Gcaud1784.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1784.t1
Unique NameGcaud1784.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_338_length_29361_cov_4.567031contigNODE_338_length_29361_cov_4.567031:24191..25270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002673406.1
Preferred nameRFC4
PFAMsAAA,Rep_fac_C
Max annot lvl2759|Eukaryota
KEGG koko:K10755,ko:K14015
KEGG Pathwayko03030,ko03420,ko03430,ko04141,map03030,map03420,map03430,map04141
KEGG ModuleM00289,M00295,M00400,M00403
GOsGO:0000075,GO:0000076,GO:0000166,GO:0000228,GO:0000278,GO:0000723,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010389,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010948,GO:0010972,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019899,GO:0019941,GO:0019985,GO:0022402,GO:0022616,GO:0030163,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031389,GO:0031390,GO:0031391,GO:0031570,GO:0031625,GO:0031974,GO:0031981,GO:0032182,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033260,GO:0033314,GO:0033554,GO:0033683,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0036094,GO:0042276,GO:0042592,GO:0042623,GO:0042769,GO:0043085,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044774,GO:0044786,GO:0044818,GO:0045786,GO:0045930,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051603,GO:0051606,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061860,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070914,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090618,GO:0097159,GO:0098813,GO:0104004,GO:1900262,GO:1900264,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902296,GO:1902319,GO:1902494,GO:1902749,GO:1902750,GO:1902969,GO:1902983,GO:1903047,GO:1903460,GO:1904949,GO:2000112,GO:2000278,GO:2000573
Evalue9.69e-101
EggNOG OGsCOG0470@1|root,KOG0989@2759|Eukaryota
DescriptionDNA replication
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1784Gcaud1784Gracilaria caudata M_176_S67 malegeneNODE_338_length_29361_cov_4.567031 24191..25270 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1784.t1.stop1Gcaud1784.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_338_length_29361_cov_4.567031 24191..24193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1784.t1.CDS1Gcaud1784.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_338_length_29361_cov_4.567031 24191..25270 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1784.t1.exon1Gcaud1784.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_338_length_29361_cov_4.567031 24191..25270 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1784.t1.start1Gcaud1784.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_338_length_29361_cov_4.567031 25268..25270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1784.t1Gcaud1784.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_338_length_29361_cov_4.567031 24191..25270 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1784.t1 ID=Gcaud1784.t1|Name=Gcaud1784.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=360bp
