Gcaud1774.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1774.t1
Unique NameGcaud1774.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_837_length_17206_cov_4.413380contigNODE_837_length_17206_cov_4.413380:14446..15103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1774Gcaud1774Gracilaria caudata M_176_S67 malegeneNODE_837_length_17206_cov_4.413380 14446..15103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1774.t1Gcaud1774.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_837_length_17206_cov_4.413380 14446..15103 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1774.t1.stop1Gcaud1774.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_837_length_17206_cov_4.413380 14446..14448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1774.t1.CDS1Gcaud1774.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_837_length_17206_cov_4.413380 14446..14949 -
Gcaud1774.t1.CDS2Gcaud1774.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_837_length_17206_cov_4.413380 15068..15103 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1774.t1.exon1Gcaud1774.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_837_length_17206_cov_4.413380 14446..14949 -
Gcaud1774.t1.exon2Gcaud1774.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_837_length_17206_cov_4.413380 15068..15103 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1774.t1.intron1Gcaud1774.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_837_length_17206_cov_4.413380 14950..15067 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1774.t1.start1Gcaud1774.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_837_length_17206_cov_4.413380 15101..15103 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1774.t1 ID=Gcaud1774.t1|Name=Gcaud1774.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=180bp
MLVFIVVPSRQFMNAKKVQCVIRKANLSCWRKSLLSAAPIEKGRHKCWLF
TVKVGNISRQVQYNRLRDFPPEHDGCSSASTCGMEVWPCRLTEDNRVKLR
WSYPVNSIVYCSLGIATALLFGGIAVMKYLRFGKGENEDGEDDGECGSSI
PFSFDESDANAFGADSPQRMDTQPLACLV*
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spliced messenger RNA

>Gcaud1774.t1 ID=Gcaud1774.t1|Name=Gcaud1774.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:14446..15103- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGTCTTCATCGTGGTTCCAAGTCGCCAGTTCATGAATGCTAAGAA
AGTGCAGTGTGTAATTAGAAAAGCTAATCTGTCGTGCTGGAGAAAGTCGC
TGCTGAGCGCAGCCCCGATCGAGAAAGGGCGCCATAAGTGCTGGTTGTTC
ACTGTTAAGGTGGGCAACATATCACGTCAGGTTCAGTACAATAGGCTAAG
GGATTTCCCACCGGAGCATGATGGCTGTTCTTCCGCTTCAACCTGCGGAA
TGGAAGTATGGCCATGCCGCTTGACTGAAGATAACCGGGTGAAATTGCGA
TGGTCATATCCTGTTAACAGTATCGTATACTGTTCTCTTGGGATTGCAAC
AGCACTGCTGTTCGGTGGTATTGCCGTGATGAAATACTTGCGTTTTGGAA
AAGGTGAAAATGAGGATGGAGAAGACGATGGCGAATGTGGTTCGTCAATA
CCTTTTTCATTTGATGAGAGCGATGCCAACGCTTTCGGAGCAGACAGTCC
ACAGCGTATGGATACGCAACCGCTTGCTTGCTTAGTGTAG
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protein sequence of Gcaud1774.t1

>Gcaud1774.t1 ID=Gcaud1774.t1|Name=Gcaud1774.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=180bp
MLVFIVVPSRQFMNAKKVQCVIRKANLSCWRKSLLSAAPIEKGRHKCWLF
TVKVGNISRQVQYNRLRDFPPEHDGCSSASTCGMEVWPCRLTEDNRVKLR
WSYPVNSIVYCSLGIATALLFGGIAVMKYLRFGKGENEDGEDDGECGSSI
PFSFDESDANAFGADSPQRMDTQPLACLV*
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mRNA from alignment at NODE_837_length_17206_cov_4.413380:14446..15103-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1774.t1 ID=Gcaud1774.t1|Name=Gcaud1774.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=658bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:14446..15103- (Gracilaria caudata M_176_S67 male)
ATGCTGGTCTTCATCGTGGTTCCAAGTCGCCAGTTCGTACGTTAATCACT
GATTCACAAGATGTTTAAACATTCTTTCGTAGTCAACTGAAACTTTTCAA
TTACTAACTGAAAGCTTCGTTAATGTTACCATATATGTTTTTTGTACTAC
GTAGATGAATGCTAAGAAAGTGCAGTGTGTAATTAGAAAAGCTAATCTGT
CGTGCTGGAGAAAGTCGCTGCTGAGCGCAGCCCCGATCGAGAAAGGGCGC
CATAAGTGCTGGTTGTTCACTGTTAAGGTGGGCAACATATCACGTCAGGT
TCAGTACAATAGGCTAAGGGATTTCCCACCGGAGCATGATGGCTGTTCTT
CCGCTTCAACCTGCGGAATGGAAGTATGGCCATGCCGCTTGACTGAAGAT
AACCGGGTGAAATTGCGATGGTCATATCCTGTTAACAGTATCGTATACTG
TTCTCTTGGGATTGCAACAGCACTGCTGTTCGGTGGTATTGCCGTGATGA
AATACTTGCGTTTTGGAAAAGGTGAAAATGAGGATGGAGAAGACGATGGC
GAATGTGGTTCGTCAATACCTTTTTCATTTGATGAGAGCGATGCCAACGC
TTTCGGAGCAGACAGTCCACAGCGTATGGATACGCAACCGCTTGCTTGCT
TAGTGTAG
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Coding sequence (CDS) from alignment at NODE_837_length_17206_cov_4.413380:14446..15103-

>Gcaud1774.t1 ID=Gcaud1774.t1|Name=Gcaud1774.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=540bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:14446..15103- (Gracilaria caudata M_176_S67 male)
ATGCTGGTCTTCATCGTGGTTCCAAGTCGCCAGTTCATGAATGCTAAGAA
AGTGCAGTGTGTAATTAGAAAAGCTAATCTGTCGTGCTGGAGAAAGTCGC
TGCTGAGCGCAGCCCCGATCGAGAAAGGGCGCCATAAGTGCTGGTTGTTC
ACTGTTAAGGTGGGCAACATATCACGTCAGGTTCAGTACAATAGGCTAAG
GGATTTCCCACCGGAGCATGATGGCTGTTCTTCCGCTTCAACCTGCGGAA
TGGAAGTATGGCCATGCCGCTTGACTGAAGATAACCGGGTGAAATTGCGA
TGGTCATATCCTGTTAACAGTATCGTATACTGTTCTCTTGGGATTGCAAC
AGCACTGCTGTTCGGTGGTATTGCCGTGATGAAATACTTGCGTTTTGGAA
AAGGTGAAAATGAGGATGGAGAAGACGATGGCGAATGTGGTTCGTCAATA
CCTTTTTCATTTGATGAGAGCGATGCCAACGCTTTCGGAGCAGACAGTCC
ACAGCGTATGGATACGCAACCGCTTGCTTGCTTAGTGTAG
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