Gcaud1807.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1807.t1
Unique NameGcaud1807.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2042_length_7094_cov_4.903042contigNODE_2042_length_7094_cov_4.903042:4685..5429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1807Gcaud1807Gracilaria caudata M_176_S67 malegeneNODE_2042_length_7094_cov_4.903042 4685..5429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1807.t1Gcaud1807.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2042_length_7094_cov_4.903042 4685..5429 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1807.t1.stop1Gcaud1807.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2042_length_7094_cov_4.903042 4685..4687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1807.t1.CDS1Gcaud1807.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2042_length_7094_cov_4.903042 4685..4775 -
Gcaud1807.t1.CDS2Gcaud1807.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2042_length_7094_cov_4.903042 4863..5181 -
Gcaud1807.t1.CDS3Gcaud1807.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2042_length_7094_cov_4.903042 5271..5287 -
Gcaud1807.t1.CDS4Gcaud1807.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_2042_length_7094_cov_4.903042 5374..5429 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1807.t1.exon1Gcaud1807.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2042_length_7094_cov_4.903042 4685..4775 -
Gcaud1807.t1.exon2Gcaud1807.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2042_length_7094_cov_4.903042 4863..5181 -
Gcaud1807.t1.exon3Gcaud1807.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2042_length_7094_cov_4.903042 5271..5287 -
Gcaud1807.t1.exon4Gcaud1807.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_2042_length_7094_cov_4.903042 5374..5429 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1807.t1.intron1Gcaud1807.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2042_length_7094_cov_4.903042 4776..4862 -
Gcaud1807.t1.intron2Gcaud1807.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2042_length_7094_cov_4.903042 5182..5270 -
Gcaud1807.t1.intron3Gcaud1807.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_2042_length_7094_cov_4.903042 5288..5373 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1807.t1.start1Gcaud1807.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2042_length_7094_cov_4.903042 5427..5429 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1807.t1 ID=Gcaud1807.t1|Name=Gcaud1807.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=161bp
MGSHGSSSSRLFRCPECGGSFKDAKTRSRHINSAHAGGSGTNRRKYQCGH
CCFTFEKKRSLQRHERNVHGNSNNDSVPSDPVPSNSLSQSRARSPRNDDS
GGPQVLTRSSDLSRSHSRQVSSGKMQVLPPCLEGLRSHERSIHKRNENKT
RPNQHHVDHD*
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spliced messenger RNA

>Gcaud1807.t1 ID=Gcaud1807.t1|Name=Gcaud1807.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp|location=Sequence derived from alignment at NODE_2042_length_7094_cov_4.903042:4685..5429- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAGCCACGGTTCGAGTTCCAGTCGCCTCTTTCGCTGCCCGGAATG
CGGCGGGTCATTTAAAGATGCTAAAACGCGTTCCAGGCATATAAACTCAG
CTCATGCCGGAGGATCTGGGACGAATCGAAGAAAATACCAGTGCGGACAC
TGTTGTTTTACTTTTGAGAAGAAACGAAGCCTGCAGAGACATGAACGAAA
TGTGCACGGAAACAGTAATAACGATTCCGTACCAAGCGATCCCGTACCAA
GCAATTCCTTGTCGCAATCAAGGGCAAGATCACCGAGAAATGACGATTCT
GGTGGGCCACAAGTGCTTACAAGAAGTTCCGATCTGAGTCGGTCACACAG
TCGTCAGGTATCGTCGGGCAAGATGCAAGTTCTACCGCCGTGTCTTGAAG
GCCTGCGTTCACATGAACGATCCATTCACAAAAGGAATGAGAATAAGACT
CGTCCAAATCAACATCATGTTGATCATGATTGA
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protein sequence of Gcaud1807.t1