MKDGAQLWVEKYRPRAVSEVAHQEEVVATLQKAVKEPAGRGDLPHLLLYG
PPGTGKTSTALALCRDLFGPQNYRSRVLELNASDERGIKVVRDKIKVFAQ
LAVSSNVNTKRSDGKTYPCPPYKVIILDEADAITTDAQTALRRTMEAHSR
VTRFIIICNYISRIIGPLASRCAKFRFNSLPLEAMKAYLAKIATAEHVKV
SDETLESLIEASEGDLRKAINTMQTAQRIQSDAELDIDSISAAACLVPPS
VVDTFDSSITAKGASNASVRKAVDEILVEGYSSGQLLTQYADRLIGRRSS
SGVGTLSDLQKAAISLVIADAEKALIDGCDEKVQLYDIASRISRIANTAD
GDVTALRKA*
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spliced messenger RNA

>Gcaud1784.t1 ID=Gcaud1784.t1|Name=Gcaud1784.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:24191..25270- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGATGGTGCTCAGCTCTGGGTCGAAAAATACCGACCGCGTGCCGT
TTCAGAAGTAGCTCATCAAGAAGAAGTGGTGGCCACTCTACAAAAGGCCG
TAAAGGAACCCGCTGGAAGGGGTGATCTTCCACATCTTTTGCTTTACGGG
CCGCCGGGCACTGGGAAAACTTCCACAGCTTTGGCTCTCTGCAGGGATTT
GTTTGGGCCCCAAAACTATCGTTCAAGAGTACTGGAGCTTAACGCGTCAG
ACGAACGTGGGATAAAAGTGGTGCGGGACAAGATCAAGGTCTTCGCTCAG
TTGGCAGTATCTTCAAATGTAAATACGAAGAGGTCAGATGGCAAGACTTA
TCCGTGCCCACCATACAAGGTAATCATTTTGGATGAGGCTGATGCAATTA
CAACCGATGCGCAGACAGCCCTTCGAAGAACTATGGAAGCACATTCAAGA
GTAACCAGGTTCATCATCATATGTAACTATATTAGTCGCATTATTGGTCC
ACTTGCCTCAAGATGTGCAAAGTTTCGGTTCAACTCCTTACCCCTCGAGG
CAATGAAAGCCTATTTGGCCAAAATCGCTACTGCAGAACATGTCAAAGTG
TCGGATGAAACTTTGGAATCGTTAATAGAAGCGTCAGAGGGAGATTTGCG
CAAGGCGATTAACACAATGCAAACCGCGCAACGAATACAATCTGATGCTG
AGCTTGACATCGACAGCATCTCCGCTGCTGCATGTCTGGTTCCCCCTTCT
GTTGTGGACACCTTTGATAGCTCTATAACTGCAAAAGGGGCATCAAACGC
ATCTGTACGAAAAGCAGTAGACGAAATATTGGTTGAGGGATATTCTTCCG
GTCAGCTATTGACGCAGTATGCAGACCGGCTCATTGGAAGACGATCAAGT
TCTGGCGTTGGAACCCTGAGTGATTTGCAGAAAGCAGCAATATCGCTCGT
TATAGCAGACGCAGAAAAAGCCCTCATCGACGGTTGTGACGAGAAAGTCC
AGCTTTACGACATTGCTTCTCGGATTTCTCGAATAGCGAATACTGCAGAC
GGTGATGTAACCGCTCTGCGGAAAGCGTGA
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protein sequence of Gcaud1784.t1

>Gcaud1784.t1 ID=Gcaud1784.t1|Name=Gcaud1784.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=360bp
MKDGAQLWVEKYRPRAVSEVAHQEEVVATLQKAVKEPAGRGDLPHLLLYG
PPGTGKTSTALALCRDLFGPQNYRSRVLELNASDERGIKVVRDKIKVFAQ
LAVSSNVNTKRSDGKTYPCPPYKVIILDEADAITTDAQTALRRTMEAHSR
VTRFIIICNYISRIIGPLASRCAKFRFNSLPLEAMKAYLAKIATAEHVKV
SDETLESLIEASEGDLRKAINTMQTAQRIQSDAELDIDSISAAACLVPPS
VVDTFDSSITAKGASNASVRKAVDEILVEGYSSGQLLTQYADRLIGRRSS
SGVGTLSDLQKAAISLVIADAEKALIDGCDEKVQLYDIASRISRIANTAD
GDVTALRKA*
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mRNA from alignment at NODE_338_length_29361_cov_4.567031:24191..25270-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1784.t1 ID=Gcaud1784.t1|Name=Gcaud1784.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:24191..25270- (Gracilaria caudata M_176_S67 male)
