Gcaud1776.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1776.t1
Unique Name	Gcaud1776.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	355

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_338_length_29361_cov_4.567031	contig	NODE_338_length_29361_cov_4.567031:467..1660 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709195.1
PFAMs	DnaJ,DnaJ_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09507,ko:K09510
KEGG Pathway	ko04141,ko05164,map04141,map05164
Evalue	8.97e-45
EggNOG OGs	COG0484@1\|root,KOG0714@2759\|Eukaryota
Description	protein folding
COG category	O
BRITE	ko00000,ko00001,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1776	Gcaud1776	Gracilaria caudata M_176_S67 male	gene	NODE_338_length_29361_cov_4.567031 467..1660 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1776.t1	Gcaud1776.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_338_length_29361_cov_4.567031 467..1660 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1776.t1.start1	Gcaud1776.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_338_length_29361_cov_4.567031 467..469 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1776.t1.CDS1	Gcaud1776.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_338_length_29361_cov_4.567031 467..676 +
Gcaud1776.t1.CDS2	Gcaud1776.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_338_length_29361_cov_4.567031 806..1660 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1776.t1.exon1	Gcaud1776.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_338_length_29361_cov_4.567031 467..676 +
Gcaud1776.t1.exon2	Gcaud1776.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_338_length_29361_cov_4.567031 806..1660 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1776.t1.intron1	Gcaud1776.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_338_length_29361_cov_4.567031 677..805 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1776.t1.stop1	Gcaud1776.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_338_length_29361_cov_4.567031 1658..1660 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_338_length_29361_cov_4.567031:467..1660+
coding sequence from alignment at NODE_338_length_29361_cov_4.567031:467..1660+

mRNA sequence

>Gcaud1776.t1 ID=Gcaud1776.t1|Name=Gcaud1776.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=355bp
MAEFKERGNEQYQACNYESAVELYTAGIEQEPTNAALFSNRSAAYLKLQD
YVKARMDADMCIQLDPKWSKGWWRKGTAQLEDQDYIGARQTFNEGLQHCP
GDENLIAGIEKAKKYIAAVESVHGPGEREKDFNPDDPSKRSAETTTEGTT
PKSSENAASDGDVWPGTPEEEIIRIKNAPNHYAVLHVSTEATGAKMKKNY
YTLARMLHPDKCQLPGAEDAMTSVSQAYDTLTNVVKKTLYDQFLSQTGDD
AEHPNQTYQEWESRQQPVELPRWLNFLLSIKGCAWILPIIMLIIMLPFII
ILVVLFLVLQLLCLPFKLIMRFCFPEKYAQMREEHEREIAKMEEEAQDRM
FAHV*

spliced messenger RNA

>Gcaud1776.t1 ID=Gcaud1776.t1|Name=Gcaud1776.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:467..1660+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAGTTTAAGGAGCGGGGCAATGAGCAGTACCAGGCGTGCAATTA
CGAGAGCGCCGTTGAGCTTTACACGGCGGGTATTGAACAAGAACCTACCA
ATGCCGCGCTCTTCTCCAATCGCTCCGCCGCCTACCTTAAGCTGCAGGAC
TATGTCAAGGCCAGGATGGATGCCGACATGTGCATTCAGCTCGACCCAAA
GTGGTCAAAGGGGTGGTGGAGAAAAGGAACAGCTCAACTCGAGGACCAAG
ATTACATCGGCGCGCGCCAGACATTTAACGAGGGTCTCCAGCACTGCCCC
GGGGACGAGAACCTCATCGCCGGAATAGAAAAGGCCAAAAAGTACATTGC
AGCTGTTGAATCCGTGCATGGTCCTGGAGAACGGGAAAAGGATTTCAATC
CCGATGACCCTTCAAAGCGAAGCGCGGAGACAACAACGGAGGGCACGACC
CCAAAAAGCAGCGAGAATGCTGCCAGCGACGGCGATGTATGGCCTGGAAC
ACCAGAGGAAGAAATCATACGTATCAAGAACGCCCCGAATCATTATGCAG
TGTTGCATGTGTCCACAGAAGCCACAGGCGCGAAAATGAAGAAGAACTAT
TACACCCTGGCGCGCATGCTGCATCCAGACAAATGTCAGCTTCCTGGCGC
GGAAGATGCTATGACATCTGTCTCACAGGCCTACGACACGCTTACCAATG
TGGTCAAGAAGACTTTGTATGACCAGTTTTTGTCGCAAACCGGTGATGAC
GCAGAGCATCCAAATCAAACCTATCAGGAATGGGAAAGTCGGCAGCAACC
TGTCGAGTTACCAAGGTGGCTCAACTTCTTGCTGAGCATCAAGGGCTGCG
CCTGGATTCTTCCCATAATAATGCTCATAATCATGTTGCCCTTCATTATC
ATTCTAGTTGTCTTATTCCTTGTACTGCAACTGTTATGCCTCCCATTCAA
ACTGATTATGCGATTCTGCTTCCCGGAAAAGTATGCGCAAATGAGGGAAG
AACATGAGCGTGAAATTGCAAAGATGGAAGAAGAAGCACAGGATAGAATG
TTTGCACATGTGTAG

