Gcaud1783.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1783.t1
Unique Name	Gcaud1783.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	396

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_338_length_29361_cov_4.567031	contig	NODE_338_length_29361_cov_4.567031:22446..23633 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	81985.XP_006284985.1
PFAMs	SLAC1
Max annot lvl	35493\|Streptophyta
GOs	GO:0001101,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005253,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006873,GO:0006950,GO:0006970,GO:0008150,GO:0008308,GO:0008509,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009987,GO:0010035,GO:0015075,GO:0015103,GO:0015267,GO:0015318,GO:0015698,GO:0016020,GO:0019725,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0034220,GO:0042221,GO:0042592,GO:0044464,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071944,GO:0098656,GO:1901700
Evalue	2.42e-17
EggNOG OGs	28IA4@1\|root,2QQKN@2759\|Eukaryota,37JZS@33090\|Viridiplantae,3G826@35493\|Streptophyta,3HX9Y@3699\|Brassicales
Description	Voltage-dependent anion channel
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1783	Gcaud1783	Gracilaria caudata M_176_S67 male	gene	NODE_338_length_29361_cov_4.567031 22446..23633 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1783.t1.start1	Gcaud1783.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_338_length_29361_cov_4.567031 22446..22448 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1783.t1.CDS1	Gcaud1783.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_338_length_29361_cov_4.567031 22446..23633 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1783.t1.exon1	Gcaud1783.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_338_length_29361_cov_4.567031 22446..23633 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1783.t1.stop1	Gcaud1783.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_338_length_29361_cov_4.567031 23631..23633 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1783.t1	Gcaud1783.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_338_length_29361_cov_4.567031 22446..23633 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_338_length_29361_cov_4.567031:22446..23633+
coding sequence from alignment at NODE_338_length_29361_cov_4.567031:22446..23633+

mRNA sequence

>Gcaud1783.t1 ID=Gcaud1783.t1|Name=Gcaud1783.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=396bp
MHSSALSSDMDPVSAQPSRWRQKVVQFDMSHNSIALAFYAVTATLRLATR
VDLSPVVPDIAFGISVVVVFICATLTLTRSYIFPAAFRQDFNNPRLVNFF
YLPPIISALALTSMPARFRVYIPMVIVFYIITLYQTILSLYLYGNWLYKS
SLSDTIYPLIFMQTVGFFLLSIVASQLVLPEVSFFLLTTALLFWLIIFVT
LFQHSHVTLAKANETPSPIFFLFLAPTAQATIAALFLLAAREVPEDFPSR
TLLPTEPLPWSIGAELAHYVNLFLYLLMLRLMPLWLNRPFSVVWWAYVFP
LGGATGAILLRYEKVRGTFWLVMTVASGSLTAAAMIIVTILTLRGILNGT
FPNNEKNRKAYDMFWKGRSTMSRMKVPPGVSGDSLGETTGSAENV*

