991,GO:0033036,GO:0034440,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042579,GO:0042623,GO:0042626,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043190,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043492,GO:0043621,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046394,GO:0046395,GO:0046942,GO:0046983,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0055114,GO:0070013,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0072329,GO:0072330,GO:0090702,GO:0097159,GO:0097367,GO:0098533,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:0099120,GO:1901265,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902495,GO:1904949,GO:1990351
Evalue1.86e-227
EggNOG OGsCOG4178@1|root,KOG0060@2759|Eukaryota
DescriptionATP-binding cassette sub-family D
COG categoryG
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud181Gcaud181Gracilaria caudata M_176_S67 malegeneNODE_3675_length_3094_cov_3.173493 810..2912 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud181.t1.start1Gcaud181.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_3675_length_3094_cov_3.173493 810..812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud181.t1.CDS1Gcaud181.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3675_length_3094_cov_3.173493 810..2912 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud181.t1.exon1Gcaud181.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3675_length_3094_cov_3.173493 810..2912 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud181.t1.stop1Gcaud181.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_3675_length_3094_cov_3.173493 2910..2912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud181.t1Gcaud181.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3675_length_3094_cov_3.173493 810..2912 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud181.t1 ID=Gcaud181.t1|Name=Gcaud181.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=701bp
MTNALSVLARQPRAALAAAAAVAATTGVLAHKWNAAVHSKRLDSAIYRPH
AHSALPQPSSSPPPARVDLRFVKTVASFLRVAIRAPPSQEASVLALVALL
LAARSWLDLWASSNGGHVVKAIVARDRRSFIRRAIVDIATMMFPMSFVNN
SLRYSIARLKLLMRRRLSLYLHDKYLANNTFYKLSNLDARIRNVDQMLTV
DIDRLCSSLVDLYCNISKPVFDIVLFSRRLARSLGPSGPLCMILYFAACS
VVLRAIQPPFGQLAAEEQRLEGEYRLHHSRLITHSEEIAFFGGAAREKLY