protein sequence of Gcaud1776.t1

>Gcaud1776.t1 ID=Gcaud1776.t1|Name=Gcaud1776.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=355bp
MAEFKERGNEQYQACNYESAVELYTAGIEQEPTNAALFSNRSAAYLKLQD
YVKARMDADMCIQLDPKWSKGWWRKGTAQLEDQDYIGARQTFNEGLQHCP
GDENLIAGIEKAKKYIAAVESVHGPGEREKDFNPDDPSKRSAETTTEGTT
PKSSENAASDGDVWPGTPEEEIIRIKNAPNHYAVLHVSTEATGAKMKKNY
YTLARMLHPDKCQLPGAEDAMTSVSQAYDTLTNVVKKTLYDQFLSQTGDD
AEHPNQTYQEWESRQQPVELPRWLNFLLSIKGCAWILPIIMLIIMLPFII
ILVVLFLVLQLLCLPFKLIMRFCFPEKYAQMREEHEREIAKMEEEAQDRM
FAHV*

mRNA from alignment at NODE_338_length_29361_cov_4.567031:467..1660+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1776.t1 ID=Gcaud1776.t1|Name=Gcaud1776.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:467..1660+ (Gracilaria caudata M_176_S67 male)
ATGGCAGAGTTTAAGGAGCGGGGCAATGAGCAGTACCAGGCGTGCAATTA
CGAGAGCGCCGTTGAGCTTTACACGGCGGGTATTGAACAAGAACCTACCA
ATGCCGCGCTCTTCTCCAATCGCTCCGCCGCCTACCTTAAGCTGCAGGAC
TATGTCAAGGCCAGGATGGATGCCGACATGTGCATTCAGCTCGACCCAAA
GTGGTCAAAGGTTAGTTTGTTTATCACACCGCGTTACCGTTCACTGCTGG
CGATGAGCGAAGCCGTCCGTCGTCTTCTTCAGCATCCATCGTCAAAAACA
TGCTGACATATCTCCTTCTTTTTGTGTTGCCGAAAACAGGGGTGGTGGAG
AAAAGGAACAGCTCAACTCGAGGACCAAGATTACATCGGCGCGCGCCAGA
CATTTAACGAGGGTCTCCAGCACTGCCCCGGGGACGAGAACCTCATCGCC
GGAATAGAAAAGGCCAAAAAGTACATTGCAGCTGTTGAATCCGTGCATGG
TCCTGGAGAACGGGAAAAGGATTTCAATCCCGATGACCCTTCAAAGCGAA
GCGCGGAGACAACAACGGAGGGCACGACCCCAAAAAGCAGCGAGAATGCT
GCCAGCGACGGCGATGTATGGCCTGGAACACCAGAGGAAGAAATCATACG
TATCAAGAACGCCCCGAATCATTATGCAGTGTTGCATGTGTCCACAGAAG
CCACAGGCGCGAAAATGAAGAAGAACTATTACACCCTGGCGCGCATGCTG
CATCCAGACAAATGTCAGCTTCCTGGCGCGGAAGATGCTATGACATCTGT
CTCACAGGCCTACGACACGCTTACCAATGTGGTCAAGAAGACTTTGTATG
ACCAGTTTTTGTCGCAAACCGGTGATGACGCAGAGCATCCAAATCAAACC
TATCAGGAATGGGAAAGTCGGCAGCAACCTGTCGAGTTACCAAGGTGGCT
CAACTTCTTGCTGAGCATCAAGGGCTGCGCCTGGATTCTTCCCATAATAA
TGCTCATAATCATGTTGCCCTTCATTATCATTCTAGTTGTCTTATTCCTT
GTACTGCAACTGTTATGCCTCCCATTCAAACTGATTATGCGATTCTGCTT
CCCGGAAAAGTATGCGCAAATGAGGGAAGAACATGAGCGTGAAATTGCAA
AGATGGAAGAAGAAGCACAGGATAGAATGTTTGCACATGTGTAG