>Gcaud1807.t1 ID=Gcaud1807.t1|Name=Gcaud1807.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=161bp
MGSHGSSSSRLFRCPECGGSFKDAKTRSRHINSAHAGGSGTNRRKYQCGH
CCFTFEKKRSLQRHERNVHGNSNNDSVPSDPVPSNSLSQSRARSPRNDDS
GGPQVLTRSSDLSRSHSRQVSSGKMQVLPPCLEGLRSHERSIHKRNENKT
RPNQHHVDHD*
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mRNA from alignment at NODE_2042_length_7094_cov_4.903042:4685..5429-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1807.t1 ID=Gcaud1807.t1|Name=Gcaud1807.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=745bp|location=Sequence derived from alignment at NODE_2042_length_7094_cov_4.903042:4685..5429- (Gracilaria caudata M_176_S67 male)
ATGGGAAGCCACGGTTCGAGTTCCAGTCGCCTCTTTCGCTGCCCGGAATG
CGGCGGGTAAGTTGTTTTTGTAGCTTCTTTCTCTTCGTGTTCTCCTTTTC
TCTAACTGCTTTTTGTTTGTTGACTGCGAATTGTTTGGCCAGGTCATTTA
AAGATGCTAGTGCGTTAGCAAACAAGTGCGAGATGTTTGGTGCTTAGTTA
TTTTTGCTTCTTGTTGCTGACCAATGACTCAATCGTTCTCATTTCCAGAA
ACGCGTTCCAGGCATATAAACTCAGCTCATGCCGGAGGATCTGGGACGAA
TCGAAGAAAATACCAGTGCGGACACTGTTGTTTTACTTTTGAGAAGAAAC
GAAGCCTGCAGAGACATGAACGAAATGTGCACGGAAACAGTAATAACGAT
TCCGTACCAAGCGATCCCGTACCAAGCAATTCCTTGTCGCAATCAAGGGC
AAGATCACCGAGAAATGACGATTCTGGTGGGCCACAAGTGCTTACAAGAA
GTTCCGATCTGAGTCGGTCACACAGTCGTCAGGTATCGTCGGGCAAGATG
CAAGTTCTACCGCCGTGGTACGATTCTCGACGTGAACATTCAGGGGCGAC
TGGATCGAGTAGTCGCATACATATTTGTCCATCTTGCTCATGCTTCTTCA
ATAGTCTTGAAGGCCTGCGTTCACATGAACGATCCATTCACAAAAGGAAT
GAGAATAAGACTCGTCCAAATCAACATCATGTTGATCATGATTGA
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Coding sequence (CDS) from alignment at NODE_2042_length_7094_cov_4.903042:4685..5429-

>Gcaud1807.t1 ID=Gcaud1807.t1|Name=Gcaud1807.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=483bp|location=Sequence derived from alignment at NODE_2042_length_7094_cov_4.903042:4685..5429- (Gracilaria caudata M_176_S67 male)
ATGGGAAGCCACGGTTCGAGTTCCAGTCGCCTCTTTCGCTGCCCGGAATG
CGGCGGGTCATTTAAAGATGCTAAAACGCGTTCCAGGCATATAAACTCAG
CTCATGCCGGAGGATCTGGGACGAATCGAAGAAAATACCAGTGCGGACAC
TGTTGTTTTACTTTTGAGAAGAAACGAAGCCTGCAGAGACATGAACGAAA
TGTGCACGGAAACAGTAATAACGATTCCGTACCAAGCGATCCCGTACCAA
GCAATTCCTTGTCGCAATCAAGGGCAAGATCACCGAGAAATGACGATTCT
GGTGGGCCACAAGTGCTTACAAGAAGTTCCGATCTGAGTCGGTCACACAG
TCGTCAGGTATCGTCGGGCAAGATGCAAGTTCTACCGCCGTGTCTTGAAG
GCCTGCGTTCACATGAACGATCCATTCACAAAAGGAATGAGAATAAGACT
CGTCCAAATCAACATCATGTTGATCATGATTGA
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