INHSFDNLVAHLNKLFAARWRNGFVDAVLVKYVATIVGYLVVSLPVFFTE
SPVFRLFSSANSARHNAANANAETTSASNIAGLYTRNSRLLLQLAGAIGR
LVLAGKEVTRLTGYTHRVSRLEHVLDELCRAGAVRRRFESSSDLLHDAHL
AHLMRPGKLVVADEDDRESSVRFEAVNIVSPDGTVLCEGRSLEMERGSHV
LTTGPNGCGKSSLFRVLAGLWPVYGGTIYRPARSRIFYVPQRPYLALGTL
RENVTYPMTWGEARARGATDELIMQLLERVHLGDVARRRDGLDAVKDWAE
VLSGGQKQRLAFARLLFHAPQYAILDEASSAVSIDVEKALYEAVKEAGIT
VISVSHRPSLWEFHDRVLAFDGGGGYEFREIGDEDLRAVDSGAVGSAAER
*
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spliced messenger RNA

>Gcaud181.t1 ID=Gcaud181.t1|Name=Gcaud181.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2103bp|location=Sequence derived from alignment at NODE_3675_length_3094_cov_3.173493:810..2912+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAACGCGCTCTCCGTGCTTGCGCGCCAGCCGCGCGCCGCTCTGGC
CGCCGCCGCCGCCGTCGCCGCCACCACCGGCGTGCTGGCGCACAAGTGGA
ACGCCGCCGTGCACAGCAAGCGTCTTGACTCTGCCATCTACCGCCCCCAC
GCGCACTCCGCGCTGCCGCAGCCGTCGTCGTCGCCGCCGCCGGCGCGCGT
CGACCTGCGCTTCGTCAAGACTGTCGCTTCCTTTCTGCGCGTCGCCATCC
GTGCGCCGCCGTCGCAGGAGGCGTCCGTGCTAGCGCTCGTGGCGCTGCTG
TTGGCCGCCCGCAGCTGGCTCGACCTGTGGGCTAGTTCCAATGGGGGACA
CGTCGTCAAGGCCATCGTTGCGCGTGACAGGCGCAGCTTCATCCGACGCG
CTATTGTGGACATTGCCACAATGATGTTCCCTATGTCGTTTGTCAACAAT
TCGTTGCGCTACTCTATAGCGCGCCTCAAGCTGCTCATGCGTCGTCGTCT
GTCGCTCTACTTGCATGACAAGTACCTGGCCAACAACACTTTCTATAAGC
TGTCCAACCTCGACGCCCGCATTCGCAACGTCGACCAGATGCTCACTGTC
GATATTGACCGCCTGTGTTCTTCGCTGGTCGACCTGTACTGCAACATATC
CAAGCCTGTCTTCGACATTGTTCTGTTCAGTCGCCGCCTGGCTCGCAGTC
TGGGCCCCTCGGGCCCGCTCTGCATGATCCTGTATTTTGCAGCGTGCTCC
GTCGTTCTGCGCGCCATTCAGCCGCCGTTTGGACAGCTCGCAGCCGAGGA
GCAGCGTCTGGAAGGCGAGTACCGTTTGCACCACTCACGCCTTATTACCC
ATTCTGAGGAAATTGCCTTCTTTGGGGGCGCCGCCCGGGAGAAATTGTAC
ATCAACCACTCGTTCGATAACCTGGTGGCTCACCTAAACAAGCTTTTCGC
CGCGCGCTGGCGCAACGGCTTCGTGGACGCCGTTCTGGTCAAGTACGTCG
CTACCATTGTCGGATACCTCGTGGTTTCACTGCCAGTGTTCTTCACAGAG
TCGCCAGTGTTCCGACTGTTCTCGTCCGCAAATAGCGCGCGTCACAACGC
CGCCAACGCGAACGCAGAGACCACATCAGCGTCCAACATTGCCGGGCTGT
ACACCAGGAACTCTCGCCTGTTGCTGCAGTTGGCAGGAGCCATTGGAAGG
CTGGTGCTCGCTGGAAAGGAGGTGACTCGTCTCACCGGATACACGCATCG
CGTCTCTCGGCTGGAGCACGTGCTCGACGAGCTGTGTCGTGCGGGAGCAG
TGCGACGACGGTTCGAATCGTCATCCGATTTGTTACATGATGCGCATTTG
GCGCATCTAATGCGGCCTGGGAAGCTGGTTGTGGCTGACGAAGACGACAG
GGAGAGTAGTGTACGCTTCGAGGCGGTGAACATTGTATCACCAGACGGCA