spliced messenger RNA

>Gcaud1783.t1 ID=Gcaud1783.t1|Name=Gcaud1783.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:22446..23633+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCGTCCGCTCTGTCCTCCGACATGGATCCCGTCTCGGCGCAGCC
GTCGCGTTGGCGACAGAAGGTCGTGCAGTTCGACATGTCGCACAACTCTA
TTGCGCTTGCTTTCTATGCGGTCACCGCAACGTTGCGTCTTGCCACTCGA
GTCGATTTGAGTCCGGTTGTACCCGATATTGCATTCGGTATATCCGTGGT
CGTTGTTTTCATATGTGCAACTCTGACGCTGACACGATCCTACATCTTTC
CTGCTGCATTCCGTCAAGACTTCAACAATCCTCGTCTTGTCAACTTCTTC
TATTTGCCACCCATCATCAGTGCGTTGGCACTGACGTCCATGCCGGCTAG
ATTTCGCGTATACATTCCAATGGTCATTGTGTTCTACATAATCACTTTGT
ATCAAACGATTCTTTCGCTCTATCTCTACGGAAATTGGTTGTATAAATCG
TCGCTTTCGGACACTATCTACCCGCTAATCTTCATGCAAACTGTCGGCTT
TTTCCTTCTTTCCATCGTCGCATCTCAACTCGTACTACCGGAAGTGTCAT
TCTTCCTTCTCACTACAGCGCTCCTCTTCTGGCTTATAATTTTCGTAACC
CTCTTTCAACACTCCCACGTCACACTTGCCAAGGCAAACGAAACGCCTTC
GCCGATCTTCTTTCTGTTTCTGGCTCCGACCGCGCAGGCGACCATCGCAG
CTCTGTTCCTGCTCGCCGCAAGAGAGGTACCGGAGGACTTCCCGTCACGT
ACGCTACTACCTACAGAACCACTACCGTGGTCTATTGGTGCCGAACTGGC
GCACTACGTCAATCTATTCCTGTATCTACTCATGCTCCGTTTGATGCCAT
TGTGGCTCAACCGCCCATTCTCAGTTGTTTGGTGGGCGTACGTCTTCCCC
TTAGGGGGTGCCACTGGAGCTATCTTGCTACGCTACGAGAAGGTGCGCGG
TACGTTTTGGCTTGTAATGACAGTTGCCTCCGGTTCCCTTACTGCAGCAG
CAATGATAATCGTCACCATTCTCACGCTGCGGGGGATATTGAATGGCACG
TTTCCGAACAACGAGAAAAACAGGAAGGCTTACGACATGTTTTGGAAGGG
AAGAAGCACCATGTCACGAATGAAGGTACCCCCTGGTGTTTCTGGAGATA
GCCTCGGGGAAACAACCGGAAGTGCCGAAAATGTTTGA

protein sequence of Gcaud1783.t1

>Gcaud1783.t1 ID=Gcaud1783.t1|Name=Gcaud1783.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=396bp
MHSSALSSDMDPVSAQPSRWRQKVVQFDMSHNSIALAFYAVTATLRLATR
VDLSPVVPDIAFGISVVVVFICATLTLTRSYIFPAAFRQDFNNPRLVNFF
YLPPIISALALTSMPARFRVYIPMVIVFYIITLYQTILSLYLYGNWLYKS
SLSDTIYPLIFMQTVGFFLLSIVASQLVLPEVSFFLLTTALLFWLIIFVT
LFQHSHVTLAKANETPSPIFFLFLAPTAQATIAALFLLAAREVPEDFPSR
TLLPTEPLPWSIGAELAHYVNLFLYLLMLRLMPLWLNRPFSVVWWAYVFP
LGGATGAILLRYEKVRGTFWLVMTVASGSLTAAAMIIVTILTLRGILNGT
FPNNEKNRKAYDMFWKGRSTMSRMKVPPGVSGDSLGETTGSAENV*

mRNA from alignment at NODE_338_length_29361_cov_4.567031:22446..23633+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1783.t1 ID=Gcaud1783.t1|Name=Gcaud1783.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:22446..23633+ (Gracilaria caudata M_176_S67 male)
ATGCATTCGTCCGCTCTGTCCTCCGACATGGATCCCGTCTCGGCGCAGCC
GTCGCGTTGGCGACAGAAGGTCGTGCAGTTCGACATGTCGCACAACTCTA
TTGCGCTTGCTTTCTATGCGGTCACCGCAACGTTGCGTCTTGCCACTCGA
GTCGATTTGAGTCCGGTTGTACCCGATATTGCATTCGGTATATCCGTGGT
CGTTGTTTTCATATGTGCAACTCTGACGCTGACACGATCCTACATCTTTC
CTGCTGCATTCCGTCAAGACTTCAACAATCCTCGTCTTGTCAACTTCTTC
TATTTGCCACCCATCATCAGTGCGTTGGCACTGACGTCCATGCCGGCTAG
ATTTCGCGTATACATTCCAATGGTCATTGTGTTCTACATAATCACTTTGT
ATCAAACGATTCTTTCGCTCTATCTCTACGGAAATTGGTTGTATAAATCG
TCGCTTTCGGACACTATCTACCCGCTAATCTTCATGCAAACTGTCGGCTT
TTTCCTTCTTTCCATCGTCGCATCTCAACTCGTACTACCGGAAGTGTCAT
TCTTCCTTCTCACTACAGCGCTCCTCTTCTGGCTTATAATTTTCGTAACC
CTCTTTCAACACTCCCACGTCACACTTGCCAAGGCAAACGAAACGCCTTC
GCCGATCTTCTTTCTGTTTCTGGCTCCGACCGCGCAGGCGACCATCGCAG
CTCTGTTCCTGCTCGCCGCAAGAGAGGTACCGGAGGACTTCCCGTCACGT
ACGCTACTACCTACAGAACCACTACCGTGGTCTATTGGTGCCGAACTGGC
GCACTACGTCAATCTATTCCTGTATCTACTCATGCTCCGTTTGATGCCAT
TGTGGCTCAACCGCCCATTCTCAGTTGTTTGGTGGGCGTACGTCTTCCCC
TTAGGGGGTGCCACTGGAGCTATCTTGCTACGCTACGAGAAGGTGCGCGG
TACGTTTTGGCTTGTAATGACAGTTGCCTCCGGTTCCCTTACTGCAGCAG
CAATGATAATCGTCACCATTCTCACGCTGCGGGGGATATTGAATGGCACG
TTTCCGAACAACGAGAAAAACAGGAAGGCTTACGACATGTTTTGGAAGGG
AAGAAGCACCATGTCACGAATGAAGGTACCCCCTGGTGTTTCTGGAGATA
GCCTCGGGGAAACAACCGGAAGTGCCGAAAATGTTTGA