Coding sequence (CDS) from alignment at NODE_338_length_29361_cov_4.567031:467..1660+

>Gcaud1776.t1 ID=Gcaud1776.t1|Name=Gcaud1776.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1065bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:467..1660+ (Gracilaria caudata M_176_S67 male)
ATGGCAGAGTTTAAGGAGCGGGGCAATGAGCAGTACCAGGCGTGCAATTA
CGAGAGCGCCGTTGAGCTTTACACGGCGGGTATTGAACAAGAACCTACCA
ATGCCGCGCTCTTCTCCAATCGCTCCGCCGCCTACCTTAAGCTGCAGGAC
TATGTCAAGGCCAGGATGGATGCCGACATGTGCATTCAGCTCGACCCAAA
GTGGTCAAAGGGGTGGTGGAGAAAAGGAACAGCTCAACTCGAGGACCAAG
ATTACATCGGCGCGCGCCAGACATTTAACGAGGGTCTCCAGCACTGCCCC
GGGGACGAGAACCTCATCGCCGGAATAGAAAAGGCCAAAAAGTACATTGC
AGCTGTTGAATCCGTGCATGGTCCTGGAGAACGGGAAAAGGATTTCAATC
CCGATGACCCTTCAAAGCGAAGCGCGGAGACAACAACGGAGGGCACGACC
CCAAAAAGCAGCGAGAATGCTGCCAGCGACGGCGATGTATGGCCTGGAAC
ACCAGAGGAAGAAATCATACGTATCAAGAACGCCCCGAATCATTATGCAG
TGTTGCATGTGTCCACAGAAGCCACAGGCGCGAAAATGAAGAAGAACTAT
TACACCCTGGCGCGCATGCTGCATCCAGACAAATGTCAGCTTCCTGGCGC
GGAAGATGCTATGACATCTGTCTCACAGGCCTACGACACGCTTACCAATG
TGGTCAAGAAGACTTTGTATGACCAGTTTTTGTCGCAAACCGGTGATGAC
GCAGAGCATCCAAATCAAACCTATCAGGAATGGGAAAGTCGGCAGCAACC
TGTCGAGTTACCAAGGTGGCTCAACTTCTTGCTGAGCATCAAGGGCTGCG
CCTGGATTCTTCCCATAATAATGCTCATAATCATGTTGCCCTTCATTATC
ATTCTAGTTGTCTTATTCCTTGTACTGCAACTGTTATGCCTCCCATTCAA
ACTGATTATGCGATTCTGCTTCCCGGAAAAGTATGCGCAAATGAGGGAAG
AACATGAGCGTGAAATTGCAAAGATGGAAGAAGAAGCACAGGATAGAATG
TTTGCACATGTGTAG