CGGTTTTGTGCGAAGGGCGTTCGTTGGAGATGGAGCGCGGCAGTCACGTG
CTCACGACTgggcccaatgggtgcggaaagagctcgttattccgcgttct
ggcgggattgtggccggtgtatggcggcacgatctaccgtccggctcgct
ctcgtatcttctacgtgccgcaacggccgtaTCTAGCGTTAGGGACGTTG
CGCGAGAACGTGACGTACCCGATGACTTGGGGCGAGGCCAGGGCACGTGG
CGCGACGGATGAGCTGATCATGCAGTTGTTGGAGAGAGTGCATCTGGGAG
ACGTGGCGCGACGACGGGATGGACTGGACGCGGTGAAGGACTGGGCGGAG
GTTTTGAGCGGCGGCCAGAAACAGCGGCTGGCGTTTGCGAGGCTGCTGTT
CCATGCGCCGCAGTACGCCATTCTTGACGAGGCGTCGTCGGCGGTTTCAA
TTGACGTGGAGAAGGCGCTGTACGAGGCGGTGAAGGAGGCGGGCATTACG
GTGATCAGCGTGAGCCACCGGCCGAGTCTTTGGGAATTCCATGACCGCGT
GCTGGCGTTTGACGGGGGTGGCGGGTATGAGTTCCGCGAGATCGGCGACG
AGGACCTGCGCGCGGTGGACTCTGGCGCGGTGGGGTCGGCGGCCGAAAGA
TAA
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protein sequence of Gcaud181.t1

>Gcaud181.t1 ID=Gcaud181.t1|Name=Gcaud181.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=701bp
MTNALSVLARQPRAALAAAAAVAATTGVLAHKWNAAVHSKRLDSAIYRPH
AHSALPQPSSSPPPARVDLRFVKTVASFLRVAIRAPPSQEASVLALVALL
LAARSWLDLWASSNGGHVVKAIVARDRRSFIRRAIVDIATMMFPMSFVNN
SLRYSIARLKLLMRRRLSLYLHDKYLANNTFYKLSNLDARIRNVDQMLTV
DIDRLCSSLVDLYCNISKPVFDIVLFSRRLARSLGPSGPLCMILYFAACS
VVLRAIQPPFGQLAAEEQRLEGEYRLHHSRLITHSEEIAFFGGAAREKLY
INHSFDNLVAHLNKLFAARWRNGFVDAVLVKYVATIVGYLVVSLPVFFTE
SPVFRLFSSANSARHNAANANAETTSASNIAGLYTRNSRLLLQLAGAIGR
LVLAGKEVTRLTGYTHRVSRLEHVLDELCRAGAVRRRFESSSDLLHDAHL
AHLMRPGKLVVADEDDRESSVRFEAVNIVSPDGTVLCEGRSLEMERGSHV
LTTGPNGCGKSSLFRVLAGLWPVYGGTIYRPARSRIFYVPQRPYLALGTL
RENVTYPMTWGEARARGATDELIMQLLERVHLGDVARRRDGLDAVKDWAE
VLSGGQKQRLAFARLLFHAPQYAILDEASSAVSIDVEKALYEAVKEAGIT
VISVSHRPSLWEFHDRVLAFDGGGGYEFREIGDEDLRAVDSGAVGSAAER
*
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mRNA from alignment at NODE_3675_length_3094_cov_3.173493:810..2912+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud181.t1 ID=Gcaud181.t1|Name=Gcaud181.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2103bp|location=Sequence derived from alignment at NODE_3675_length_3094_cov_3.173493:810..2912+ (Gracilaria caudata M_176_S67 male)