Coding sequence (CDS) from alignment at NODE_338_length_29361_cov_4.567031:22446..23633+

>Gcaud1783.t1 ID=Gcaud1783.t1|Name=Gcaud1783.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1188bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:22446..23633+ (Gracilaria caudata M_176_S67 male)
ATGCATTCGTCCGCTCTGTCCTCCGACATGGATCCCGTCTCGGCGCAGCC
GTCGCGTTGGCGACAGAAGGTCGTGCAGTTCGACATGTCGCACAACTCTA
TTGCGCTTGCTTTCTATGCGGTCACCGCAACGTTGCGTCTTGCCACTCGA
GTCGATTTGAGTCCGGTTGTACCCGATATTGCATTCGGTATATCCGTGGT
CGTTGTTTTCATATGTGCAACTCTGACGCTGACACGATCCTACATCTTTC
CTGCTGCATTCCGTCAAGACTTCAACAATCCTCGTCTTGTCAACTTCTTC
TATTTGCCACCCATCATCAGTGCGTTGGCACTGACGTCCATGCCGGCTAG
ATTTCGCGTATACATTCCAATGGTCATTGTGTTCTACATAATCACTTTGT
ATCAAACGATTCTTTCGCTCTATCTCTACGGAAATTGGTTGTATAAATCG
TCGCTTTCGGACACTATCTACCCGCTAATCTTCATGCAAACTGTCGGCTT
TTTCCTTCTTTCCATCGTCGCATCTCAACTCGTACTACCGGAAGTGTCAT
TCTTCCTTCTCACTACAGCGCTCCTCTTCTGGCTTATAATTTTCGTAACC
CTCTTTCAACACTCCCACGTCACACTTGCCAAGGCAAACGAAACGCCTTC
GCCGATCTTCTTTCTGTTTCTGGCTCCGACCGCGCAGGCGACCATCGCAG
CTCTGTTCCTGCTCGCCGCAAGAGAGGTACCGGAGGACTTCCCGTCACGT
ACGCTACTACCTACAGAACCACTACCGTGGTCTATTGGTGCCGAACTGGC
GCACTACGTCAATCTATTCCTGTATCTACTCATGCTCCGTTTGATGCCAT
TGTGGCTCAACCGCCCATTCTCAGTTGTTTGGTGGGCGTACGTCTTCCCC
TTAGGGGGTGCCACTGGAGCTATCTTGCTACGCTACGAGAAGGTGCGCGG
TACGTTTTGGCTTGTAATGACAGTTGCCTCCGGTTCCCTTACTGCAGCAG
CAATGATAATCGTCACCATTCTCACGCTGCGGGGGATATTGAATGGCACG
TTTCCGAACAACGAGAAAAACAGGAAGGCTTACGACATGTTTTGGAAGGG
AAGAAGCACCATGTCACGAATGAAGGTACCCCCTGGTGTTTCTGGAGATA
GCCTCGGGGAAACAACCGGAAGTGCCGAAAATGTTTGA