ATGAAGGATGGTGCTCAGCTCTGGGTCGAAAAATACCGACCGCGTGCCGT
TTCAGAAGTAGCTCATCAAGAAGAAGTGGTGGCCACTCTACAAAAGGCCG
TAAAGGAACCCGCTGGAAGGGGTGATCTTCCACATCTTTTGCTTTACGGG
CCGCCGGGCACTGGGAAAACTTCCACAGCTTTGGCTCTCTGCAGGGATTT
GTTTGGGCCCCAAAACTATCGTTCAAGAGTACTGGAGCTTAACGCGTCAG
ACGAACGTGGGATAAAAGTGGTGCGGGACAAGATCAAGGTCTTCGCTCAG
TTGGCAGTATCTTCAAATGTAAATACGAAGAGGTCAGATGGCAAGACTTA
TCCGTGCCCACCATACAAGGTAATCATTTTGGATGAGGCTGATGCAATTA
CAACCGATGCGCAGACAGCCCTTCGAAGAACTATGGAAGCACATTCAAGA
GTAACCAGGTTCATCATCATATGTAACTATATTAGTCGCATTATTGGTCC
ACTTGCCTCAAGATGTGCAAAGTTTCGGTTCAACTCCTTACCCCTCGAGG
CAATGAAAGCCTATTTGGCCAAAATCGCTACTGCAGAACATGTCAAAGTG
TCGGATGAAACTTTGGAATCGTTAATAGAAGCGTCAGAGGGAGATTTGCG
CAAGGCGATTAACACAATGCAAACCGCGCAACGAATACAATCTGATGCTG
AGCTTGACATCGACAGCATCTCCGCTGCTGCATGTCTGGTTCCCCCTTCT
GTTGTGGACACCTTTGATAGCTCTATAACTGCAAAAGGGGCATCAAACGC
ATCTGTACGAAAAGCAGTAGACGAAATATTGGTTGAGGGATATTCTTCCG
GTCAGCTATTGACGCAGTATGCAGACCGGCTCATTGGAAGACGATCAAGT
TCTGGCGTTGGAACCCTGAGTGATTTGCAGAAAGCAGCAATATCGCTCGT
TATAGCAGACGCAGAAAAAGCCCTCATCGACGGTTGTGACGAGAAAGTCC
AGCTTTACGACATTGCTTCTCGGATTTCTCGAATAGCGAATACTGCAGAC
GGTGATGTAACCGCTCTGCGGAAAGCGTGA
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Coding sequence (CDS) from alignment at NODE_338_length_29361_cov_4.567031:24191..25270-

>Gcaud1784.t1 ID=Gcaud1784.t1|Name=Gcaud1784.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1080bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:24191..25270- (Gracilaria caudata M_176_S67 male)
ATGAAGGATGGTGCTCAGCTCTGGGTCGAAAAATACCGACCGCGTGCCGT
TTCAGAAGTAGCTCATCAAGAAGAAGTGGTGGCCACTCTACAAAAGGCCG
TAAAGGAACCCGCTGGAAGGGGTGATCTTCCACATCTTTTGCTTTACGGG
CCGCCGGGCACTGGGAAAACTTCCACAGCTTTGGCTCTCTGCAGGGATTT
GTTTGGGCCCCAAAACTATCGTTCAAGAGTACTGGAGCTTAACGCGTCAG
ACGAACGTGGGATAAAAGTGGTGCGGGACAAGATCAAGGTCTTCGCTCAG
TTGGCAGTATCTTCAAATGTAAATACGAAGAGGTCAGATGGCAAGACTTA
TCCGTGCCCACCATACAAGGTAATCATTTTGGATGAGGCTGATGCAATTA
CAACCGATGCGCAGACAGCCCTTCGAAGAACTATGGAAGCACATTCAAGA
GTAACCAGGTTCATCATCATATGTAACTATATTAGTCGCATTATTGGTCC
ACTTGCCTCAAGATGTGCAAAGTTTCGGTTCAACTCCTTACCCCTCGAGG
CAATGAAAGCCTATTTGGCCAAAATCGCTACTGCAGAACATGTCAAAGTG
TCGGATGAAACTTTGGAATCGTTAATAGAAGCGTCAGAGGGAGATTTGCG
CAAGGCGATTAACACAATGCAAACCGCGCAACGAATACAATCTGATGCTG
AGCTTGACATCGACAGCATCTCCGCTGCTGCATGTCTGGTTCCCCCTTCT
GTTGTGGACACCTTTGATAGCTCTATAACTGCAAAAGGGGCATCAAACGC
ATCTGTACGAAAAGCAGTAGACGAAATATTGGTTGAGGGATATTCTTCCG
GTCAGCTATTGACGCAGTATGCAGACCGGCTCATTGGAAGACGATCAAGT
TCTGGCGTTGGAACCCTGAGTGATTTGCAGAAAGCAGCAATATCGCTCGT
TATAGCAGACGCAGAAAAAGCCCTCATCGACGGTTGTGACGAGAAAGTCC
AGCTTTACGACATTGCTTCTCGGATTTCTCGAATAGCGAATACTGCAGAC
GGTGATGTAACCGCTCTGCGGAAAGCGTGA
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