ATGACTAACGCGCTCTCCGTGCTTGCGCGCCAGCCGCGCGCCGCTCTGGC CGCCGCCGCCGCCGTCGCCGCCACCACCGGCGTGCTGGCGCACAAGTGGA ACGCCGCCGTGCACAGCAAGCGTCTTGACTCTGCCATCTACCGCCCCCAC GCGCACTCCGCGCTGCCGCAGCCGTCGTCGTCGCCGCCGCCGGCGCGCGT CGACCTGCGCTTCGTCAAGACTGTCGCTTCCTTTCTGCGCGTCGCCATCC GTGCGCCGCCGTCGCAGGAGGCGTCCGTGCTAGCGCTCGTGGCGCTGCTG TTGGCCGCCCGCAGCTGGCTCGACCTGTGGGCTAGTTCCAATGGGGGACA CGTCGTCAAGGCCATCGTTGCGCGTGACAGGCGCAGCTTCATCCGACGCG CTATTGTGGACATTGCCACAATGATGTTCCCTATGTCGTTTGTCAACAAT TCGTTGCGCTACTCTATAGCGCGCCTCAAGCTGCTCATGCGTCGTCGTCT GTCGCTCTACTTGCATGACAAGTACCTGGCCAACAACACTTTCTATAAGC TGTCCAACCTCGACGCCCGCATTCGCAACGTCGACCAGATGCTCACTGTC GATATTGACCGCCTGTGTTCTTCGCTGGTCGACCTGTACTGCAACATATC CAAGCCTGTCTTCGACATTGTTCTGTTCAGTCGCCGCCTGGCTCGCAGTC TGGGCCCCTCGGGCCCGCTCTGCATGATCCTGTATTTTGCAGCGTGCTCC GTCGTTCTGCGCGCCATTCAGCCGCCGTTTGGACAGCTCGCAGCCGAGGA GCAGCGTCTGGAAGGCGAGTACCGTTTGCACCACTCACGCCTTATTACCC ATTCTGAGGAAATTGCCTTCTTTGGGGGCGCCGCCCGGGAGAAATTGTAC ATCAACCACTCGTTCGATAACCTGGTGGCTCACCTAAACAAGCTTTTCGC CGCGCGCTGGCGCAACGGCTTCGTGGACGCCGTTCTGGTCAAGTACGTCG CTACCATTGTCGGATACCTCGTGGTTTCACTGCCAGTGTTCTTCACAGAG TCGCCAGTGTTCCGACTGTTCTCGTCCGCAAATAGCGCGCGTCACAACGC CGCCAACGCGAACGCAGAGACCACATCAGCGTCCAACATTGCCGGGCTGT ACACCAGGAACTCTCGCCTGTTGCTGCAGTTGGCAGGAGCCATTGGAAGG CTGGTGCTCGCTGGAAAGGAGGTGACTCGTCTCACCGGATACACGCATCG CGTCTCTCGGCTGGAGCACGTGCTCGACGAGCTGTGTCGTGCGGGAGCAG TGCGACGACGGTTCGAATCGTCATCCGATTTGTTACATGATGCGCATTTG GCGCATCTAATGCGGCCTGGGAAGCTGGTTGTGGCTGACGAAGACGACAG GGAGAGTAGTGTACGCTTCGAGGCGGTGAACATTGTATCACCAGACGGCA CGGTTTTGTGCGAAGGGCGTTCGTTGGAGATGGAGCGCGGCAGTCACGTG CTCACGACTgggcccaatgggtgcggaaagagctcgttattccgcgttct ggcgggattgtggccggtgtatggcggcacgatctaccgtccggctcgct ctcgtatcttctacgtgccgcaacggccgtaTCTAGCGTTAGGGACGTTG CGCGAGAACGTGACGTACCCGATGACTTGGGGCGAGGCCAGGGCACGTGG CGCGACGGATGAGCTGATCATGCAGTTGTTGGAGAGAGTGCATCTGGGAG ACGTGGCGCGACGACGGGATGGACTGGACGCGGTGAAGGACTGGGCGGAG GTTTTGAGCGGCGGCCAGAAACAGCGGCTGGCGTTTGCGAGGCTGCTGTT CCATGCGCCGCAGTACGCCATTCTTGACGAGGCGTCGTCGGCGGTTTCAA TTGACGTGGAGAAGGCGCTGTACGAGGCGGTGAAGGAGGCGGGCATTACG GTGATCAGCGTGAGCCACCGGCCGAGTCTTTGGGAATTCCATGACCGCGT GCTGGCGTTTGACGGGGGTGGCGGGTATGAGTTCCGCGAGATCGGCGACG AGGACCTGCGCGCGGTGGACTCTGGCGCGGTGGGGTCGGCGGCCGAAAGA TAA
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Coding sequence (CDS) from alignment at NODE_3675_length_3094_cov_3.173493:810..2912+

>Gcaud181.t1 ID=Gcaud181.t1|Name=Gcaud181.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2103bp|location=Sequence derived from alignment at NODE_3675_length_3094_cov_3.173493:810..2912+ (Gracilaria caudata M_176_S67 male)
