Gcaud1780.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1780.t1
Unique Name	Gcaud1780.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	418

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_338_length_29361_cov_4.567031	contig	NODE_338_length_29361_cov_4.567031:13329..14582 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005848501.1
PFAMs	RRM_1
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K03258
KEGG Pathway	ko03013,ko04150,ko04151,ko05205,map03013,map04150,map04151,map05205
Evalue	3.01e-06
EggNOG OGs	KOG0118@1\|root,KOG0118@2759\|Eukaryota,38124@33090\|Viridiplantae,34MXC@3041\|Chlorophyta
Description	RNA recognition motif
COG category	A
BRITE	ko00000,ko00001,ko03012,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1780	Gcaud1780	Gracilaria caudata M_176_S67 male	gene	NODE_338_length_29361_cov_4.567031 13329..14582 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1780.t1.stop1	Gcaud1780.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_338_length_29361_cov_4.567031 13329..13331 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1780.t1.CDS1	Gcaud1780.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_338_length_29361_cov_4.567031 13329..14582 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1780.t1.exon1	Gcaud1780.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_338_length_29361_cov_4.567031 13329..14582 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1780.t1.start1	Gcaud1780.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_338_length_29361_cov_4.567031 14580..14582 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1780.t1	Gcaud1780.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_338_length_29361_cov_4.567031 13329..14582 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_338_length_29361_cov_4.567031:13329..14582-
coding sequence from alignment at NODE_338_length_29361_cov_4.567031:13329..14582-

mRNA sequence

>Gcaud1780.t1 ID=Gcaud1780.t1|Name=Gcaud1780.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=418bp
MDDDWASDGEEEGLGDLSDIPDIDIPPQQRQNVAPPQKPVPPVVRERPPP
RQNAWTKPIQSQQVRSAAQQPSQPSQPSQARGHHRRQNSFPASFGSKLDR
FDSDPQRQQPRAPNAPTTTLYVANLPYETHEQAIGDFFSVNTIQVFGIRL
MRHSDTGNIKAALVTIAADHVSKALATDGKLFGGRTIHVKVDGTDGKRGG
RERDRGERGHNRTPSFGSFGSRVPANGNQRSGTAWSERGPGHSFDSQLSR
RTSDGSREDRRSRGGSHSKDPTIPTGPPPAGRKKLQLMPRTKPTPALQVD
QGSTDAPKAPQSAMPAPGRQENDSLSHQKGSAAPRRVNSAGGDRFNRNDR
NADKFDRVERRDRGGKVFDDSASKRTNLKETSTTRPSSQPASKKEDDSKR
PVLLNTFAALELNDSDA*

spliced messenger RNA

>Gcaud1780.t1 ID=Gcaud1780.t1|Name=Gcaud1780.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:13329..14582- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGATGACTGGGCGTCAGACGGGGAGGAGGAAGGTCTTGGTGACCT
TTCCGATATCCCTGACATCGATATCCCTCCCCAGCAGCGCCAAAATGTTG
CCCCACCGCAAAAACCTGTGCCTCCTGTTGTTCGTGAACGCCCGCCTCCT
CGCCAAAACGCCTGGACCAAACCCATCCAATCTCAGCAAGTTCGCTCCGC
TGCTCAACAACCGTCCCAACCGTCCCAGCCTTCCCAAGCTCGTGGCCACC
ATCGCAGACAGAACTCCTTCCCCGCCTCTTTCGGTTCCAAGCTCGACAGA
TTTGATTCAGATCCTCAAAGACAACAACCGCGAGCCCCCAATGCGCCCAC
CACCACTCTCTACGTTGCCAATCTTCCGTATGAGACCCATGAGCAAGCAA
TTGGCGACTTTTTCTCTGTCAACACCATCCAAGTCTTTGGCATTCGCCTC
ATGAGACATTCCGATACAGGTAATATTAAGGCTGCACTCGTCACCATTGC
TGCCGATCATGTCTCCAAGGCACTCGCCACCGACGGCAAATTGTTCGGTG
GTAGAACAATACATGTCAAAGTTGATGGCACAGACGGAAAGCGCGGCGGT
CGAGAAAGAGATCGTGGCGAACGCGGCCACAACAGGACCCCTTCATTCGG
TTCTTTCGGATCCAGGGTTCCTGCAAATGGAAACCAACGCTCTGGTACAG
CCTGGAGTGAACGTGGTCCTGGCCACAGCTTTGACAGCCAACTTAGTCGA
CGTACCAGTGACGGCTCTCGCGAAGACCGACGGTCTCGTGGAGGTTCCCA
TTCAAAGGATCCAACTATTCCCACCGGTCCCCCGCCAGCAGGCCGGAAGA
AGCTTCAATTGATGCCTCGTACAAAGCCCACACCTGCTCTGCAGGTTGAT
CAAGGGAGTACTGATGCCCCCAAAGCACCGCAATCCGCAATGCCTGCACC
AGGGAGACAAGAAAACGACAGCCTTTCTCATCAAAAGGGTAGTGCAGCAC
CGCGAAGAGTAAATAGTGCTGGGGGAGACCGATTCAATCGAAACGACCGT
AATGCCGATAAGTTTGACAGGGTTGAAAGACGTGACCGAGGTGGCAAAGT
ATTTGACGATTCAGCGAGCAAGCGGACCAACTTGAAGGAAACCAGCACGA
CCCGACCATCATCCCAGCCTGCTTCAAAGAAAGAGGATGATTCGAAGAGA
CCTGTACTATTGAACACTTTTGCAGCTCTGGAACTCAATGACTCGGACGC
ATGA

