Gcaud1793.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1793.t1
Unique NameGcaud1793.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_472_length_24489_cov_3.453562contigNODE_472_length_24489_cov_3.453562:20521..21033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.A0A096P9B8
PFAMsUAA
Max annot lvl3041|Chlorophyta
KEGG koko:K15276
KEGG TC2.A.7.11.2,2.A.7.11.3
Evalue3.31e-43
EggNOG OGsCOG0697@1|root,KOG1581@2759|Eukaryota,37JV3@33090|Viridiplantae,34HAW@3041|Chlorophyta
Descriptiontransporter
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1793Gcaud1793Gracilaria caudata M_176_S67 malegeneNODE_472_length_24489_cov_3.453562 20521..21639 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1793.t1.stop1Gcaud1793.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_472_length_24489_cov_3.453562 20521..20523 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1793.t1.CDS1Gcaud1793.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_472_length_24489_cov_3.453562 20521..21033 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1793.t1.exon1Gcaud1793.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_472_length_24489_cov_3.453562 20521..21033 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1793.t1.start1Gcaud1793.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_472_length_24489_cov_3.453562 21031..21033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1793.t1Gcaud1793.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_472_length_24489_cov_3.453562 20521..21033 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1793.t1 ID=Gcaud1793.t1|Name=Gcaud1793.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=171bp
MISSGNVSAQHSSSAEADTPFGFVLMLFYLLFDAITSTHQESLFEKYHMS
VYNQMLYINLSSACISIVALTARGGLWECARFITAFPSILPDICTLSLSA
VAGQFAITYTIQAFGALLYAGVMTTRQFCSVLASDIIFKHGLTVVQWTGA
MMVFAALFFKLWRKATRSSE*
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spliced messenger RNA

>Gcaud1793.t1 ID=Gcaud1793.t1|Name=Gcaud1793.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:20521..21033- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTCGTCAGGCAACGTCTCCGCACAACACTCATCGAGCGCAGAGGC
CGATACGCCGTTTGGGTTTGTTCTCATGTTGTTCTACCTGCTCTTCGACG
CCATAACATCAACTCATCAAGAATCCCTTTTCGAGAAGTATCACATGTCC
GTGTACAATCAGATGCTTTACATCAATCTTTCGTCTGCGTGTATTTCGAT
CGTAGCGCTAACTGCGAGAGGCGGATTATGGGAATGCGCGCGCTTCATAA
CTGCGTTTCCCTCCATCCTGCCGGACATATGCACGTTGTCATTGTCGGCG
GTGGCGGGACAGTTTGCCATCACGTACACCATTCAGGCGTTTGGCGCGTT
GCTCTACGCGGGAGTGATGACGACAAGACAATTTTGCTCCGTGTTGGCGA
GTGATATTATCTTCAAGCACGGCCTCACCGTGGTGCAATGGACAGGCGCC
ATGATGGTTTTTGCGGCGTTGTTCTTCAAACTGTGGAGAAAGGCCACGCG
CAGCTCGGAGTGA
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protein sequence of Gcaud1793.t1

>Gcaud1793.t1 ID=Gcaud1793.t1|Name=Gcaud1793.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=171bp
MISSGNVSAQHSSSAEADTPFGFVLMLFYLLFDAITSTHQESLFEKYHMS
VYNQMLYINLSSACISIVALTARGGLWECARFITAFPSILPDICTLSLSA
VAGQFAITYTIQAFGALLYAGVMTTRQFCSVLASDIIFKHGLTVVQWTGA
MMVFAALFFKLWRKATRSSE*
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mRNA from alignment at NODE_472_length_24489_cov_3.453562:20521..21033-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1793.t1 ID=Gcaud1793.t1|Name=Gcaud1793.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:20521..21033- (Gracilaria caudata M_176_S67 male)
ATGATTTCGTCAGGCAACGTCTCCGCACAACACTCATCGAGCGCAGAGGC
CGATACGCCGTTTGGGTTTGTTCTCATGTTGTTCTACCTGCTCTTCGACG
CCATAACATCAACTCATCAAGAATCCCTTTTCGAGAAGTATCACATGTCC
GTGTACAATCAGATGCTTTACATCAATCTTTCGTCTGCGTGTATTTCGAT
CGTAGCGCTAACTGCGAGAGGCGGATTATGGGAATGCGCGCGCTTCATAA
CTGCGTTTCCCTCCATCCTGCCGGACATATGCACGTTGTCATTGTCGGCG
GTGGCGGGACAGTTTGCCATCACGTACACCATTCAGGCGTTTGGCGCGTT
GCTCTACGCGGGAGTGATGACGACAAGACAATTTTGCTCCGTGTTGGCGA
GTGATATTATCTTCAAGCACGGCCTCACCGTGGTGCAATGGACAGGCGCC
ATGATGGTTTTTGCGGCGTTGTTCTTCAAACTGTGGAGAAAGGCCACGCG
CAGCTCGGAGTGA
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Coding sequence (CDS) from alignment at NODE_472_length_24489_cov_3.453562:20521..21033-

>Gcaud1793.t1 ID=Gcaud1793.t1|Name=Gcaud1793.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=513bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:20521..21033- (Gracilaria caudata M_176_S67 male)
ATGATTTCGTCAGGCAACGTCTCCGCACAACACTCATCGAGCGCAGAGGC
CGATACGCCGTTTGGGTTTGTTCTCATGTTGTTCTACCTGCTCTTCGACG
CCATAACATCAACTCATCAAGAATCCCTTTTCGAGAAGTATCACATGTCC
GTGTACAATCAGATGCTTTACATCAATCTTTCGTCTGCGTGTATTTCGAT
CGTAGCGCTAACTGCGAGAGGCGGATTATGGGAATGCGCGCGCTTCATAA
CTGCGTTTCCCTCCATCCTGCCGGACATATGCACGTTGTCATTGTCGGCG
GTGGCGGGACAGTTTGCCATCACGTACACCATTCAGGCGTTTGGCGCGTT
GCTCTACGCGGGAGTGATGACGACAAGACAATTTTGCTCCGTGTTGGCGA
GTGATATTATCTTCAAGCACGGCCTCACCGTGGTGCAATGGACAGGCGCC
ATGATGGTTTTTGCGGCGTTGTTCTTCAAACTGTGGAGAAAGGCCACGCG
CAGCTCGGAGTGA
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