ATGACTAACGCGCTCTCCGTGCTTGCGCGCCAGCCGCGCGCCGCTCTGGC
CGCCGCCGCCGCCGTCGCCGCCACCACCGGCGTGCTGGCGCACAAGTGGA
ACGCCGCCGTGCACAGCAAGCGTCTTGACTCTGCCATCTACCGCCCCCAC
GCGCACTCCGCGCTGCCGCAGCCGTCGTCGTCGCCGCCGCCGGCGCGCGT
CGACCTGCGCTTCGTCAAGACTGTCGCTTCCTTTCTGCGCGTCGCCATCC
GTGCGCCGCCGTCGCAGGAGGCGTCCGTGCTAGCGCTCGTGGCGCTGCTG
TTGGCCGCCCGCAGCTGGCTCGACCTGTGGGCTAGTTCCAATGGGGGACA
CGTCGTCAAGGCCATCGTTGCGCGTGACAGGCGCAGCTTCATCCGACGCG
CTATTGTGGACATTGCCACAATGATGTTCCCTATGTCGTTTGTCAACAAT
TCGTTGCGCTACTCTATAGCGCGCCTCAAGCTGCTCATGCGTCGTCGTCT
GTCGCTCTACTTGCATGACAAGTACCTGGCCAACAACACTTTCTATAAGC
TGTCCAACCTCGACGCCCGCATTCGCAACGTCGACCAGATGCTCACTGTC
GATATTGACCGCCTGTGTTCTTCGCTGGTCGACCTGTACTGCAACATATC
CAAGCCTGTCTTCGACATTGTTCTGTTCAGTCGCCGCCTGGCTCGCAGTC
TGGGCCCCTCGGGCCCGCTCTGCATGATCCTGTATTTTGCAGCGTGCTCC
GTCGTTCTGCGCGCCATTCAGCCGCCGTTTGGACAGCTCGCAGCCGAGGA
GCAGCGTCTGGAAGGCGAGTACCGTTTGCACCACTCACGCCTTATTACCC
ATTCTGAGGAAATTGCCTTCTTTGGGGGCGCCGCCCGGGAGAAATTGTAC
ATCAACCACTCGTTCGATAACCTGGTGGCTCACCTAAACAAGCTTTTCGC
CGCGCGCTGGCGCAACGGCTTCGTGGACGCCGTTCTGGTCAAGTACGTCG
CTACCATTGTCGGATACCTCGTGGTTTCACTGCCAGTGTTCTTCACAGAG
TCGCCAGTGTTCCGACTGTTCTCGTCCGCAAATAGCGCGCGTCACAACGC
CGCCAACGCGAACGCAGAGACCACATCAGCGTCCAACATTGCCGGGCTGT
ACACCAGGAACTCTCGCCTGTTGCTGCAGTTGGCAGGAGCCATTGGAAGG
CTGGTGCTCGCTGGAAAGGAGGTGACTCGTCTCACCGGATACACGCATCG
CGTCTCTCGGCTGGAGCACGTGCTCGACGAGCTGTGTCGTGCGGGAGCAG
TGCGACGACGGTTCGAATCGTCATCCGATTTGTTACATGATGCGCATTTG
GCGCATCTAATGCGGCCTGGGAAGCTGGTTGTGGCTGACGAAGACGACAG
GGAGAGTAGTGTACGCTTCGAGGCGGTGAACATTGTATCACCAGACGGCA
CGGTTTTGTGCGAAGGGCGTTCGTTGGAGATGGAGCGCGGCAGTCACGTG
CTCACGACTgggcccaatgggtgcggaaagagctcgttattccgcgttct
ggcgggattgtggccggtgtatggcggcacgatctaccgtccggctcgct
ctcgtatcttctacgtgccgcaacggccgtaTCTAGCGTTAGGGACGTTG
CGCGAGAACGTGACGTACCCGATGACTTGGGGCGAGGCCAGGGCACGTGG
CGCGACGGATGAGCTGATCATGCAGTTGTTGGAGAGAGTGCATCTGGGAG
ACGTGGCGCGACGACGGGATGGACTGGACGCGGTGAAGGACTGGGCGGAG
GTTTTGAGCGGCGGCCAGAAACAGCGGCTGGCGTTTGCGAGGCTGCTGTT
CCATGCGCCGCAGTACGCCATTCTTGACGAGGCGTCGTCGGCGGTTTCAA
TTGACGTGGAGAAGGCGCTGTACGAGGCGGTGAAGGAGGCGGGCATTACG
GTGATCAGCGTGAGCCACCGGCCGAGTCTTTGGGAATTCCATGACCGCGT
GCTGGCGTTTGACGGGGGTGGCGGGTATGAGTTCCGCGAGATCGGCGACG
AGGACCTGCGCGCGGTGGACTCTGGCGCGGTGGGGTCGGCGGCCGAAAGA
TAA
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