protein sequence of Gcaud1780.t1

>Gcaud1780.t1 ID=Gcaud1780.t1|Name=Gcaud1780.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=418bp
MDDDWASDGEEEGLGDLSDIPDIDIPPQQRQNVAPPQKPVPPVVRERPPP
RQNAWTKPIQSQQVRSAAQQPSQPSQPSQARGHHRRQNSFPASFGSKLDR
FDSDPQRQQPRAPNAPTTTLYVANLPYETHEQAIGDFFSVNTIQVFGIRL
MRHSDTGNIKAALVTIAADHVSKALATDGKLFGGRTIHVKVDGTDGKRGG
RERDRGERGHNRTPSFGSFGSRVPANGNQRSGTAWSERGPGHSFDSQLSR
RTSDGSREDRRSRGGSHSKDPTIPTGPPPAGRKKLQLMPRTKPTPALQVD
QGSTDAPKAPQSAMPAPGRQENDSLSHQKGSAAPRRVNSAGGDRFNRNDR
NADKFDRVERRDRGGKVFDDSASKRTNLKETSTTRPSSQPASKKEDDSKR
PVLLNTFAALELNDSDA*

mRNA from alignment at NODE_338_length_29361_cov_4.567031:13329..14582-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1780.t1 ID=Gcaud1780.t1|Name=Gcaud1780.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:13329..14582- (Gracilaria caudata M_176_S67 male)
ATGGATGATGACTGGGCGTCAGACGGGGAGGAGGAAGGTCTTGGTGACCT
TTCCGATATCCCTGACATCGATATCCCTCCCCAGCAGCGCCAAAATGTTG
CCCCACCGCAAAAACCTGTGCCTCCTGTTGTTCGTGAACGCCCGCCTCCT
CGCCAAAACGCCTGGACCAAACCCATCCAATCTCAGCAAGTTCGCTCCGC
TGCTCAACAACCGTCCCAACCGTCCCAGCCTTCCCAAGCTCGTGGCCACC
ATCGCAGACAGAACTCCTTCCCCGCCTCTTTCGGTTCCAAGCTCGACAGA
TTTGATTCAGATCCTCAAAGACAACAACCGCGAGCCCCCAATGCGCCCAC
CACCACTCTCTACGTTGCCAATCTTCCGTATGAGACCCATGAGCAAGCAA
TTGGCGACTTTTTCTCTGTCAACACCATCCAAGTCTTTGGCATTCGCCTC
ATGAGACATTCCGATACAGGTAATATTAAGGCTGCACTCGTCACCATTGC
TGCCGATCATGTCTCCAAGGCACTCGCCACCGACGGCAAATTGTTCGGTG
GTAGAACAATACATGTCAAAGTTGATGGCACAGACGGAAAGCGCGGCGGT
CGAGAAAGAGATCGTGGCGAACGCGGCCACAACAGGACCCCTTCATTCGG
TTCTTTCGGATCCAGGGTTCCTGCAAATGGAAACCAACGCTCTGGTACAG
CCTGGAGTGAACGTGGTCCTGGCCACAGCTTTGACAGCCAACTTAGTCGA
CGTACCAGTGACGGCTCTCGCGAAGACCGACGGTCTCGTGGAGGTTCCCA
TTCAAAGGATCCAACTATTCCCACCGGTCCCCCGCCAGCAGGCCGGAAGA
AGCTTCAATTGATGCCTCGTACAAAGCCCACACCTGCTCTGCAGGTTGAT
CAAGGGAGTACTGATGCCCCCAAAGCACCGCAATCCGCAATGCCTGCACC
AGGGAGACAAGAAAACGACAGCCTTTCTCATCAAAAGGGTAGTGCAGCAC
CGCGAAGAGTAAATAGTGCTGGGGGAGACCGATTCAATCGAAACGACCGT
AATGCCGATAAGTTTGACAGGGTTGAAAGACGTGACCGAGGTGGCAAAGT
ATTTGACGATTCAGCGAGCAAGCGGACCAACTTGAAGGAAACCAGCACGA
CCCGACCATCATCCCAGCCTGCTTCAAAGAAAGAGGATGATTCGAAGAGA
CCTGTACTATTGAACACTTTTGCAGCTCTGGAACTCAATGACTCGGACGC
ATGA

Coding sequence (CDS) from alignment at NODE_338_length_29361_cov_4.567031:13329..14582-

>Gcaud1780.t1 ID=Gcaud1780.t1|Name=Gcaud1780.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1254bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:13329..14582- (Gracilaria caudata M_176_S67 male)
ATGGATGATGACTGGGCGTCAGACGGGGAGGAGGAAGGTCTTGGTGACCT
TTCCGATATCCCTGACATCGATATCCCTCCCCAGCAGCGCCAAAATGTTG
CCCCACCGCAAAAACCTGTGCCTCCTGTTGTTCGTGAACGCCCGCCTCCT
CGCCAAAACGCCTGGACCAAACCCATCCAATCTCAGCAAGTTCGCTCCGC
TGCTCAACAACCGTCCCAACCGTCCCAGCCTTCCCAAGCTCGTGGCCACC
ATCGCAGACAGAACTCCTTCCCCGCCTCTTTCGGTTCCAAGCTCGACAGA
TTTGATTCAGATCCTCAAAGACAACAACCGCGAGCCCCCAATGCGCCCAC
CACCACTCTCTACGTTGCCAATCTTCCGTATGAGACCCATGAGCAAGCAA
TTGGCGACTTTTTCTCTGTCAACACCATCCAAGTCTTTGGCATTCGCCTC
ATGAGACATTCCGATACAGGTAATATTAAGGCTGCACTCGTCACCATTGC
TGCCGATCATGTCTCCAAGGCACTCGCCACCGACGGCAAATTGTTCGGTG
GTAGAACAATACATGTCAAAGTTGATGGCACAGACGGAAAGCGCGGCGGT
CGAGAAAGAGATCGTGGCGAACGCGGCCACAACAGGACCCCTTCATTCGG
TTCTTTCGGATCCAGGGTTCCTGCAAATGGAAACCAACGCTCTGGTACAG
CCTGGAGTGAACGTGGTCCTGGCCACAGCTTTGACAGCCAACTTAGTCGA
CGTACCAGTGACGGCTCTCGCGAAGACCGACGGTCTCGTGGAGGTTCCCA
TTCAAAGGATCCAACTATTCCCACCGGTCCCCCGCCAGCAGGCCGGAAGA
AGCTTCAATTGATGCCTCGTACAAAGCCCACACCTGCTCTGCAGGTTGAT
CAAGGGAGTACTGATGCCCCCAAAGCACCGCAATCCGCAATGCCTGCACC
AGGGAGACAAGAAAACGACAGCCTTTCTCATCAAAAGGGTAGTGCAGCAC
CGCGAAGAGTAAATAGTGCTGGGGGAGACCGATTCAATCGAAACGACCGT
AATGCCGATAAGTTTGACAGGGTTGAAAGACGTGACCGAGGTGGCAAAGT
ATTTGACGATTCAGCGAGCAAGCGGACCAACTTGAAGGAAACCAGCACGA
CCCGACCATCATCCCAGCCTGCTTCAAAGAAAGAGGATGATTCGAAGAGA
CCTGTACTATTGAACACTTTTGCAGCTCTGGAACTCAATGACTCGGACGC
ATGA